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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MAT2A is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
40.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
146.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
128.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
126.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
122.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
121.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
118.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
107.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
106.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
106.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
106.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
101.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
101.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
99.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
96.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
90.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
90.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
89.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
87.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
85.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
85.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
85.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
85.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
83.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
82.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
82.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
82.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
81.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
81.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
81.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
80.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
79.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
78.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
78.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
75.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
75.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
75.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
74.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
73.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
72.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
72.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
72.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
71.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
71.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
71.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
71.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
71.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
70.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
70.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
70.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
70.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
69.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
68.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
68.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
68.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
68.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
66.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
66.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
65.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
65.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
65.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
64.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
64.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
64.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
64.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
63.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
63.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
63.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
63.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
63.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
63.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
62.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
62.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
62.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
62.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
62.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
61.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
61.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
60.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
60.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
60.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
60.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
60.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
60.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
59.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
59.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
59.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
59.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
59.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
58.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
57.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
57.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
57.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
57.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
57.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
56.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
56.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
56.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
56.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
56.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
56.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
56.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
56.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
54.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
53.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
52.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
52.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
52.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
52.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
52.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
51.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
51.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
51.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
51.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
50.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
50.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
50.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
49.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
48.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
48.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
48.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
47.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
47.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
47.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
47.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
46.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
46.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
46.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
46.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
46.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
46.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
45.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
45.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
45.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
45.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
45.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
44.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
44.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
43.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
43.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
43.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
42.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
42.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
42.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
41.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
41.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
41.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
41.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
41.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
41.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
40.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
40.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
40.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
40.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
40.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
40.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
39.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
39.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
39.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
39.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
39.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
39.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
38.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
38.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
37.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
37.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
37.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
37.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
37.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
37.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
36.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
36.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
35.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
35.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
35.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
35.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
35.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
35.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
35.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
35.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
35.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
35.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
34.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
34.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
34.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
33.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
33.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
33.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
33.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
33.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
33.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
32.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
32.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
32.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
32.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
32.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
32.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
32.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
32.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
31.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
31.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
31.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
31.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
30.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
30.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
30.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
30.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
