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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LGALS9 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
233.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
159.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
145.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
145.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
118.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
113.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
101.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
100.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
93.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
82.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
81.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
80.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
72.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
72.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
70.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
69.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
64.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
64.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
60.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
58.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
58.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
57.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
48.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
47.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
45.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
45.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
45.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
43.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
42.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
41.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
38.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
37.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
36.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
34.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
34.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
33.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
33.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
32.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
32.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
32.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
31.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
31.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
29.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
29.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
29.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
29.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
28.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
28.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
28.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
27.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
27.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
27.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
25.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
25.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
25.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
25.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
24.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
24.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
23.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
23.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
22.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
22.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
21.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
20.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
20.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
20.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
20.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
19.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
19.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
19.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
19.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
18.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
18.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
18.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
18.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
17.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
17.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
16.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
16.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
15.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
15.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
13.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
12.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LGALS9 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.9
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
350.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
213.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
203.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
201.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
171.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
170.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
115.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
109.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
103.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
100.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
94.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
90.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
89.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
86.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
84.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
84.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
82.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
81.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
71.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
70.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
65.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
64.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
62.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
61.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
58.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
55.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
54.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
54.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
53.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
52.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
50.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
50.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
50.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
48.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
48.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
47.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
47.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
46.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
45.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
45.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
43.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
42.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
42.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
42.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
37.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
37.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
35.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
