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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF181 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
144.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
399.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
358.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
351.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
332.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
321.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
312.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
303.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
302.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
302.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
294.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
289.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
284.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
283.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
277.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
276.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
261.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
261.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
260.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
258.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
256.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
253.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
253.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
252.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
248.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
244.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
241.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
237.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
235.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
230.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
226.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
226.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
225.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
224.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
223.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
221.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
220.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
220.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
218.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
216.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
214.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
213.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
213.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
212.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
210.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
210.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
208.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
207.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
207.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
206.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
206.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
204.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
201.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
201.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
200.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
200.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
199.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
198.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
196.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
195.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
194.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
193.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
193.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
193.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
193.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
190.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
190.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
186.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
186.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
185.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
184.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
183.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
182.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
181.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
181.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
180.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
180.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
178.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
175.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
174.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
174.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
173.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
171.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
170.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
170.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
170.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
170.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
169.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
167.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
167.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
167.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
166.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
165.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
165.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
165.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
164.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
164.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
164.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
163.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
163.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
162.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
161.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
161.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
160.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
160.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
160.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
159.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
159.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
159.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
158.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
158.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
158.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
157.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
157.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
157.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
157.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
157.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
157.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
156.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
156.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
156.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
156.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
156.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
155.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
155.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
155.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
154.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
154.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
153.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
152.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
152.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
151.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
149.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
148.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
148.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
148.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
147.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
147.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
146.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
146.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
146.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
146.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
145.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
145.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
145.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
145.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
144.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
144.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
143.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
142.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
142.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
142.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
142.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
142.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
142.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
142.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
142.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
141.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
141.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
141.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
141.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
140.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
140.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
140.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
140.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
140.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
139.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
139.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
139.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
139.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
139.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
139.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
138.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
138.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
138.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
138.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
137.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
137.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
137.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
136.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
136.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
135.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
135.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
135.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
135.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
134.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
134.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
134.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
133.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
133.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
132.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
132.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
131.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
130.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
130.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
130.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
130.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
129.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
129.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
129.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
128.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
128.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
128.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
127.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
127.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
127.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
127.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
127.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
127.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
126.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
126.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
125.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
125.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
125.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
124.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
124.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
123.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
123.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
123.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
123.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
123.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
122.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
121.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
121.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