30.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
30.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
30.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
29.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
29.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
29.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
29.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
29.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
28.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
28.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
28.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
28.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
28.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
28.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
28.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
28.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
27.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
27.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
27.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
27.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
27.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
27.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
26.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
26.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
26.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
26.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
26.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
26.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
26.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
26.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
26.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
25.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
25.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
25.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
24.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
24.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
24.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
24.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
24.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
24.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
23.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
23.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
23.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
23.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
23.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
23.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
22.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
22.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
22.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
22.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
22.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
22.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
22.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
21.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
21.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
21.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
21.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
21.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
21.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
21.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
20.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
20.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
20.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
20.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
20.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
20.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
20.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
20.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
20.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
20.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
19.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
19.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
19.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
19.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
19.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
19.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
19.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
19.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
19.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
19.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
19.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
18.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
18.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
18.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
17.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
17.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
17.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
16.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
16.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
16.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
16.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
16.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
16.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
15.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
15.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
14.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
14.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
13.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MAT2A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
81.7
Number of samples
231
Samples
Sample
Description
TPM
DO23530
0 years, male, NA, stage:4, dead, 180 days
454.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
256.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
250.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
220.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
215.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
187.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
182.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
174.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
159.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
158.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
150.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
150.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
149.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
148.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
147.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
145.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
144.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
144.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
143.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
137.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
137.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
133.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
131.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
129.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
128.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
126.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
123.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
122.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
121.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
121.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
120.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
120.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
117.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
117.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
115.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
114.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
113.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
113.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
113.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
112.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
112.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
111.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
110.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
109.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
109.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
108.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
108.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
108.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
107.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
106.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
106.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
105.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
105.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
105.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
102.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
101.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
101.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
100.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
100.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
100.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
99.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
99.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
98.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
98.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
98.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
96.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
95.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
95.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
92.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
92.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
92.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
91.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
90.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
89.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
89.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
88.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
88.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
87.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
87.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
87.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
85.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
85.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
85.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
85.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
84.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
84.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
83.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
83.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
82.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
81.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
81.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
81.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
81.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
80.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
80.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
80.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
80.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
80.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
80.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
79.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
79.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
79.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
79.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
78.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
76.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
75.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
75.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
74.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
