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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC25A6 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
187.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1275.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
947.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
867.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
849.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
806.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
778.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
736.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
719.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
645.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
600.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
586.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
573.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
560.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
555.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
551.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
549.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
510.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
483.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
476.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
463.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
415.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
411.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
397.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
375.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
365.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
364.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
363.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
358.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
353.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
334.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
332.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
327.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
325.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
316.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
309.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
303.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
302.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
301.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
300.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
299.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
292.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
284.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
284.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
281.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
277.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
273.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
271.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
271.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
271.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
267.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
265.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
264.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
261.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
260.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
258.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
255.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
255.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
255.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
255.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
252.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
251.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
245.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
243.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
242.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
241.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
236.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
234.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
232.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
231.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
229.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
229.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
229.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
228.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
227.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
227.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
227.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
226.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
225.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
225.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
225.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
223.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
223.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
222.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
222.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
215.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
215.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
213.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
211.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
209.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
209.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
208.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
206.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
205.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
202.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
201.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
201.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
201.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
199.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
199.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
198.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
198.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
197.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
195.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
195.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
194.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
194.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
193.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
192.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
192.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
191.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
191.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
191.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
190.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
189.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
188.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
188.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
187.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
187.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
187.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
186.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
186.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
186.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
184.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
182.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
181.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
181.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
181.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
179.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
179.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
177.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
177.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
175.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
175.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
175.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
175.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
173.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
171.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
170.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
170.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
170.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
170.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
169.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
169.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
169.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
168.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
168.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
168.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
