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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UPF3A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
35.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
26.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
24.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
21.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
20.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
19.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
18.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
12.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
12.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
9.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
9.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
6.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
6.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
5.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
4.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
4.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UPF3A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.0
Number of samples
231
Samples
Sample
Description
TPM
DO45263
0 years, male, NA, stage:3, dead, 270 days
247.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
100.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
47.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
46.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
43.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
39.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
38.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
37.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
35.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
34.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
33.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
31.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
30.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
28.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
28.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
28.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
27.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
27.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
27.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
26.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
26.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
26.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
26.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
26.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
25.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
25.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
24.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
24.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
24.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
24.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
24.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
24.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
24.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
24.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
23.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
23.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
23.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
23.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
23.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
23.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
23.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
23.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
22.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
22.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
22.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
22.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
21.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
21.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
21.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
21.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
21.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
21.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
21.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
20.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
20.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
20.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
20.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
19.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
19.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
19.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
19.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
19.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
18.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
18.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
18.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
18.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
17.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
15.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
15.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
13.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
135
Tumor
1.7
815
Tumor
1.6
695
Tumor
1.2
743
Tumor
1.2
535
Tumor
1.0
553
Tumor
0.8
635
Tumor
0.7
232
Normal
0.7
185
Tumor
0.6
331
Tumor
0.6
515
Tumor
0.6
737
Tumor
0.6
545
Tumor
0.6
393
Tumor
0.6
741
Tumor
0.5
877
Tumor
0.5
513
Tumor
0.5
187
Tumor
0.5
951
Tumor
0.5
413
Tumor
0.5
131
Tumor
0.5
1025
Tumor
0.5
277
Tumor
0.5
455
Tumor
0.5
297
Tumor
0.5
188
Normal
0.4
537
Tumor
0.4
1043
Tumor
0.4
563
Tumor
0.4
641
Tumor
0.4
671
Tumor
0.4
258
Normal
0.4
715
Tumor
0.4
195
Tumor
0.4
984
Normal
0.4
981
Tumor
0.4
921
Tumor
0.3
1041
Tumor
0.3
271
Tumor
0.3
865
Tumor
0.3
881
Tumor
0.3
113
Tumor
0.3
445
Tumor
0.3
523
Tumor
0.3
467
Tumor
0.3
357
Tumor
0.3
352
Normal
0.3
663
Tumor
0.3
267
Tumor
0.3
572
Normal
0.3
214
Normal
0.3
516
Normal
0.3
227
Tumor
0.3
514
Normal
0.3
311
Tumor
0.3
124
Normal
0.3
883
Tumor
0.3
661
Tumor
0.3
222
Normal
0.3
558
Normal
0.3
955
Tumor
0.3
128
Normal
0.3
261
Tumor
0.3
471
Tumor
0.2
262
Normal
0.2
716
Normal
0.2
983
Tumor
0.2
351
Tumor
0.2
574
Normal
0.2
196
Normal
0.2
125
Tumor
0.2
385
Tumor
0.2
353
Tumor
0.2
354
Normal
0.2
461
Tumor
0.2
915
Tumor
0.2
538
Normal
0.2
494
Normal
0.2
628
Normal
0.2
564
Normal
0.2
525
Tumor
0.2
268
Normal
0.2
483
Tumor
0.2
642
Normal
0.2
358
Normal
0.2
425
Tumor
0.2
867
Tumor
0.2
546
Normal
0.2
142
Normal
0.2
366
Normal
0.2
953
Tumor
0.2
1032
Normal
0.2
488
Normal
0.2
697
Tumor
0.2
481
Tumor
0.2
785
Tumor
0.2
944
Normal
0.2
493
Tumor
0.2
1014
Normal
0.2
665
Tumor
0.2
817
Tumor
0.2
415
Tumor
0.2
446
Normal
0.2
911
Tumor
0.2
721
Tumor
0.2
528
Normal
0.2
192
Normal
0.2
447
Tumor
0.2
132
Normal
0.2
313
Tumor
0.2
672
Normal
0.2
922
Normal
0.2
411
Tumor
0.2
355
Tumor
0.2
327
Tumor
0.1
666
Normal
0.1
976
Normal
0.1
938
Normal
0.1
958
Normal
0.1
526
Normal
0.1
964
Normal
0.1
146
Normal
0.1
186
Normal
0.1
148
Normal
0.1
478
Normal
0.1
618
Normal
0.1
937
Tumor
0.1
918
Normal
0.1
286
Normal
0.1
517
Tumor
0.1
852
Normal
0.1
111
Normal
0.1
524
Normal
0.1
312
Normal
0.1
363
Tumor
0.1
172
Normal
0.1
498
Normal
0.1
448
Normal
0.1
866
Normal
0.1
344
Normal
0.1
554
Normal
0.1
368
Normal
0.1
816
Normal
0.1
162
Normal
0.1
916
Normal
0.1
376
Normal
0.1
231
Tumor
0.1
616
Normal
0.1
474
Normal
0.1
137
Tumor
0.1
823
Tumor
0.1
332
Normal
0.1
384
Normal
0.1
482
Normal
0.1
851
Tumor
0.1
1022
Normal
0.1
416
Normal
0.1
864
Normal
0.1
365
Tumor
0.1
862
Normal
0.1
456
Normal
0.1
744
Normal
0.1
878
Normal
0.1
386
Normal
0.1
518
Normal
0.1
218
Normal
0.1
924
Normal
0.1
926
Normal
0.1
412
Normal
0.1
394
Normal
0.1
136
Normal
0.1
228
Normal
0.1
956
Normal
0.1
314
Normal
0.0
221
Tumor
0.0
464
Normal
0.0
617
Tumor
0.0
141
Tumor
0.0
571
Tumor
0.0
1013
Tumor
0.0
884
Normal
0.0
686
Normal
0.0
975
Tumor
0.0
967
Tumor
0.0
727
Tumor
0.0
968
Normal
0.0
917
Tumor
0.0
696
Normal
0.0
1031
Tumor
0.0
954
Normal
0.0
145
Tumor
0.0
813
Tumor
0.0
126
Normal
0.0
568
Normal
0.0
472
Normal
0.0
436
Normal
0.0
746
Normal
0.0
138
Normal
0.0
952
Normal
0.0
536
Normal
0.0
356
Normal
0.0
211
Tumor
0.0
375
Tumor
0.0
714
Normal
0.0
868
Normal
0.0
534
Normal
0.0
913
Tumor
0.0
1028
Normal
0.0
742
Normal
0.0
818
Normal
0.0
362
Normal
0.0
982
Normal
0.0
662
Normal
0.0
191
Tumor
0.0
462
Normal
0.0
284
Normal
0.0
285
Tumor
0.0
1016
Normal
0.0
443
Tumor
0.0
465
Tumor
0.0
278
Normal
0.0
923
Tumor
0.0
664
Normal
0.0
786
Normal
0.0
978
Normal
0.0
1046
Normal
0.0
364
Normal
0.0
388
Normal
0.0
114
Normal
0.0
778
Normal
-0.1
431
Tumor
-0.1
161
Tumor
-0.1
433
Tumor
-0.1
636
Normal
-0.1
858
Normal
-0.1
257
Tumor
-0.1
466
Normal
-0.1
824
Normal
-0.1
861
Tumor
-0.1
212
Normal
-0.1
738
Normal
-0.1
963
Tumor
-0.1
342
Normal
-0.1
492
Normal
-0.1
882
Normal
-0.1
127
Tumor
-0.1
468
Normal
-0.1
444
Normal
-0.1
432
Normal
-0.1
723
Tumor
-0.1
328
Normal
-0.1
755
Tumor
-0.1
224
Normal
-0.1
1042
Normal
-0.1
698
Normal
-0.1
756
Normal
-0.1
567
Tumor
-0.1
484
Normal
-0.1
392
Normal
-0.1
557
Tumor
-0.1
434
Normal
-0.1
912
Normal
-0.1
414
Normal
-0.1
426
Normal
-0.1
341
Tumor
-0.1
223
Tumor
-0.1
713
Tumor
-0.1
387
Tumor
-0.1
1021
Tumor
-0.1
477
Tumor
-0.1
1044
Normal
-0.1
428
Normal
-0.1
361
Tumor
-0.1
728
Normal
-0.1
648
Normal
-0.1
615
Tumor
-0.1
424
Normal
-0.2
874
Normal
-0.2
627
Tumor
-0.2
422
Normal
-0.2
396
Normal
-0.2
814
Normal
-0.2
914
Normal
-0.2
1027
Tumor
-0.2
925
Tumor
-0.2
298
Normal
-0.2
777
Tumor
-0.2
213
Tumor
-0.2
497
Tumor
-0.2
367
Tumor
-0.2
452
Normal
-0.2
966
Normal
-0.3
217
Tumor
-0.3
435
Tumor
-0.3
491
Tumor
-0.3
473
Tumor
-0.3
427
Tumor
-0.3
1026
Normal
-0.3
857
Tumor
-0.3
391
Tumor
-0.3
487
Tumor
-0.3
527
Tumor
-0.3
943
Tumor
-0.3
423
Tumor
-0.3
724
Normal
-0.3
873
Tumor
-0.3
1015
Tumor
-0.3
421
Tumor
-0.4
957
Tumor
-0.4
965
Tumor
-0.4
977
Tumor
-0.4
451
Tumor
-0.4
722
Normal
-0.4
283
Tumor
-0.4
343
Tumor
-0.4
123
Tumor
-0.5
383
Tumor
-0.5
573
Tumor
-0.5
685
Tumor
-0.5
1045
Tumor
-0.5
745
Tumor
-0.5
112
Tumor
-0.5
395
Tumor
-0.5
863
Tumor
-0.5
171
Tumor
-0.6
463
Tumor
-0.6
272
Normal
-0.6
147
Tumor
-0.7
533
Tumor
-0.8
647
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