120.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
120.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
120.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
120.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
119.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
119.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
119.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
119.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
118.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
118.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
117.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
116.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
116.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
116.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
115.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
115.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
115.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
115.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
114.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
114.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
114.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
112.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
111.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
111.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
110.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
110.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
110.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
109.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
109.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
108.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
107.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
107.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
107.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
106.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
106.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
105.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
105.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
104.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
104.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
104.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
104.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
104.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
104.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
104.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
104.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
103.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
103.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
103.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
103.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
102.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
102.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
102.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
101.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
101.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
100.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
99.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
99.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
99.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
99.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
99.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
99.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
99.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
98.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
98.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
97.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
96.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
96.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
96.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
96.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
96.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
96.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
95.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
94.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
94.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
94.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
94.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
94.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
93.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
92.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
92.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
92.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
91.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
91.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
90.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
90.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
90.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
90.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
90.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
89.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
89.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
88.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
88.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
87.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
86.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
85.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
85.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
84.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
84.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
84.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
83.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
83.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
82.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
82.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
80.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
80.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
79.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
79.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
79.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
78.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
78.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
78.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
78.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
77.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
77.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
77.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
76.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
76.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
74.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
73.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
73.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
72.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
72.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
72.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
71.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
71.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
71.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
70.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
70.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
70.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
69.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
68.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
67.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
66.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
65.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
63.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
61.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
58.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
56.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF181 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
91.5
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
499.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
276.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
237.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
226.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
190.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
184.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
182.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
182.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
179.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
176.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
173.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
165.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
161.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
160.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
155.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
153.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
152.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
151.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
150.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
148.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
147.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
147.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
145.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
144.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
143.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
141.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
139.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
131.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
130.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
130.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
128.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
127.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
126.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
125.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
125.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
123.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
123.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
123.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
122.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
121.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
121.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
121.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
121.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
121.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
120.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
117.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
116.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
114.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
113.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
113.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
112.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
111.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
109.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
108.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
108.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
106.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
106.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
106.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
106.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
106.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
105.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
103.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
103.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
102.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
102.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
100.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
100.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
100.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
99.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
98.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
98.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
97.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
97.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
97.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
95.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
95.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
94.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
94.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
93.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
93.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
92.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
92.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
92.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
92.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
92.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
92.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
91.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
91.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
