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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CNNM3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
45.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
41.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
38.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
34.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
33.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
32.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
28.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
28.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
28.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
27.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
27.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
27.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
27.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
26.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
26.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
25.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
25.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
25.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
25.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
24.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
24.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
24.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
24.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
24.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
23.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
23.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
22.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
22.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
21.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
21.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
21.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
20.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
20.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
20.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
20.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
20.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
20.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
19.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
19.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
19.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
19.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
19.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
19.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
19.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
19.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
18.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
18.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
18.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
17.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
17.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
17.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
17.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
16.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
16.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
16.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
16.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
15.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
15.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
14.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
8.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
5.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CNNM3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.6
Number of samples
231
Samples
Sample
Description
TPM
DO23532
0 years, female, NA, stage:1, alive, 960 days
24.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
24.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
23.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
22.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
21.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
21.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
21.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
21.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
21.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
21.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
20.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
20.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
19.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
18.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
18.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
18.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
17.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
17.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
17.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
16.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
16.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
15.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
11.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
6.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
641
Tumor
1.0
285
Tumor
1.0
1031
Tumor
0.9
271
Tumor
0.8
357
Tumor
0.8
727
Tumor
0.8
463
Tumor
0.8
221
Tumor
0.8
423
Tumor
0.8
533
Tumor
0.7
553
Tumor
0.7
975
Tumor
0.7
363
Tumor
0.7
171
Tumor
0.7
571
Tumor
0.6
635
Tumor
0.6
413
Tumor
0.6
863
Tumor
0.6
435
Tumor
0.6
921
Tumor
0.6
445
Tumor
0.6
277
Tumor
0.6
967
Tumor
0.6
815
Tumor
0.5
777
Tumor
0.5
817
Tumor
0.5
513
Tumor
0.5
425
Tumor
0.5
161
Tumor
0.5
141
Tumor
0.5
785
Tumor
0.5
147
Tumor
0.5
428
Normal
0.4
471
Tumor
0.4
331
Tumor
0.4
497
Tumor
0.4
737
Tumor
0.4
515
Tumor
0.4
671
Tumor
0.4
1027
Tumor
0.4
482
Normal
0.4
414
Normal
0.3
227
Tumor
0.3
426
Normal
0.3
132
Normal
0.3
365
Tumor
0.3
786
Normal
0.3
433
Tumor
0.3
162
Normal
0.3
411
Tumor
0.3
148
Normal
0.3
462
Normal
0.3
1022
Normal
0.3
642
Normal
0.3
424
Normal
0.3
267
Tumor
0.3
314
Normal
0.3
422
Normal
0.2
443
Tumor
0.2
464
Normal
0.2
618
Normal
0.2
1025
Tumor
0.2
568
Normal
0.2
258
Normal
0.2
977
Tumor
0.2
484
Normal
0.2
983
Tumor
0.2
968
Normal
0.2
257
Tumor
0.2
915
Tumor
0.2
416
Normal
0.2
1046
Normal
0.2
534
Normal
0.2
472
Normal
0.2
868
Normal
0.2
127
Tumor
0.2
554
Normal
0.2
128
Normal
0.2
615
Tumor
0.2
481
Tumor
0.2
528
Normal
0.2
1045
Tumor
0.2
647
Tumor
0.2
1042
Normal
0.2
396
Normal
0.2
922
Normal
0.2
313
Tumor
0.2
873
Tumor
0.2
925
Tumor
0.2
187
Tumor
0.2
616
Normal
0.2
444
Normal
0.2
452
Normal
0.2
278
Normal
0.2
272
Normal
0.2
436
Normal
0.2
136
Normal
0.1
493
Tumor
0.1
617
Tumor
0.1
172
Normal
0.1
913
Tumor
0.1
951
Tumor
0.1
1028
Normal
0.1
665
Tumor
0.1
142
Normal
0.1
388
Normal
0.1
881
Tumor
0.1
487
Tumor
0.1
465
Tumor
0.1
461
Tumor
0.1
778
Normal
0.1
474
Normal
0.1
387
Tumor
0.1
385
Tumor
0.1
866
Normal
0.1
926
Normal
0.1
728
Normal
0.1
526
Normal
0.1
498
Normal
0.1
298
Normal
0.1
911
Tumor
0.1
356
Normal
0.1
328
Normal
0.1
884
Normal
0.1
648
Normal
0.1
867
Tumor
0.1
394
Normal
0.1
964
Normal
0.1
354
Normal
0.1
923
Tumor
0.1
218
Normal
0.1
742
Normal
0.1
186
Normal
0.1
196
Normal
0.1
344
Normal
0.1
343
Tumor
0.1
746
Normal
0.1
628
Normal
0.1
138
Normal
0.1
232
Normal
0.1
636
Normal
0.1
545
Tumor
0.1
1032
Normal
0.1
627
Tumor
0.1
341
Tumor
0.1
527
Tumor
0.1
716
Normal
0.1
944
Normal
0.1
111
Normal
0.1
954
Normal
0.1
456
Normal
0.1
185
Tumor
0.1
686
Normal
0.1
262
Normal
0.1
146
Normal
0.0
332
Normal
0.0
312
Normal
0.0
392
Normal
0.0
261
Tumor
0.0
114
Normal
0.0
376
Normal
0.0
342
Normal
0.0
722
Normal
0.0
446
Normal
0.0
824
Normal
0.0
466
Normal
0.0
432
Normal
0.0
231
Tumor
0.0
412
Normal
0.0
877
Tumor
0.0
1041
Tumor
0.0
874
Normal
0.0
664
Normal
0.0
966
Normal
0.0
516
Normal
0.0
672
Normal
0.0
212
Normal
0.0
358
Normal
0.0
916
Normal
0.0
467
Tumor
0.0
135
Tumor
0.0
698
Normal
0.0
864
Normal
0.0
924
Normal
0.0
523
Tumor
0.0
1014
Normal
0.0
696
Normal
0.0
963
Tumor
0.0
473
Tumor
0.0
514
Normal
0.0
367
Tumor
0.0
222
Normal
0.0
468
Normal
0.0
518
Normal
0.0
714
Normal
0.0
721
Tumor
0.0
558
Normal
0.0
368
Normal
0.0
953
Tumor
0.0
427
Tumor
0.0
1016
Normal
0.0
823
Tumor
0.0
882
Normal
0.0
952
Normal
0.0
918
Normal
0.0
386
Normal
0.0
188
Normal
0.0
976
Normal
0.0
286
Normal
0.0
574
Normal
0.0
738
Normal
0.0
1026
Normal
0.0
564
Normal
0.0
517
Tumor
0.0
744
Normal
0.0
192
Normal
0.0
538
Normal
0.0
883
Tumor
0.0
715
Tumor
0.0
572
Normal
0.0
362
Normal
0.0
268
Normal
0.0
858
Normal
0.0
878
Normal
-0.1
1021
Tumor
-0.1
131
Tumor
-0.1
483
Tumor
-0.1
124
Normal
-0.1
563
Tumor
-0.1
1015
Tumor
-0.1
958
Normal
-0.1
938
Normal
-0.1
965
Tumor
-0.1
912
Normal
-0.1
224
Normal
-0.1
434
Normal
-0.1
662
Normal
-0.1
982
Normal
-0.1
217
Tumor
-0.1
816
Normal
-0.1
978
Normal
-0.1
685
Tumor
-0.1
455
Tumor
-0.1
818
Normal
-0.1
862
Normal
-0.1
364
Normal
-0.1
195
Tumor
-0.1
352
Normal
-0.1
361
Tumor
-0.1
393
Tumor
-0.1
814
Normal
-0.1
914
Normal
-0.1
494
Normal
-0.1
663
Tumor
-0.1
666
Normal
-0.1
228
Normal
-0.1
756
Normal
-0.1
984
Normal
-0.1
937
Tumor
-0.1
492
Normal
-0.1
284
Normal
-0.1
384
Normal
-0.1
353
Tumor
-0.2
214
Normal
-0.2
478
Normal
-0.2
448
Normal
-0.2
852
Normal
-0.2
1044
Normal
-0.2
477
Tumor
-0.2
421
Tumor
-0.2
137
Tumor
-0.2
447
Tumor
-0.2
713
Tumor
-0.2
813
Tumor
-0.2
546
Normal
-0.2
723
Tumor
-0.2
223
Tumor
-0.2
745
Tumor
-0.2
145
Tumor
-0.2
857
Tumor
-0.2
451
Tumor
-0.2
395
Tumor
-0.2
415
Tumor
-0.2
297
Tumor
-0.3
191
Tumor
-0.3
126
Normal
-0.3
536
Normal
-0.3
488
Normal
-0.3
741
Tumor
-0.3
366
Normal
-0.3
661
Tumor
-0.3
955
Tumor
-0.3
557
Tumor
-0.3
351
Tumor
-0.3
112
Tumor
-0.3
755
Tumor
-0.3
743
Tumor
-0.3
724
Normal
-0.3
956
Normal
-0.3
573
Tumor
-0.3
355
Tumor
-0.3
1013
Tumor
-0.3
311
Tumor
-0.3
113
Tumor
-0.3
981
Tumor
-0.3
524
Normal
-0.4
943
Tumor
-0.4
865
Tumor
-0.4
567
Tumor
-0.4
861
Tumor
-0.4
535
Tumor
-0.4
391
Tumor
-0.4
851
Tumor
-0.4
695
Tumor
-0.4
917
Tumor
-0.5
491
Tumor
-0.5
537
Tumor
-0.5
375
Tumor
-0.5
957
Tumor
-0.5
213
Tumor
-0.5
697
Tumor
-0.5
327
Tumor
-0.6
125
Tumor
-0.6
431
Tumor
-0.6
383
Tumor
-0.6
525
Tumor
-0.7
283
Tumor
-0.7
1043
Tumor
-0.7
211
Tumor
-0.8
123
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
