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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
USP39 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
43.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
41.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
40.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
39.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
33.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
31.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
31.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
28.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
28.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
27.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
27.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
27.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
27.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
26.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
26.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
25.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
25.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
24.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
23.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
23.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
22.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
22.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
21.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
21.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
21.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
21.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
20.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
20.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
20.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
20.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
19.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
19.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
18.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
18.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
18.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
18.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
17.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
17.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
16.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
13.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
13.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
13.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
11.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
11.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
USP39 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.5
Number of samples
231
Samples
Sample
Description
TPM
DO45193
0 years, female, NA, stage:4, dead, 120 days
44.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
39.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
36.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
35.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
33.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
32.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
31.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
31.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
31.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
30.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
29.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
28.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
28.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
28.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
28.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
28.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
27.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
27.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
27.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
27.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
27.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
27.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
26.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
26.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
25.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
25.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
25.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
25.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
25.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
24.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
24.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
23.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
23.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
23.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
23.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
22.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
22.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
22.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
22.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
22.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
22.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
22.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
22.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
22.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
22.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
21.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
21.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
21.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
21.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
21.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
21.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
21.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
21.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
20.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
20.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
20.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
20.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
19.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
19.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
18.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
18.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
18.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
18.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
17.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
17.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
15.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
15.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
15.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
14.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
14.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
331
Tumor
1.1
743
Tumor
1.0
967
Tumor
0.9
1031
Tumor
0.9
537
Tumor
0.8
367
Tumor
0.7
951
Tumor
0.7
131
Tumor
0.7
567
Tumor
0.7
221
Tumor
0.7
497
Tumor
0.7
351
Tumor
0.7
341
Tumor
0.7
695
Tumor
0.7
123
Tumor
0.6
517
Tumor
0.6
983
Tumor
0.6
285
Tumor
0.6
357
Tumor
0.6
671
Tumor
0.6
313
Tumor
0.6
425
Tumor
0.6
533
Tumor
0.6
661
Tumor
0.6
271
Tumor
0.6
1013
Tumor
0.6
965
Tumor
0.6
865
Tumor
0.6
431
Tumor
0.5
443
Tumor
0.5
545
Tumor
0.5
1021
Tumor
0.5
413
Tumor
0.5
387
Tumor
0.5
515
Tumor
0.5
161
Tumor
0.5
523
Tumor
0.4
385
Tumor
0.4
411
Tumor
0.4
483
Tumor
0.4
641
Tumor
0.4
553
Tumor
0.4
921
Tumor
0.4
647
Tumor
0.4
141
Tumor
0.4
817
Tumor
0.4
535
Tumor
0.4
423
Tumor
0.4
513
Tumor
0.4
923
Tumor
0.4
355
Tumor
0.4
427
Tumor
0.4
975
Tumor
0.4
463
Tumor
0.4
277
Tumor
0.4
473
Tumor
0.4
663
Tumor
0.4
487
Tumor
0.4
977
Tumor
0.4
465
Tumor
0.4
297
Tumor
0.3
112
Tumor
0.3
937
Tumor
0.3
375
Tumor
0.3
527
Tumor
0.3
665
Tumor
0.3
467
Tumor
0.3
135
Tumor
0.3
227
Tumor
0.3
635
Tumor
0.3
435
Tumor
0.3
727
Tumor
0.3
877
Tumor
0.3
471
Tumor
0.3
447
Tumor
0.3
171
Tumor
0.3
445
Tumor
0.3
815
Tumor
0.3
957
Tumor
0.3
813
Tumor
0.3
943
Tumor
0.3
953
Tumor
0.3
925
Tumor
0.3
737
Tumor
0.3
383
Tumor
0.3
883
Tumor
0.2
267
Tumor
0.2
433
Tumor
0.2
211
Tumor
0.2
365
Tumor
0.2
881
Tumor
0.2
573
Tumor
0.2
715
Tumor
0.2
563
Tumor
0.2
777
Tumor
0.2
391
Tumor
0.2
137
Tumor
0.2
477
Tumor
0.2
571
Tumor
0.2
147
Tumor
0.2
785
Tumor
0.2
724
Normal
0.2
125
Tumor
0.2
395
Tumor
0.2
393
Tumor
0.2
185
Tumor
0.2
814
Normal
0.2
187
Tumor
0.2
685
Tumor
0.2
361
Tumor
0.2
455
Tumor
0.2
525
Tumor
0.1
1015
Tumor
0.1
451
Tumor
0.1
461
Tumor
0.1
127
Tumor
0.1
615
Tumor
0.1
963
Tumor
0.1
493
Tumor
0.1
231
Tumor
0.1
1025
Tumor
0.1
867
Tumor
0.1
257
Tumor
0.1
415
Tumor
0.1
191
Tumor
0.1
217
Tumor
0.0
873
Tumor
0.0
721
Tumor
0.0
386
Normal
0.0
434
Normal
0.0
911
Tumor
0.0
851
Tumor
0.0
491
Tumor
0.0
384
Normal
0.0
557
Tumor
0.0
145
Tumor
0.0
343
Tumor
0.0
213
Tumor
0.0
1043
Tumor
0.0
146
Normal
0.0
421
Tumor
0.0
368
Normal
0.0
298
Normal
0.0
327
Tumor
0.0
861
Tumor
0.0
627
Tumor
0.0
261
Tumor
0.0
913
Tumor
0.0
915
Tumor
0.0
283
Tumor
0.0
363
Tumor
0.0
917
Tumor
0.0
538
Normal
0.0
912
Normal
0.0
1041
Tumor
0.0
268
Normal
0.0
223
Tumor
0.0
444
Normal
0.0
311
Tumor
0.0
697
Tumor
0.0
392
Normal
0.0
344
Normal
0.0
744
Normal
-0.1
857
Tumor
-0.1
186
Normal
-0.1
755
Tumor
-0.1
113
Tumor
-0.1
741
Tumor
-0.1
534
Normal
-0.1
376
Normal
-0.1
516
Normal
-0.1
312
Normal
-0.1
524
Normal
-0.1
696
Normal
-0.1
138
Normal
-0.1
388
Normal
-0.1
148
Normal
-0.1
1032
Normal
-0.1
258
Normal
-0.1
188
Normal
-0.1
882
Normal
-0.1
352
Normal
-0.1
132
Normal
-0.1
232
Normal
-0.1
481
Tumor
-0.1
858
Normal
-0.1
314
Normal
-0.1
358
Normal
-0.1
526
Normal
-0.1
396
Normal
-0.1
1045
Tumor
-0.1
745
Tumor
-0.1
492
Normal
-0.1
713
Tumor
-0.1
353
Tumor
-0.1
278
Normal
-0.1
394
Normal
-0.1
498
Normal
-0.1
714
Normal
-0.1
981
Tumor
-0.1
272
Normal
-0.1
366
Normal
-0.1
192
Normal
-0.1
686
Normal
-0.1
666
Normal
-0.1
456
Normal
-0.1
172
Normal
-0.1
332
Normal
-0.1
142
Normal
-0.1
436
Normal
-0.1
446
Normal
-0.2
878
Normal
-0.2
554
Normal
-0.2
362
Normal
-0.2
536
Normal
-0.2
954
Normal
-0.2
162
Normal
-0.2
916
Normal
-0.2
468
Normal
-0.2
564
Normal
-0.2
716
Normal
-0.2
432
Normal
-0.2
662
Normal
-0.2
884
Normal
-0.2
1028
Normal
-0.2
426
Normal
-0.2
1027
Tumor
-0.2
262
Normal
-0.2
546
Normal
-0.2
924
Normal
-0.2
818
Normal
-0.2
514
Normal
-0.2
672
Normal
-0.2
1026
Normal
-0.2
1042
Normal
-0.2
976
Normal
-0.2
354
Normal
-0.2
528
Normal
-0.2
636
Normal
-0.2
484
Normal
-0.2
422
Normal
-0.2
195
Tumor
-0.2
823
Tumor
-0.2
494
Normal
-0.2
342
Normal
-0.2
518
Normal
-0.2
914
Normal
-0.2
1014
Normal
-0.2
863
Tumor
-0.2
966
Normal
-0.2
136
Normal
-0.2
114
Normal
-0.2
955
Tumor
-0.2
664
Normal
-0.2
464
Normal
-0.2
984
Normal
-0.2
616
Normal
-0.2
488
Normal
-0.2
642
Normal
-0.3
756
Normal
-0.3
738
Normal
-0.3
722
Normal
-0.3
982
Normal
-0.3
218
Normal
-0.3
574
Normal
-0.3
424
Normal
-0.3
224
Normal
-0.3
786
Normal
-0.3
1016
Normal
-0.3
964
Normal
-0.3
617
Tumor
-0.3
824
Normal
-0.3
478
Normal
-0.3
124
Normal
-0.3
412
Normal
-0.3
356
Normal
-0.3
648
Normal
-0.3
126
Normal
-0.3
328
Normal
-0.3
978
Normal
-0.3
938
Normal
-0.3
416
Normal
-0.3
926
Normal
-0.3
968
Normal
-0.3
572
Normal
-0.3
728
Normal
-0.3
364
Normal
-0.3
558
Normal
-0.3
958
Normal
-0.3
414
Normal
-0.3
742
Normal
-0.3
466
Normal
-0.3
462
Normal
-0.3
448
Normal
-0.3
852
Normal
-0.3
746
Normal
-0.3
1022
Normal
-0.3
944
Normal
-0.3
723
Tumor
-0.3
778
Normal
-0.3
228
Normal
-0.3
212
Normal
-0.3
628
Normal
-0.3
222
Normal
-0.3
922
Normal
-0.3
472
Normal
-0.3
918
Normal
-0.3
866
Normal
-0.3
111
Normal
-0.3
284
Normal
-0.3
452
Normal
-0.3
196
Normal
-0.4
214
Normal
-0.4
618
Normal
-0.4
428
Normal
-0.4
864
Normal
-0.4
862
Normal
-0.4
474
Normal
-0.4
1046
Normal
-0.4
874
Normal
-0.4
956
Normal
-0.4
568
Normal
-0.4
952
Normal
-0.4
482
Normal
-0.4
128
Normal
-0.4
698
Normal
-0.4
868
Normal
-0.4
286
Normal
-0.4
1044
Normal
-0.4
816
Normal
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