91.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
91.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
90.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
89.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
87.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
87.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
86.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
86.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
86.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
85.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
85.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
84.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
84.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
84.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
84.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
84.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
83.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
83.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
83.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
82.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
81.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
81.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
81.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
80.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
80.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
80.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
80.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
80.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
79.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
79.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
78.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
78.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
78.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
77.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
77.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
76.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
76.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
76.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
76.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
76.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
75.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
75.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
75.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
74.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
74.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
74.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
74.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
74.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
74.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
73.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
73.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
73.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
73.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
72.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
72.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
71.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
71.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
71.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
70.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
70.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
70.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
69.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
69.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
69.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
69.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
69.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
68.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
68.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
68.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
67.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
67.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
67.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
67.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
67.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
67.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
66.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
66.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
66.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
66.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
65.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
65.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
64.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
64.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
64.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
64.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
64.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
64.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
63.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
63.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
63.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
63.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
62.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
61.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
61.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
61.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
61.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
61.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
61.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
60.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
60.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
59.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
59.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
59.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
58.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
58.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
58.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
57.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
57.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
57.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
56.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
56.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
56.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
56.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
56.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
56.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
56.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
56.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
55.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
55.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
55.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
53.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
53.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
53.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
52.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
52.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
52.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
50.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
50.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
50.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
50.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
48.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
48.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
47.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
46.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
46.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
46.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
45.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
44.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
44.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
42.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
41.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
40.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
24.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
477
Tumor
1.8
951
Tumor
1.7
937
Tumor
1.4
925
Tumor
1.3
553
Tumor
1.2
473
Tumor
1.1
883
Tumor
1.0
527
Tumor
1.0
641
Tumor
0.9
695
Tumor
0.8
415
Tumor
0.8
231
Tumor
0.7
515
Tumor
0.7
1027
Tumor
0.7
363
Tumor
0.7
963
Tumor
0.6
563
Tumor
0.6
387
Tumor
0.6
817
Tumor
0.6
724
Normal
0.6
227
Tumor
0.6
685
Tumor
0.5
911
Tumor
0.5
431
Tumor
0.5
123
Tumor
0.5
965
Tumor
0.5
471
Tumor
0.5
915
Tumor
0.5
755
Tumor
0.5
443
Tumor
0.5
571
Tumor
0.4
617
Tumor
0.4
357
Tumor
0.4
697
Tumor
0.4
341
Tumor
0.4
267
Tumor
0.4
413
Tumor
0.4
923
Tumor
0.4
112
Tumor
0.4
261
Tumor
0.4
983
Tumor
0.4
1021
Tumor
0.4
221
Tumor
0.4
1045
Tumor
0.4
483
Tumor
0.4
785
Tumor
0.4
525
Tumor
0.4
297
Tumor
0.3
881
Tumor
0.3
1043
Tumor
0.3
663
Tumor
0.3
278
Normal
0.3
478
Normal
0.3
861
Tumor
0.3
952
Normal
0.3
498
Normal
0.3
451
Tumor
0.3
568
Normal
0.3
921
Tumor
0.3
1032
Normal
0.3
536
Normal
0.3
982
Normal
0.3
171
Tumor
0.3
955
Tumor
0.3
455
Tumor
0.3
435
Tumor
0.3
298
Normal
0.3
944
Normal
0.2
484
Normal
0.2
715
Tumor
0.2
465
Tumor
0.2
1041
Tumor
0.2
493
Tumor
0.2
938
Normal
0.2
355
Tumor
0.2
574
Normal
0.2
698
Normal
0.2
967
Tumor
0.2
1026
Normal
0.2
954
Normal
0.2
978
Normal
0.2
546
Normal
0.2
953
Tumor
0.2
926
Normal
0.2
977
Tumor
0.2
756
Normal
0.2
127
Tumor
0.2
535
Tumor
0.2
778
Normal
0.2
912
Normal
0.2
128
Normal
0.2
857
Tumor
0.2
858
Normal
0.2
1013
Tumor
0.2
714
Normal
0.2
411
Tumor
0.2
412
Normal
0.2
327
Tumor
0.2
271
Tumor
0.2
882
Normal
0.2
746
Normal
0.2
1028
Normal
0.2
488
Normal
0.2
416
Normal
0.2
647
Tumor
0.2
332
Normal
0.2
1044
Normal
0.2
672
Normal
0.2
494
Normal
0.2
195
Tumor
0.1
135
Tumor
0.1
1031
Tumor
0.1
331
Tumor
0.1
975
Tumor
0.1
445
Tumor
0.1
482
Normal
0.1
966
Normal
0.1
211
Tumor
0.1
918
Normal
0.1
141
Tumor
0.1
823
Tumor
0.1
976
Normal
0.1
884
Normal
0.1
665
Tumor
0.1
367
Tumor
0.1
922
Normal
0.1
1022
Normal
0.1
696
Normal
0.1
1016
Normal
0.1
554
Normal
0.1
737
Tumor
0.1
616
Normal
0.1
353
Tumor
0.1
557
Tumor
0.1
984
Normal
0.1
538
Normal
0.1
534
Normal
0.1
466
Normal
0.1
383
Tumor
0.1
481
Tumor
0.1
533
Tumor
0.1
545
Tumor
0.1
492
Normal
0.1
917
Tumor
0.1
866
Normal
0.1
824
Normal
0.1
924
Normal
0.1
878
Normal
0.1
786
Normal
0.1
964
Normal
0.1
114
Normal
0.1
137
Tumor
0.1
914
Normal
0.1
722
Normal
0.1
916
Normal
0.1
356
Normal
0.0
131
Tumor
0.0
448
Normal
0.0
468
Normal
0.0
472
Normal
0.0
1046
Normal
0.0
124
Normal
0.0
558
Normal
0.0
111
Normal
0.0
364
Normal
0.0
528
Normal
0.0
745
Tumor
0.0
1014
Normal
0.0
376
Normal
0.0
723
Tumor
0.0
1042
Normal
0.0
728
Normal
0.0
497
Tumor
0.0
516
Normal
0.0
1025
Tumor
0.0
214
Normal
0.0
862
Normal
0.0
873
Tumor
0.0
818
Normal
0.0
462
Normal
0.0
913
Tumor
0.0
572
Normal
0.0
446
Normal
0.0
191
Tumor
0.0
213
Tumor
0.0
277
Tumor
0.0
444
Normal
0.0
814
Normal
0.0
474
Normal
0.0
222
Normal
0.0
461
Tumor
0.0
738
Normal
0.0
627
Tumor
0.0
513
Tumor
0.0
1015
Tumor
0.0
232
Normal
0.0
742
Normal
0.0
391
Tumor
0.0
268
Normal
0.0
741
Tumor
0.0
524
Normal
0.0
224
Normal
0.0
662
Normal
0.0
467
Tumor
0.0
132
Normal
0.0
185
Tumor
0.0
395
Tumor
0.0
456
Normal
0.0
223
Tumor
0.0
312
Normal
0.0
813
Tumor
0.0
958
Normal
0.0
386
Normal
0.0
664
Normal
0.0
447
Tumor
0.0
196
Normal
0.0
628
Normal
0.0
142
Normal
0.0
433
Tumor
0.0
192
Normal
0.0
423
Tumor
0.0
136
Normal
-0.1
392
Normal
-0.1
228
Normal
-0.1
852
Normal
-0.1
187
Tumor
-0.1
113
Tumor
-0.1
518
Normal
-0.1
426
Normal
-0.1
716
Normal
-0.1
217
Tumor
-0.1
635
Tumor
-0.1
145
Tumor
-0.1
877
Tumor
-0.1
956
Normal
-0.1
851
Tumor
-0.1
815
Tumor
-0.1
314
Normal
-0.1
713
Tumor
-0.1
352
Normal
-0.1
514
Normal
-0.1
864
Normal
-0.1
284
Normal
-0.1
311
Tumor
-0.1
272
Normal
-0.1
427
Tumor
-0.1
865
Tumor
-0.1
385
Tumor
-0.1
661
Tumor
-0.1
432
Normal
-0.1
943
Tumor
-0.1
434
Normal
-0.1
218
Normal
-0.1
618
Normal
-0.1
258
Normal
-0.1
463
Tumor
-0.1
414
Normal
-0.1
642
Normal
-0.1
425
Tumor
-0.1
328
Normal
-0.1
968
Normal
-0.1
573
Tumor
-0.1
361
Tumor
-0.1
388
Normal
-0.1
186
Normal
-0.2
396
Normal
-0.2
138
Normal
-0.2
365
Tumor
-0.2
212
Normal
-0.2
394
Normal
-0.2
816
Normal
-0.2
867
Tumor
-0.2
262
Normal
-0.2
368
Normal
-0.2
146
Normal
-0.2
421
Tumor
-0.2
721
Tumor
-0.2
537
Tumor
-0.2
148
Normal
-0.2
744
Normal
-0.2
777
Tumor
-0.2
366
Normal
-0.2
422
Normal
-0.2
375
Tumor
-0.2
666
Normal
-0.2
452
Normal
-0.2
981
Tumor
-0.2
436
Normal
-0.2
517
Tumor
-0.2
384
Normal
-0.2
126
Normal
-0.2
564
Normal
-0.2
526
Normal
-0.2
428
Normal
-0.2
863
Tumor
-0.3
567
Tumor
-0.3
648
Normal
-0.3
424
Normal
-0.3
161
Tumor
-0.3
344
Normal
-0.3
354
Normal
-0.3
874
Normal
-0.3
351
Tumor
-0.3
286
Normal
-0.3
147
Tumor
-0.3
285
Tumor
-0.3
686
Normal
-0.3
342
Normal
-0.3
868
Normal
-0.3
188
Normal
-0.3
523
Tumor
-0.3
464
Normal
-0.3
257
Tumor
-0.3
162
Normal
-0.3
393
Tumor
-0.4
636
Normal
-0.4
615
Tumor
-0.4
727
Tumor
-0.4
487
Tumor
-0.4
491
Tumor
-0.4
362
Normal
-0.4
172
Normal
-0.4
283
Tumor
-0.4
743
Tumor
-0.5
313
Tumor
-0.5
671
Tumor
-0.6
125
Tumor
-0.6
957
Tumor
-0.6
358
Normal
-0.6
343
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.