We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TNIP2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
58.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
38.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
38.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
38.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
37.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
37.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
36.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
36.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
36.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
35.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
31.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
31.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
31.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
30.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
30.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
30.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
30.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
29.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
28.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
28.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
28.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
27.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
27.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
26.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
26.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
26.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
26.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
25.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
25.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
25.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
25.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
25.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
25.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
24.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
24.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
24.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
23.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
23.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
23.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
22.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
22.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
22.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
21.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
21.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
21.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
21.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
21.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
20.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
20.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
20.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
20.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
20.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
20.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
20.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
20.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
20.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
20.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
20.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
20.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
19.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
19.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
19.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
18.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
18.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
18.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
18.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
18.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
18.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
17.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
17.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
17.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
17.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
17.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
17.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
17.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
17.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
16.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
15.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
15.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
15.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
15.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
15.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
15.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
15.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
14.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
14.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
14.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
13.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
13.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
13.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
13.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
12.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
12.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
12.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
11.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TNIP2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.5
Number of samples
231
Samples
Sample
Description
TPM
DO45277
0 years, male, NA, stage:3, alive, 600 days
61.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
60.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
55.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
52.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
44.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
43.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
42.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
41.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
36.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
33.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
33.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
33.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
32.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
32.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
32.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
31.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
31.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
31.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
31.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
31.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
31.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
30.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
29.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
28.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