74.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
74.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
74.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
73.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
73.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
73.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
72.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
71.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
71.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
71.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
71.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
71.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
71.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
70.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
70.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
70.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
70.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
70.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
70.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
69.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
69.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
69.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
68.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
68.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
68.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
68.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
68.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
67.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
66.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
66.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
65.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
65.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
64.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
64.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
63.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
63.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
63.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
63.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
62.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
62.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
62.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
60.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
60.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
60.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
59.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
59.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
59.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
58.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
58.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
58.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
58.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
57.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
57.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
57.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
57.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
57.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
55.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
54.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
54.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
54.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
54.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
53.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
53.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
53.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
52.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
52.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
51.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
51.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
51.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
50.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
49.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
49.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
49.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
49.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
49.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
48.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
47.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
47.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
46.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
46.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
46.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
45.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
45.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
44.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
44.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
44.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
43.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
43.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
42.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
42.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
42.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
41.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
40.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
40.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
40.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
39.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
39.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
39.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
38.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
37.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
37.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
37.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
36.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
36.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
36.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
35.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
35.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
34.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
33.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
33.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
33.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
32.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
30.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
30.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
29.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
29.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
28.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
25.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
23.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
20.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
19.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
19.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
744
Normal
0.6
636
Normal
0.6
862
Normal
0.5
342
Normal
0.5
568
Normal
0.5
332
Normal
0.5
142
Normal
0.5
298
Normal
0.5
376
Normal
0.5
392
Normal
0.5
186
Normal
0.5
572
Normal
0.4
128
Normal
0.4
436
Normal
0.4
488
Normal
0.4
878
Normal
0.4
616
Normal
0.4
558
Normal
0.4
1026
Normal
0.4
358
Normal
0.4
232
Normal
0.4
314
Normal
0.4
912
Normal
0.4
435
Tumor
0.4
124
Normal
0.4
148
Normal
0.4
196
Normal
0.4
452
Normal
0.4
824
Normal
0.4
864
Normal
0.4
394
Normal
0.4
132
Normal
0.4
648
Normal
0.4
218
Normal
0.4
162
Normal
0.4
618
Normal
0.4
685
Tumor
0.4
466
Normal
0.4
866
Normal
0.4
278
Normal
0.3
222
Normal
0.3
698
Normal
0.3
422
Normal
0.3
426
Normal
0.3
738
Normal
0.3
642
Normal
0.3
286
Normal
0.3
742
Normal
0.3
432
Normal
0.3
882
Normal
0.3
388
Normal
0.3
554
Normal
0.3
513
Tumor
0.3
666
Normal
0.3
431
Tumor
0.3
484
Normal
0.3
368
Normal
0.3
344
Normal
0.3
357
Tumor
0.3
746
Normal
0.3
352
Normal
0.3
456
Normal
0.3
353
Tumor
0.3
138
Normal
0.3
482
Normal
0.3
267
Tumor
0.3
446
Normal
0.3
696
Normal
0.3
448
Normal
0.3
786
Normal
0.3
858
Normal
0.3
714
Normal
0.3
557
Tumor
0.3
922
Normal
0.3
414
Normal
0.2
672
Normal
0.2
938
Normal
0.2
952
Normal
0.2
778
Normal
0.2
214
Normal
0.2
127
Tumor
0.2
818
Normal
0.2
464
Normal
0.2
664
Normal
0.2
816
Normal
0.2
465
Tumor
0.2
111
Normal
0.2
756
Normal
0.2
1046
Normal
0.2
755
Tumor
0.2
462
Normal
0.2
172
Normal
0.2
984
Normal
0.2
723
Tumor
0.2
468
Normal
0.2
574
Normal
0.2
982
Normal
0.2
412
Normal
0.2
366
Normal
0.2
1022
Normal
0.2
481
Tumor
0.2
112
Tumor
0.2
628
Normal
0.2
662
Normal
0.2
396
Normal
0.2
1016
Normal
0.2
727
Tumor
0.2
954
Normal
0.2
1028
Normal
0.2
868
Normal
0.2
312
Normal
0.2
384
Normal
0.2
231
Tumor
0.2
258
Normal
0.2
564
Normal
0.2
411
Tumor
0.2
261
Tumor
0.2
114
Normal
0.1
136
Normal
0.1
852
Normal
0.1
227
Tumor
0.1
228
Normal
0.1
617
Tumor
0.1
423
Tumor
0.1
416
Normal
0.1
884
Normal
0.1
354
Normal
0.1
472
Normal
0.1
944
Normal
0.1
663
Tumor
0.1
867
Tumor
0.1
424
Normal
0.1
686
Normal
0.1
1044
Normal
0.1
1014
Normal
0.1
728
Normal
0.1
546
Normal
0.1
413
Tumor
0.1
146
Normal
0.1
284
Normal
0.1
356
Normal
0.1
924
Normal
0.1
526
Normal
0.1
518
Normal
0.1
147
Tumor
0.1
722
Normal
0.1
331
Tumor
0.1
272
Normal
0.1
534
Normal
0.1
528
Normal
0.1
161
Tumor
0.1
195
Tumor
0.1
224
Normal
0.1
716
Normal
0.1
926
Normal
0.1
976
Normal
0.1
914
Normal
0.0
968
Normal
0.0
428
Normal
0.0
341
Tumor
0.0
615
Tumor
0.0
1045
Tumor
0.0
262
Normal
0.0
477
Tumor
0.0
478
Normal
0.0
874
Normal
0.0
517
Tumor
0.0
695
Tumor
0.0
851
Tumor
0.0
217
Tumor
0.0
123
Tumor
0.0
514
Normal
0.0
1032
Normal
0.0
277
Tumor
0.0
964
Normal
0.0
362
Normal
0.0
386
Normal
0.0
474
Normal
0.0
494
Normal
0.0
313
Tumor
0.0
212
Normal
0.0
185
Tumor
0.0
861
Tumor
0.0
915
Tumor
0.0
737
Tumor
0.0
137
Tumor
0.0
387
Tumor
0.0
966
Normal
0.0
1027
Tumor
0.0
873
Tumor
0.0
223
Tumor
0.0
745
Tumor
0.0
978
Normal
0.0
883
Tumor
0.0
126
Normal
0.0
815
Tumor
0.0
415
Tumor
0.0
647
Tumor
0.0
955
Tumor
-0.1
434
Normal
-0.1
444
Normal
-0.1
393
Tumor
-0.1
421
Tumor
-0.1
268
Normal
-0.1
363
Tumor
-0.1
918
Normal
-0.1
1013
Tumor
-0.1
463
Tumor
-0.1
857
Tumor
-0.1
956
Normal
-0.1
364
Normal
-0.1
433
Tumor
-0.1
571
Tumor
-0.1
627
Tumor
-0.1
492
Normal
-0.1
171
Tumor
-0.1
937
Tumor
-0.1
1043
Tumor
-0.1
635
Tumor
-0.1
145
Tumor
-0.1
567
Tumor
-0.1
516
Normal
-0.1
213
Tumor
-0.1
777
Tumor
-0.1
715
Tumor
-0.1
327
Tumor
-0.1
523
Tumor
-0.1
741
Tumor
-0.2
527
Tumor
-0.2
785
Tumor
-0.2
395
Tumor
-0.2
188
Normal
-0.2
916
Normal
-0.2
953
Tumor
-0.2
958
Normal
-0.2
141
Tumor
-0.2
524
Normal
-0.2
563
Tumor
-0.2
467
Tumor
-0.2
328
Normal
-0.2
538
Normal
-0.2
473
Tumor
-0.2
1021
Tumor
-0.2
515
Tumor
-0.2
192
Normal
-0.2
641
Tumor
-0.2
537
Tumor
-0.2
131
Tumor
-0.2
536
Normal
-0.2
498
Normal
-0.2
965
Tumor
-0.2
391
Tumor
-0.2
983
Tumor
-0.2
443
Tumor
-0.2
1025
Tumor
-0.2
285
Tumor
-0.2
1042
Normal
-0.2
191
Tumor
-0.2
665
Tumor
-0.2
351
Tumor
-0.2
813
Tumor
-0.2
977
Tumor
-0.3
361
Tumor
-0.3
865
Tumor
-0.3
963
Tumor
-0.3
814
Normal
-0.3
493
Tumor
-0.3
385
Tumor
-0.3
365
Tumor
-0.3
297
Tumor
-0.3
257
Tumor
-0.3
1041
Tumor
-0.3
863
Tumor
-0.3
877
Tumor
-0.3
445
Tumor
-0.3
743
Tumor
-0.3
721
Tumor
-0.3
981
Tumor
-0.3
967
Tumor
-0.3
951
Tumor
-0.3
113
Tumor
-0.3
1031
Tumor
-0.3
271
Tumor
-0.3
533
Tumor
-0.4
487
Tumor
-0.4
553
Tumor
-0.4
535
Tumor
-0.4
355
Tumor
-0.4
447
Tumor
-0.4
135
Tumor
-0.4
823
Tumor
-0.4
451
Tumor
-0.4
943
Tumor
-0.4
957
Tumor
-0.4
461
Tumor
-0.4
881
Tumor
-0.4
375
Tumor
-0.4
921
Tumor
-0.4
187
Tumor
-0.4
525
Tumor
-0.4
913
Tumor
-0.4
483
Tumor
-0.4
925
Tumor
-0.5
221
Tumor
-0.5
975
Tumor
-0.5
1015
Tumor
-0.5
455
Tumor
-0.5
427
Tumor
-0.5
491
Tumor
-0.5
911
Tumor
-0.5
367
Tumor
-0.5
383
Tumor
-0.5
923
Tumor
-0.5
471
Tumor
-0.5
311
Tumor
-0.6
917
Tumor
-0.6
545
Tumor
-0.6
497
Tumor
-0.6
817
Tumor
-0.6
425
Tumor
-0.6
211
Tumor
-0.6
713
Tumor
-0.6
671
Tumor
-0.7
343
Tumor
-0.7
697
Tumor
-0.7
573
Tumor
-0.7
125
Tumor
-0.7
661
Tumor
-0.7
283
Tumor
-0.8
724
Normal
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