167.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
166.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
166.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
166.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
166.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
166.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
166.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
163.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
163.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
162.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
162.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
162.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
162.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
161.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
161.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
160.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
160.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
160.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
158.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
158.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
157.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
157.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
156.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
155.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
154.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
154.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
154.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
154.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
153.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
153.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
152.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
152.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
151.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
150.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
150.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
149.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
148.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
148.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
148.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
147.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
147.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
147.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
146.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
146.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
145.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
145.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
145.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
145.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
143.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
142.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
142.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
142.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
142.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
142.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
141.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
141.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
141.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
140.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
139.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
139.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
139.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
138.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
138.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
137.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
136.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
136.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
134.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
133.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
132.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
131.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
131.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
131.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
131.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
130.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
130.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
129.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
129.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
129.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
129.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
129.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
129.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
128.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
127.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
127.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
126.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
126.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
126.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
126.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
125.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
124.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
124.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
124.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
123.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
123.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
123.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
122.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
122.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
121.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
121.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
121.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
120.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
120.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
120.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
117.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
117.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
117.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
117.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
116.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
116.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
116.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
116.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
116.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
115.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
114.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
114.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
112.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
112.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
112.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
111.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
111.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
110.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
110.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
109.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
108.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
108.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
108.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
108.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
108.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
108.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
107.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
106.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
106.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
106.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
106.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
105.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
104.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
104.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
104.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
104.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
103.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
103.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
102.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
101.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
100.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
100.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
99.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
99.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
98.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
98.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
98.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
97.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
97.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