27.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
27.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
27.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
27.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
26.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
26.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
26.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
25.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
25.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
25.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
23.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
23.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
23.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
23.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
23.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
23.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
22.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
22.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
22.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
21.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
21.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
21.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
21.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
21.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
21.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
21.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
20.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
20.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
19.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
19.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
18.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
18.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
16.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
16.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
16.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
145
Tumor
1.6
388
Normal
0.9
343
Tumor
0.8
131
Tumor
0.7
396
Normal
0.6
394
Normal
0.6
958
Normal
0.6
426
Normal
0.6
498
Normal
0.5
915
Tumor
0.5
375
Tumor
0.5
917
Tumor
0.5
1041
Tumor
0.5
368
Normal
0.5
686
Normal
0.5
332
Normal
0.5
384
Normal
0.5
383
Tumor
0.5
191
Tumor
0.4
192
Normal
0.4
743
Tumor
0.4
937
Tumor
0.4
492
Normal
0.4
278
Normal
0.4
146
Normal
0.4
171
Tumor
0.4
195
Tumor
0.4
392
Normal
0.4
386
Normal
0.4
125
Tumor
0.4
126
Normal
0.4
661
Tumor
0.4
311
Tumor
0.4
218
Normal
0.4
414
Normal
0.4
366
Normal
0.4
724
Normal
0.4
424
Normal
0.4
128
Normal
0.3
911
Tumor
0.3
142
Normal
0.3
428
Normal
0.3
391
Tumor
0.3
261
Tumor
0.3
816
Normal
0.3
425
Tumor
0.3
1044
Normal
0.3
361
Tumor
0.3
362
Normal
0.3
914
Normal
0.3
365
Tumor
0.3
224
Normal
0.3
147
Tumor
0.3
814
Normal
0.3
536
Normal
0.3
966
Normal
0.3
943
Tumor
0.3
141
Tumor
0.3
188
Normal
0.3
422
Normal
0.3
964
Normal
0.3
136
Normal
0.2
123
Tumor
0.2
138
Normal
0.2
963
Tumor
0.2
975
Tumor
0.2
127
Tumor
0.2
376
Normal
0.2
976
Normal
0.2
977
Tumor
0.2
727
Tumor
0.2
434
Normal
0.2
491
Tumor
0.2
262
Normal
0.2
641
Tumor
0.2
312
Normal
0.2
968
Normal
0.2
421
Tumor
0.2
956
Normal
0.2
444
Normal
0.2
196
Normal
0.2
916
Normal
0.2
462
Normal
0.2
1045
Tumor
0.2
297
Tumor
0.2
715
Tumor
0.2
432
Normal
0.2
217
Tumor
0.2
213
Tumor
0.2
298
Normal
0.2
446
Normal
0.2
452
Normal
0.2
628
Normal
0.2
1046
Normal
0.2
185
Tumor
0.2
214
Normal
0.2
427
Tumor
0.2
817
Tumor
0.1
926
Normal
0.1
124
Normal
0.1
393
Tumor
0.1
344
Normal
0.1
328
Normal
0.1
135
Tumor
0.1
268
Normal
0.1
283
Tumor
0.1
114
Normal
0.1
331
Tumor
0.1
351
Tumor
0.1
314
Normal
0.1
187
Tumor
0.1
387
Tumor
0.1
954
Normal
0.1
636
Normal
0.1
423
Tumor
0.1
981
Tumor
0.1
913
Tumor
0.1
1014
Normal
0.1
494
Normal
0.1
211
Tumor
0.1
286
Normal
0.1
352
Normal
0.1
1016
Normal
0.1
672
Normal
0.1
367
Tumor
0.1
488
Normal
0.1
665
Tumor
0.1
1028
Normal
0.1
148
Normal
0.1
815
Tumor
0.1
778
Normal
0.1
538
Normal
0.1
744
Normal
0.1
271
Tumor
0.1
524
Normal
0.0
858
Normal
0.0
493
Tumor
0.0
212
Normal
0.0
111
Normal
0.0
867
Tumor
0.0
982
Normal
0.0
723
Tumor
0.0
354
Normal
0.0
557
Tumor
0.0
955
Tumor
0.0
223
Tumor
0.0
983
Tumor
0.0
852
Normal
0.0
267
Tumor
0.0
162
Normal
0.0
617
Tumor
0.0
137
Tumor
0.0
313
Tumor
0.0
857
Tumor
0.0
823
Tumor
0.0
1015
Tumor
0.0
818
Normal
0.0
395
Tumor
0.0
546
Normal
0.0
642
Normal
0.0
113
Tumor
0.0
965
Tumor
0.0
1025
Tumor
0.0
231
Tumor
0.0
786
Normal
0.0
881
Tumor
0.0
938
Normal
0.0
741
Tumor
0.0
468
Normal
0.0
553
Tumor
0.0
572
Normal
0.0
172
Normal
0.0
944
Normal
-0.1
957
Tumor
-0.1
738
Normal
-0.1
228
Normal
-0.1
1031
Tumor
-0.1
953
Tumor
-0.1
447
Tumor
-0.1
284
Normal
-0.1
728
Normal
-0.1
918
Normal
-0.1
756
Normal
-0.1
952
Normal
-0.1
922
Normal
-0.1
258
Normal
-0.1
1043
Tumor
-0.1
222
Normal
-0.1
755
Tumor
-0.1
528
Normal
-0.1
526
Normal
-0.1
737
Tumor
-0.1
984
Normal
-0.1
878
Normal
-0.1
573
Tumor
-0.1
483
Tumor
-0.1
132
Normal
-0.1
385
Tumor
-0.1
161
Tumor
-0.1
413
Tumor
-0.1
186
Normal
-0.1
877
Tumor
-0.1
514
Normal
-0.1
464
Normal
-0.1
272
Normal
-0.1
574
Normal
-0.2
671
Tumor
-0.2
277
Tumor
-0.2
662
Normal
-0.2
664
Normal
-0.2
978
Normal
-0.2
232
Normal
-0.2
742
Normal
-0.2
951
Tumor
-0.2
813
Tumor
-0.2
342
Normal
-0.2
722
Normal
-0.2
924
Normal
-0.2
436
Normal
-0.2
1027
Tumor
-0.2
448
Normal
-0.2
745
Tumor
-0.2
484
Normal
-0.2
1026
Normal
-0.2
866
Normal
-0.2
554
Normal
-0.2
257
Tumor
-0.2
861
Tumor
-0.2
357
Tumor
-0.2
697
Tumor
-0.2
431
Tumor
-0.2
883
Tumor
-0.2
884
Normal
-0.2
1042
Normal
-0.2
534
Normal
-0.2
568
Normal
-0.2
545
Tumor
-0.2
497
Tumor
-0.2
618
Normal
-0.3
663
Tumor
-0.3
921
Tumor
-0.3
563
Tumor
-0.3
285
Tumor
-0.3
535
Tumor
-0.3
445
Tumor
-0.3
567
Tumor
-0.3
1022
Normal
-0.3
721
Tumor
-0.3
358
Normal
-0.3
824
Normal
-0.3
874
Normal
-0.3
221
Tumor
-0.3
515
Tumor
-0.3
666
Normal
-0.3
415
Tumor
-0.3
851
Tumor
-0.3
864
Normal
-0.3
967
Tumor
-0.3
882
Normal
-0.3
716
Normal
-0.3
451
Tumor
-0.3
746
Normal
-0.3
327
Tumor
-0.4
696
Normal
-0.4
868
Normal
-0.4
516
Normal
-0.4
456
Normal
-0.4
627
Tumor
-0.4
433
Tumor
-0.4
1032
Normal
-0.4
785
Tumor
-0.4
112
Tumor
-0.4
912
Normal
-0.4
517
Tumor
-0.4
227
Tumor
-0.4
523
Tumor
-0.4
443
Tumor
-0.4
416
Normal
-0.4
564
Normal
-0.4
925
Tumor
-0.4
713
Tumor
-0.4
616
Normal
-0.4
698
Normal
-0.5
356
Normal
-0.5
714
Normal
-0.5
355
Tumor
-0.5
537
Tumor
-0.5
923
Tumor
-0.5
364
Normal
-0.5
435
Tumor
-0.5
518
Normal
-0.5
341
Tumor
-0.5
513
Tumor
-0.5
862
Normal
-0.5
571
Tumor
-0.5
648
Normal
-0.6
527
Tumor
-0.6
353
Tumor
-0.6
412
Normal
-0.6
455
Tumor
-0.6
1013
Tumor
-0.6
685
Tumor
-0.7
1021
Tumor
-0.7
466
Normal
-0.7
487
Tumor
-0.7
525
Tumor
-0.7
863
Tumor
-0.7
558
Normal
-0.7
615
Tumor
-0.7
647
Tumor
-0.7
467
Tumor
-0.7
461
Tumor
-0.7
533
Tumor
-0.8
695
Tumor
-0.8
363
Tumor
-0.8
873
Tumor
-0.8
865
Tumor
-0.9
465
Tumor
-0.9
635
Tumor
-1.0
472
Normal
-1.0
777
Tumor
-1.0
482
Normal
-1.1
474
Normal
-1.1
411
Tumor
-1.2
463
Tumor
-1.2
481
Tumor
-1.2
471
Tumor
-1.2
478
Normal
-1.3
477
Tumor
-1.4
473
Tumor
-1.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
