MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:83.4 nTPM
HPA Brain:30.2 nTPM
GTEx:83.4 nTPM
FANTOM5:14.5 Scaled Tags Per Million
Pig:19.7 nTPM
Mouse:9.7 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 30.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.7
2586 Male, age 75, left hemisphere 34.2
2828 Female, age 72, unknown 33.4
1870 Female, age 42, unknown 30.2
2666 Male, age 74, left hemisphere 29.0
1833 Male, age 53, unknown 24.0
2019 Male, age 18, unknown 23.5
1830 Male, age 51, unknown 23.2
1827 Male, age 72, unknown 21.9
2411 Female, age 72, unknown 20.8
2219 Male, age 76, both hemispheres 16.8
Dorsal raphe nucleus
nTPM: 28.4
2016 Female, age 72, unknown 33.6
1828 Male, age 53, unknown 29.5
2298 Female, age 72, unknown 28.0
2047 Male, age 72, unknown 27.5
2750 Male, age 76, both hemispheres 23.6
Inferior colliculus
nTPM: 26.8
1890 Male, age 53, unknown 29.3
1848 Female, age 42, unknown 28.4
2849 Male, age 72, unknown 26.1
2097 Female, age 72, unknown 23.3
Median raphe nucleus
nTPM: 24.5
2220 Male, age 76, midline 24.5
Periaquaductal grey, anterior
nTPM: 27.7
2502 Female, age 75, unknown 31.0
1795 Male, age 51, unknown 27.6
1947 Male, age 18, unknown 24.5
Periaquaductal grey, dorsal
nTPM: 29.3
2850 Male, age 76, both hemispheres 35.4
1831 Male, age 72, unknown 30.6
1840 Male, age 53, unknown 27.8
2464 Female, age 72, unknown 23.5
Periaquaductal grey, lateral
nTPM: 30.1
2053 Male, age 18, unknown 34.6
2140 Male, age 76, both hemispheres 32.8
2272 Male, age 74, both hemispheres 22.8
Pretectal area
nTPM: 23.5
2316 Male, age 76, right hemisphere 31.5
1817 Female, age 42, unknown 26.4
2667 Female, age 75, unknown 25.6
2224 Female, age 72, unknown 24.3
2825 Male, age 18, unknown 23.8
1815 Male, age 53, unknown 22.5
1816 Male, age 51, unknown 22.4
1944 Female, age 72, unknown 21.8
2007 Male, age 72, unknown 21.2
2273 Male, age 74, both hemispheres 21.2
2407 Male, age 75, both hemispheres 17.5
Red nucleus
nTPM: 30.2
1821 Female, age 72, unknown 36.5
2227 Male, age 72, unknown 35.3
1954 Female, age 42, unknown 33.9
2503 Female, age 72, unknown 33.9
1904 Male, age 53, unknown 33.6
2769 Male, age 72, unknown 33.5
1865 Male, age 51, unknown 28.4
2588 Male, age 74, left hemisphere 28.3
2823 Male, age 76, right hemisphere 27.3
2785 Male, age 18, unknown 27.1
2725 Female, age 75, unknown 24.8
2584 Male, age 75, left hemisphere 19.0
Substantia nigra
nTPM: 29.6
2699 Male, age 18, unknown 40.3
1851 Male, age 51, unknown 35.5
2665 Male, age 74, both hemispheres 35.3
1916 Female, age 42, unknown 34.6
1889 Female, age 72, unknown 28.5
2409 Female, age 72, unknown 26.9
2590 Female, age 75, unknown 26.3
2583 Male, age 75, right hemisphere 24.6
2241 Male, age 72, unknown 22.1
1941 Male, age 53, unknown 21.9
Superior colliculus
nTPM: 25.6
1995 Male, age 72, unknown 30.9
2587 Male, age 74, left hemisphere 27.3
2668 Female, age 75, unknown 27.1
1796 Male, age 53, unknown 26.9
1913 Female, age 42, unknown 26.9
1839 Male, age 51, unknown 24.5
2087 Female, age 72, unknown 24.5
2664 Male, age 75, both hemispheres 23.8
1895 Male, age 76, right hemisphere 23.5
2261 Male, age 18, unknown 20.1
Ventral tegmental area
nTPM: 30.2
1915 Female, age 42, unknown 37.8
2021 Male, age 53, unknown 32.4
1942 Male, age 51, unknown 29.7
2218 Male, age 76, both hemispheres 29.6
2410 Female, age 72, unknown 26.5
2223 Female, age 72, unknown 25.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 83.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 83.4
Samples: 139

Max nTPM: 223.3
Min nTPM: 15.1
Std nTPM: 36.7
Median nTPM: 76.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 223.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 189.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 173.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 167.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 166.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 157.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 156.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 151.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 144.6
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 141.6
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 137.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 14.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.5
FF:10158-103A5 76 years, female 14.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 19.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.9
Samples: 4

Max nTPM: 25.0
Min nTPM: 11.4
Sample A Female 11.4
Sample B Female 22.0
Sample C Male 17.3
Sample D Male 25.0
Midbrain
nTPM: 16.6
Samples: 4

Max nTPM: 19.3
Min nTPM: 12.8
Sample A Female 12.8
Sample B Female 18.4
Sample C Male 15.7
Sample D Male 19.3
Periaqueductal gray
nTPM: 19.7
Samples: 3

Max nTPM: 21.5
Min nTPM: 17.5
Sample B Female 20.2
Sample C Male 17.5
Sample D Male 21.5
Superior colliculi
nTPM: 16.0
Samples: 4

Max nTPM: 18.7
Min nTPM: 12.6
Sample A Female 12.6
Sample B Female 18.7
Sample C Male 16.6
Sample D Male 16.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 9.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.7
Samples: 4

Max nTPM: 11.9
Min nTPM: 5.5
Sample A Male 11.9
Sample B Male 11.6
Sample C Female 5.5
Sample D Female 9.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70194898 Antisense, RP_050517_02_A03, Mouse strain C57BL/6J (56 days, male) 0.1

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