34.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
34.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
32.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
32.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
32.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
31.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
31.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
31.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
30.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
30.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
30.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
29.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
29.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
29.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
29.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
29.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
28.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
27.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
27.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
27.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
27.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
26.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
25.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
24.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
24.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
23.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
23.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
23.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
23.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
23.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
23.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
22.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
21.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
21.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
21.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
20.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
20.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
20.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
20.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
19.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
18.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
18.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
18.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
17.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
17.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
16.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
3.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
311
Tumor
1.9
211
Tumor
1.5
661
Tumor
1.4
375
Tumor
1.4
953
Tumor
1.3
917
Tumor
1.1
455
Tumor
1.0
262
Normal
0.9
491
Tumor
0.9
724
Normal
0.8
434
Normal
0.8
213
Tumor
0.7
395
Tumor
0.7
966
Normal
0.7
492
Normal
0.7
823
Tumor
0.7
217
Tumor
0.7
524
Normal
0.7
857
Tumor
0.6
268
Normal
0.6
814
Normal
0.6
447
Tumor
0.6
538
Normal
0.6
978
Normal
0.5
851
Tumor
0.5
385
Tumor
0.5
283
Tumor
0.5
1015
Tumor
0.5
461
Tumor
0.5
352
Normal
0.5
713
Tumor
0.5
444
Normal
0.5
545
Tumor
0.5
498
Normal
0.5
124
Normal
0.5
261
Tumor
0.5
861
Tumor
0.5
467
Tumor
0.4
525
Tumor
0.4
925
Tumor
0.4
817
Tumor
0.4
943
Tumor
0.4
141
Tumor
0.4
527
Tumor
0.4
883
Tumor
0.4
914
Normal
0.4
195
Tumor
0.4
865
Tumor
0.4
343
Tumor
0.4
218
Normal
0.4
421
Tumor
0.4
536
Normal
0.4
272
Normal
0.4
672
Normal
0.4
142
Normal
0.3
185
Tumor
0.3
478
Normal
0.3
224
Normal
0.3
1028
Normal
0.3
628
Normal
0.3
975
Tumor
0.3
416
Normal
0.3
666
Normal
0.3
383
Tumor
0.3
664
Normal
0.3
415
Tumor
0.3
881
Tumor
0.3
191
Tumor
0.3
344
Normal
0.3
368
Normal
0.3
138
Normal
0.3
813
Tumor
0.3
258
Normal
0.3
391
Tumor
0.3
778
Normal
0.3
573
Tumor
0.3
145
Tumor
0.3
366
Normal
0.2
662
Normal
0.2
963
Tumor
0.2
535
Tumor
0.2
188
Normal
0.2
363
Tumor
0.2
427
Tumor
0.2
916
Normal
0.2
365
Tumor
0.2
146
Normal
0.2
332
Normal
0.2
137
Tumor
0.2
563
Tumor
0.2
574
Normal
0.2
126
Normal
0.2
354
Normal
0.2
284
Normal
0.2
358
Normal
0.2
192
Normal
0.2
413
Tumor
0.2
558
Normal
0.2
384
Normal
0.1
297
Tumor
0.1
468
Normal
0.1
113
Tumor
0.1
456
Normal
0.1
564
Normal
0.1
493
Tumor
0.1
355
Tumor
0.1
815
Tumor
0.1
1026
Normal
0.1
362
Normal
0.1
721
Tumor
0.1
954
Normal
0.1
533
Tumor
0.1
187
Tumor
0.1
852
Normal
0.1
913
Tumor
0.1
976
Normal
0.1
278
Normal
0.1
286
Normal
0.1
1043
Tumor
0.1
642
Normal
0.1
636
Normal
0.1
424
Normal
0.1
627
Tumor
0.1
313
Tumor
0.1
214
Normal
0.1
312
Normal
0.1
386
Normal
0.1
114
Normal
0.1
874
Normal
0.1
878
Normal
0.1
816
Normal
0.1
298
Normal
0.0
518
Normal
0.0
526
Normal
0.0
394
Normal
0.0
111
Normal
0.0
228
Normal
0.0
617
Tumor
0.0
232
Normal
0.0
515
Tumor
0.0
728
Normal
0.0
568
Normal
0.0
618
Normal
0.0
983
Tumor
0.0
951
Tumor
0.0
1045
Tumor
0.0
1031
Tumor
0.0
367
Tumor
0.0
516
Normal
0.0
858
Normal
0.0
926
Normal
0.0
722
Normal
0.0
1042
Normal
0.0
462
Normal
0.0
471
Tumor
0.0
432
Normal
0.0
686
Normal
0.0
696
Normal
0.0
392
Normal
0.0
396
Normal
0.0
1046
Normal
-0.1
572
Normal
-0.1
376
Normal
-0.1
952
Normal
-0.1
271
Tumor
-0.1
1016
Normal
-0.1
428
Normal
-0.1
356
Normal
-0.1
755
Tumor
-0.1
423
Tumor
-0.1
451
Tumor
-0.1
554
Normal
-0.1
414
Normal
-0.1
353
Tumor
-0.1
364
Normal
-0.1
314
Normal
-0.1
528
Normal
-0.1
327
Tumor
-0.1
716
Normal
-0.1
162
Normal
-0.1
862
Normal
-0.1
567
Tumor
-0.1
514
Normal
-0.1
494
Normal
-0.1
641
Tumor
-0.1
267
Tumor
-0.1
884
Normal
-0.1
132
Normal
-0.1
464
Normal
-0.1
342
Normal
-0.1
616
Normal
-0.1
466
Normal
-0.1
223
Tumor
-0.1
387
Tumor
-0.1
968
Normal
-0.1
125
Tumor
-0.1
1022
Normal
-0.1
186
Normal
-0.1
472
Normal
-0.1
665
Tumor
-0.1
786
Normal
-0.1
1044
Normal
-0.2
557
Tumor
-0.2
212
Normal
-0.2
824
Normal
-0.2
222
Normal
-0.2
553
Tumor
-0.2
422
Normal
-0.2
452
Normal
-0.2
1032
Normal
-0.2
918
Normal
-0.2
818
Normal
-0.2
474
Normal
-0.2
448
Normal
-0.2
497
Tumor
-0.2
924
Normal
-0.2
161
Tumor
-0.2
912
Normal
-0.2
984
Normal
-0.2
546
Normal
-0.2
277
Tumor
-0.2
227
Tumor
-0.2
172
Normal
-0.2
714
Normal
-0.2
196
Normal
-0.2
923
Tumor
-0.2
412
Normal
-0.2
866
Normal
-0.2
433
Tumor
-0.2
388
Normal
-0.2
483
Tumor
-0.2
136
Normal
-0.2
868
Normal
-0.2
956
Normal
-0.2
463
Tumor
-0.2
922
Normal
-0.2
488
Normal
-0.2
331
Tumor
-0.2
957
Tumor
-0.2
148
Normal
-0.2
357
Tumor
-0.3
361
Tumor
-0.3
1014
Normal
-0.3
744
Normal
-0.3
426
Normal
-0.3
738
Normal
-0.3
135
Tumor
-0.3
328
Normal
-0.3
867
Tumor
-0.3
785
Tumor
-0.3
715
Tumor
-0.3
537
Tumor
-0.3
756
Normal
-0.3
443
Tumor
-0.3
481
Tumor
-0.3
615
Tumor
-0.3
1025
Tumor
-0.3
877
Tumor
-0.3
938
Normal
-0.3
958
Normal
-0.3
955
Tumor
-0.3
882
Normal
-0.3
921
Tumor
-0.3
1021
Tumor
-0.3
944
Normal
-0.3
482
Normal
-0.4
864
Normal
-0.4
571
Tumor
-0.4
257
Tumor
-0.4
128
Normal
-0.4
648
Normal
-0.4
671
Tumor
-0.4
534
Normal
-0.4
964
Normal
-0.4
1027
Tumor
-0.4
746
Normal
-0.4
231
Tumor
-0.4
698
Normal
-0.4
873
Tumor
-0.4
697
Tumor
-0.4
965
Tumor
-0.4
663
Tumor
-0.4
446
Normal
-0.4
982
Normal
-0.4
341
Tumor
-0.4
937
Tumor
-0.4
727
Tumor
-0.4
863
Tumor
-0.4
484
Normal
-0.5
977
Tumor
-0.5
742
Normal
-0.5
915
Tumor
-0.5
517
Tumor
-0.5
477
Tumor
-0.5
127
Tumor
-0.5
777
Tumor
-0.5
967
Tumor
-0.5
147
Tumor
-0.5
436
Normal
-0.5
285
Tumor
-0.5
723
Tumor
-0.6
745
Tumor
-0.6
685
Tumor
-0.6
523
Tumor
-0.6
393
Tumor
-0.6
1041
Tumor
-0.6
411
Tumor
-0.6
513
Tumor
-0.6
737
Tumor
-0.6
473
Tumor
-0.6
487
Tumor
-0.6
221
Tumor
-0.7
112
Tumor
-0.7
351
Tumor
-0.7
431
Tumor
-0.7
1013
Tumor
-0.8
695
Tumor
-0.8
171
Tumor
-0.8
911
Tumor
-0.8
981
Tumor
-0.9
425
Tumor
-0.9
465
Tumor
-0.9
131
Tumor
-1.0
647
Tumor
-1.0
635
Tumor
-1.0
445
Tumor
-1.1
743
Tumor
-1.1
741
Tumor
-1.1
123
Tumor
-1.2
435
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