97.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
96.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
95.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
95.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
95.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
94.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
93.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
93.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
92.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
91.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
91.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
91.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
90.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
90.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
89.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
88.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
88.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
88.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
87.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
86.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
86.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
86.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
85.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
85.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
82.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
82.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
82.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
82.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
81.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
81.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
81.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
79.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
79.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
79.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
79.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
78.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
77.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
74.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
71.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
71.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
70.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
70.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
69.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
69.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
68.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
67.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
66.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
65.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
65.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
64.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
64.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
62.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
59.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
59.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
58.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
56.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
52.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
50.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
47.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
44.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
41.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
39.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.0
Number of samples
231
Samples
Sample
Description
TPM
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
0.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
0.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
0.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.8
411
Tumor
1.0
571
Tumor
1.0
1027
Tumor
1.0
557
Tumor
0.8
785
Tumor
0.8
491
Tumor
0.7
513
Tumor
0.7
1013
Tumor
0.7
465
Tumor
0.7
745
Tumor
0.6
313
Tumor
0.6
873
Tumor
0.6
863
Tumor
0.6
857
Tumor
0.5
925
Tumor
0.5
435
Tumor
0.5
261
Tumor
0.5
125
Tumor
0.5
515
Tumor
0.5
953
Tumor
0.4
713
Tumor
0.4
393
Tumor
0.4
227
Tumor
0.4
423
Tumor
0.4
851
Tumor
0.4
1043
Tumor
0.4
697
Tumor
0.4
267
Tumor
0.4
365
Tumor
0.3
573
Tumor
0.3
685
Tumor
0.3
1045
Tumor
0.3
721
Tumor
0.3
145
Tumor
0.3
923
Tumor
0.3
231
Tumor
0.3
481
Tumor
0.3
436
Normal
0.3
383
Tumor
0.3
742
Normal
0.3
527
Tumor
0.3
433
Tumor
0.3
161
Tumor
0.3
824
Normal
0.2
147
Tumor
0.2
328
Normal
0.2
864
Normal
0.2
636
Normal
0.2
257
Tumor
0.2
912
Normal
0.2
298
Normal
0.2
862
Normal
0.2
428
Normal
0.2
466
Normal
0.2
978
Normal
0.2
357
Tumor
0.2
171
Tumor
0.2
982
Normal
0.2
141
Tumor
0.2
618
Normal
0.2
414
Normal
0.2
314
Normal
0.2
878
Normal
0.2
451
Tumor
0.2
964
Normal
0.2
786
Normal
0.1
114
Normal
0.1
882
Normal
0.1
641
Tumor
0.1
852
Normal
0.1
162
Normal
0.1
937
Tumor
0.1
818
Normal
0.1
487
Tumor
0.1
135
Tumor
0.1
1016
Normal
0.1
342
Normal
0.1
868
Normal
0.1
136
Normal
0.1
142
Normal
0.1
361
Tumor
0.1
424
Normal
0.1
914
Normal
0.1
858
Normal
0.1
137
Tumor
0.1
358
Normal
0.1
472
Normal
0.1
356
Normal
0.1
262
Normal
0.1
746
Normal
0.1
866
Normal
0.1
567
Tumor
0.1
196
Normal
0.1
138
Normal
0.1
128
Normal
0.1
222
Normal
0.1
214
Normal
0.1
913
Tumor
0.1
741
Tumor
0.1
922
Normal
0.1
111
Normal
0.1
615
Tumor
0.1
1032
Normal
0.1
394
Normal
0.1
816
Normal
0.1
464
Normal
0.1
1046
Normal
0.1
461
Tumor
0.1
113
Tumor
0.1
1026
Normal
0.1
427
Tumor
0.1
616
Normal
0.1
462
Normal
0.1
635
Tumor
0.1
392
Normal
0.1
778
Normal
0.1
148
Normal
0.1
865
Tumor
0.1
1014
Normal
0.1
218
Normal
0.1
568
Normal
0.1
534
Normal
0.0
756
Normal
0.0
146
Normal
0.0
363
Tumor
0.0
124
Normal
0.0
695
Tumor
0.0
874
Normal
0.0
416
Normal
0.0
482
Normal
0.0
723
Tumor
0.0
915
Tumor
0.0
432
Normal
0.0
272
Normal
0.0
642
Normal
0.0
564
Normal
0.0
426
Normal
0.0
968
Normal
0.0
268
Normal
0.0
452
Normal
0.0
728
Normal
0.0
258
Normal
0.0
434
Normal
0.0
696
Normal
0.0
448
Normal
0.0
714
Normal
0.0
188
Normal
0.0
664
Normal
0.0
364
Normal
0.0
686
Normal
0.0
1041
Tumor
0.0
332
Normal
0.0
628
Normal
0.0
278
Normal
0.0
966
Normal
0.0
477
Tumor
0.0
497
Tumor
0.0
698
Normal
0.0
446
Normal
0.0
376
Normal
0.0
468
Normal
0.0
526
Normal
0.0
738
Normal
0.0
823
Tumor
0.0
926
Normal
0.0
483
Tumor
0.0
474
Normal
0.0
232
Normal
0.0
938
Normal
0.0
514
Normal
0.0
1015
Tumor
0.0
1042
Normal
0.0
944
Normal
0.0
572
Normal
0.0
286
Normal
0.0
112
Tumor
0.0
722
Normal
0.0
488
Normal
0.0
662
Normal
0.0
916
Normal
0.0
473
Tumor
0.0
918
Normal
0.0
884
Normal
0.0
648
Normal
0.0
777
Tumor
0.0
343
Tumor
0.0
537
Tumor
0.0
385
Tumor
0.0
744
Normal
0.0
911
Tumor
0.0
518
Normal
0.0
412
Normal
0.0
366
Normal
0.0
352
Normal
0.0
467
Tumor
0.0
574
Normal
0.0
422
Normal
0.0
984
Normal
0.0
228
Normal
0.0
284
Normal
0.0
443
Tumor
0.0
861
Tumor
0.0
362
Normal
-0.1
558
Normal
-0.1
445
Tumor
-0.1
525
Tumor
-0.1
867
Tumor
-0.1
952
Normal
-0.1
976
Normal
-0.1
172
Normal
-0.1
528
Normal
-0.1
388
Normal
-0.1
727
Tumor
-0.1
312
Normal
-0.1
716
Normal
-0.1
954
Normal
-0.1
478
Normal
-0.1
1022
Normal
-0.1
924
Normal
-0.1
755
Tumor
-0.1
344
Normal
-0.1
661
Tumor
-0.1
456
Normal
-0.1
386
Normal
-0.1
355
Tumor
-0.1
195
Tumor
-0.1
1028
Normal
-0.1
277
Tumor
-0.1
354
Normal
-0.1
516
Normal
-0.1
212
Normal
-0.1
815
Tumor
-0.1
384
Normal
-0.1
563
Tumor
-0.1
1044
Normal
-0.1
955
Tumor
-0.1
368
Normal
-0.1
191
Tumor
-0.1
981
Tumor
-0.1
387
Tumor
-0.1
963
Tumor
-0.1
546
Normal
-0.1
484
Normal
-0.1
132
Normal
-0.1
224
Normal
-0.1
126
Normal
-0.1
396
Normal
-0.1
186
Normal
-0.1
187
Tumor
-0.1
494
Normal
-0.2
724
Normal
-0.2
455
Tumor
-0.2
881
Tumor
-0.2
665
Tumor
-0.2
666
Normal
-0.2
127
Tumor
-0.2
217
Tumor
-0.2
297
Tumor
-0.2
813
Tumor
-0.2
367
Tumor
-0.2
917
Tumor
-0.2
672
Normal
-0.2
421
Tumor
-0.2
1031
Tumor
-0.2
533
Tumor
-0.2
737
Tumor
-0.2
647
Tumor
-0.2
524
Normal
-0.2
977
Tumor
-0.2
192
Normal
-0.2
671
Tumor
-0.2
883
Tumor
-0.2
958
Normal
-0.2
311
Tumor
-0.2
663
Tumor
-0.2
983
Tumor
-0.2
395
Tumor
-0.2
956
Normal
-0.2
327
Tumor
-0.2
538
Normal
-0.3
444
Normal
-0.3
814
Normal
-0.3
431
Tumor
-0.3
283
Tumor
-0.3
213
Tumor
-0.3
517
Tumor
-0.3
351
Tumor
-0.3
943
Tumor
-0.3
492
Normal
-0.3
221
Tumor
-0.3
967
Tumor
-0.3
536
Normal
-0.3
957
Tumor
-0.3
353
Tumor
-0.3
123
Tumor
-0.3
493
Tumor
-0.3
554
Normal
-0.3
447
Tumor
-0.3
921
Tumor
-0.3
185
Tumor
-0.3
463
Tumor
-0.3
375
Tumor
-0.3
471
Tumor
-0.4
413
Tumor
-0.4
498
Normal
-0.4
617
Tumor
-0.4
1025
Tumor
-0.4
715
Tumor
-0.4
415
Tumor
-0.4
523
Tumor
-0.4
341
Tumor
-0.4
975
Tumor
-0.4
285
Tumor
-0.4
271
Tumor
-0.5
391
Tumor
-0.5
743
Tumor
-0.5
223
Tumor
-0.5
425
Tumor
-0.5
965
Tumor
-0.5
951
Tumor
-0.6
535
Tumor
-0.6
211
Tumor
-0.6
817
Tumor
-0.6
1021
Tumor
-0.6
877
Tumor
-0.7
553
Tumor
-0.7
131
Tumor
-0.8
331
Tumor
-0.9
545
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.