MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.0 nTPM
HPA Brain:60.2 nTPM
GTEx:12.0 nTPM
FANTOM5:79.5 Scaled Tags Per Million
Pig:69.9 nTPM
Mouse:26.1 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 60.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.4
2586 Male, age 75, left hemisphere 73.2
2666 Male, age 74, left hemisphere 64.0
1827 Male, age 72, unknown 62.3
2828 Female, age 72, unknown 57.4
1833 Male, age 53, unknown 57.0
1830 Male, age 51, unknown 56.5
2219 Male, age 76, both hemispheres 56.0
2411 Female, age 72, unknown 52.8
2019 Male, age 18, unknown 52.6
1870 Female, age 42, unknown 52.5
Dorsal raphe nucleus
nTPM: 52.6
2047 Male, age 72, unknown 55.1
2016 Female, age 72, unknown 54.8
2750 Male, age 76, both hemispheres 53.0
1828 Male, age 53, unknown 52.4
2298 Female, age 72, unknown 47.6
Inferior colliculus
nTPM: 56.9
2849 Male, age 72, unknown 63.3
1848 Female, age 42, unknown 57.4
1890 Male, age 53, unknown 53.6
2097 Female, age 72, unknown 53.2
Median raphe nucleus
nTPM: 60.2
2220 Male, age 76, midline 60.2
Periaquaductal grey, anterior
nTPM: 56.9
1947 Male, age 18, unknown 60.8
2502 Female, age 75, unknown 56.5
1795 Male, age 51, unknown 53.5
Periaquaductal grey, dorsal
nTPM: 57.2
1840 Male, age 53, unknown 60.2
1831 Male, age 72, unknown 58.6
2850 Male, age 76, both hemispheres 58.3
2464 Female, age 72, unknown 51.8
Periaquaductal grey, lateral
nTPM: 54.7
2140 Male, age 76, both hemispheres 59.2
2053 Male, age 18, unknown 55.4
2272 Male, age 74, both hemispheres 49.4
Pretectal area
nTPM: 55.2
2407 Male, age 75, both hemispheres 71.5
2825 Male, age 18, unknown 59.9
2667 Female, age 75, unknown 59.7
1816 Male, age 51, unknown 56.5
1815 Male, age 53, unknown 55.5
1944 Female, age 72, unknown 53.0
2316 Male, age 76, right hemisphere 52.4
2007 Male, age 72, unknown 51.9
2224 Female, age 72, unknown 50.6
1817 Female, age 42, unknown 48.9
2273 Male, age 74, both hemispheres 47.4
Red nucleus
nTPM: 57.1
2588 Male, age 74, left hemisphere 66.5
2584 Male, age 75, left hemisphere 65.4
1904 Male, age 53, unknown 59.1
2823 Male, age 76, right hemisphere 58.0
1865 Male, age 51, unknown 56.9
1821 Female, age 72, unknown 56.2
1954 Female, age 42, unknown 56.0
2227 Male, age 72, unknown 55.2
2725 Female, age 75, unknown 54.9
2769 Male, age 72, unknown 54.8
2503 Female, age 72, unknown 53.4
2785 Male, age 18, unknown 49.2
Substantia nigra
nTPM: 58.4
1916 Female, age 42, unknown 66.6
2583 Male, age 75, right hemisphere 60.6
2241 Male, age 72, unknown 60.4
2699 Male, age 18, unknown 60.0
1941 Male, age 53, unknown 58.4
1851 Male, age 51, unknown 57.0
2665 Male, age 74, both hemispheres 57.0
1889 Female, age 72, unknown 56.0
2409 Female, age 72, unknown 55.2
2590 Female, age 75, unknown 53.0
Superior colliculus
nTPM: 57.1
2664 Male, age 75, both hemispheres 68.2
1895 Male, age 76, right hemisphere 61.7
1839 Male, age 51, unknown 60.1
2668 Female, age 75, unknown 59.9
2261 Male, age 18, unknown 59.4
1796 Male, age 53, unknown 56.9
1913 Female, age 42, unknown 55.6
2087 Female, age 72, unknown 52.5
1995 Male, age 72, unknown 48.2
2587 Male, age 74, left hemisphere 48.0
Ventral tegmental area
nTPM: 54.9
2218 Male, age 76, both hemispheres 57.0
1942 Male, age 51, unknown 56.3
2410 Female, age 72, unknown 54.7
1915 Female, age 42, unknown 54.4
2223 Female, age 72, unknown 53.5
2021 Male, age 53, unknown 53.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 12.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.0
Samples: 139

Max nTPM: 20.9
Min nTPM: 7.0
Std nTPM: 2.3
Median nTPM: 11.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 20.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 20.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 18.4
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 17.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 17.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 16.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 16.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 16.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 16.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 16.4
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 16.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 79.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 79.5
FF:10158-103A5 76 years, female 79.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 69.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 65.7
Samples: 4

Max nTPM: 74.0
Min nTPM: 57.5
Sample A Female 74.0
Sample B Female 60.1
Sample C Male 71.0
Sample D Male 57.5
Midbrain
nTPM: 70.0
Samples: 4

Max nTPM: 78.8
Min nTPM: 55.8
Sample A Female 75.6
Sample B Female 55.8
Sample C Male 69.6
Sample D Male 78.8
Periaqueductal gray
nTPM: 57.8
Samples: 3

Max nTPM: 62.6
Min nTPM: 54.6
Sample B Female 54.6
Sample C Male 62.6
Sample D Male 56.2
Superior colliculi
nTPM: 65.3
Samples: 4

Max nTPM: 74.3
Min nTPM: 52.4
Sample A Female 73.2
Sample B Female 52.4
Sample C Male 61.4
Sample D Male 74.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 26.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.1
Samples: 4

Max nTPM: 28.2
Min nTPM: 22.1
Sample A Male 22.1
Sample B Male 27.0
Sample C Female 28.2
Sample D Female 27.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
79904518 Antisense, RP_071218_03_D12, Mouse strain C57BL/6J (56 days, male) 0.8
79908808 Antisense, RP_071218_03_D12, Mouse strain C57BL/6J (56 days, male) 0.3

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