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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SEMA4C is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
33.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
28.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
27.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
26.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
24.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
23.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
22.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
21.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
20.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
17.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
16.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
11.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
5.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
2.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SEMA4C is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.7
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
33.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
26.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
20.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
18.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
18.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
15.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
5.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
385
Tumor
1.2
285
Tumor
1.1
523
Tumor
1.0
877
Tumor
1.0
211
Tumor
0.9
425
Tumor
0.9
983
Tumor
0.9
1042
Normal
0.9
125
Tumor
0.8
517
Tumor
0.8
131
Tumor
0.7
387
Tumor
0.7
351
Tumor
0.7
393
Tumor
0.7
187
Tumor
0.7
145
Tumor
0.7
396
Normal
0.7
386
Normal
0.7
937
Tumor
0.7
185
Tumor
0.6
331
Tumor
0.6
188
Normal
0.6
814
Normal
0.6
186
Normal
0.6
642
Normal
0.6
367
Tumor
0.6
267
Tumor
0.6
172
Normal
0.6
343
Tumor
0.6
413
Tumor
0.5
698
Normal
0.5
553
Tumor
0.5
976
Normal
0.5
283
Tumor
0.5
162
Normal
0.5
391
Tumor
0.5
392
Normal
0.5
388
Normal
0.5
222
Normal
0.5
431
Tumor
0.5
447
Tumor
0.5
148
Normal
0.5
332
Normal
0.5
416
Normal
0.5
817
Tumor
0.5
271
Tumor
0.5
967
Tumor
0.5
813
Tumor
0.4
328
Normal
0.4
744
Normal
0.4
815
Tumor
0.4
482
Normal
0.4
141
Tumor
0.4
394
Normal
0.4
975
Tumor
0.4
513
Tumor
0.4
545
Tumor
0.4
722
Normal
0.4
478
Normal
0.4
464
Normal
0.4
574
Normal
0.4
964
Normal
0.4
364
Normal
0.4
881
Tumor
0.3
488
Normal
0.3
128
Normal
0.3
146
Normal
0.3
477
Tumor
0.3
1016
Normal
0.3
1046
Normal
0.3
921
Tumor
0.3
147
Tumor
0.3
851
Tumor
0.3
468
Normal
0.3
446
Normal
0.3
672
Normal
0.3
227
Tumor
0.3
228
Normal
0.3
866
Normal
0.3
943
Tumor
0.3
214
Normal
0.3
498
Normal
0.3
286
Normal
0.3
864
Normal
0.3
537
Tumor
0.3
956
Normal
0.3
1043
Tumor
0.3
462
Normal
0.3
436
Normal
0.3
196
Normal
0.3
218
Normal
0.3
536
Normal
0.2
356
Normal
0.2
223
Tumor
0.2
516
Normal
0.2
573
Tumor
0.2
456
Normal
0.2
111
Normal
0.2
525
Tumor
0.2
142
Normal
0.2
912
Normal
0.2
395
Tumor
0.2
984
Normal
0.2
743
Tumor
0.2
977
Tumor
0.2
534
Normal
0.2
465
Tumor
0.2
1014
Normal
0.2
363
Tumor
0.2
878
Normal
0.2
484
Normal
0.2
526
Normal
0.2
727
Tumor
0.2
312
Normal
0.2
463
Tumor
0.2
472
Normal
0.2
737
Tumor
0.2
918
Normal
0.2
427
Tumor
0.2
272
Normal
0.2
384
Normal
0.2
428
Normal
0.2
958
Normal
0.2
357
Tumor
0.2
538
Normal
0.2
262
Normal
0.2
467
Tumor
0.2
474
Normal
0.2
963
Tumor
0.2
161
Tumor
0.1
968
Normal
0.1
966
Normal
0.1
352
Normal
0.1
518
Normal
0.1
572
Normal
0.1
785
Tumor
0.1
415
Tumor
0.1
192
Normal
0.1
924
Normal
0.1
113
Tumor
0.1
455
Tumor
0.1
857
Tumor
0.1
412
Normal
0.1
494
Normal
0.1
138
Normal
0.1
313
Tumor
0.1
1028
Normal
0.1
778
Normal
0.1
358
Normal
0.1
952
Normal
0.1
978
Normal
0.1
944
Normal
0.1
434
Normal
0.1
926
Normal
0.1
862
Normal
0.1
492
Normal
0.1
514
Normal
0.1
1026
Normal
0.1
353
Tumor
0.1
777
Tumor
0.1
443
Tumor
0.1
341
Tumor
0.1
411
Tumor
0.1
1031
Tumor
0.1
1044
Normal
0.1
874
Normal
0.1
938
Normal
0.1
982
Normal
0.1
696
Normal
0.1
554
Normal
0.1
452
Normal
0.1
232
Normal
0.1
724
Normal
0.1
715
Tumor
0.1
314
Normal
0.1
171
Tumor
0.0
451
Tumor
0.0
344
Normal
0.0
922
Normal
0.0
493
Tumor
0.0
695
Tumor
0.0
957
Tumor
0.0
126
Normal
0.0
816
Normal
0.0
917
Tumor
0.0
466
Normal
0.0
923
Tumor
0.0
342
Normal
0.0
432
Normal
0.0
858
Normal
0.0
965
Tumor
0.0
756
Normal
0.0
327
Tumor
0.0
686
Normal
0.0
714
Normal
0.0
354
Normal
0.0
713
Tumor
0.0
132
Normal
0.0
868
Normal
0.0
424
Normal
0.0
212
Normal
0.0
355
Tumor
0.0
471
Tumor
0.0
882
Normal
0.0
564
Normal
0.0
955
Tumor
0.0
786
Normal
0.0
422
Normal
0.0
361
Tumor
0.0
135
Tumor
0.0
376
Normal
0.0
297
Tumor
0.0
277
Tumor
0.0
954
Normal
0.0
528
Normal
0.0
112
Tumor
0.0
224
Normal
0.0
671
Tumor
0.0
563
Tumor
0.0
1045
Tumor
0.0
685
Tumor
0.0
191
Tumor
0.0
818
Normal
0.0
745
Tumor
0.0
916
Normal
0.0
884
Normal
-0.1
728
Normal
-0.1
444
Normal
-0.1
311
Tumor
-0.1
527
Tumor
-0.1
217
Tumor
-0.1
114
Normal
-0.1
1013
Tumor
-0.1
278
Normal
-0.1
473
Tumor
-0.1
953
Tumor
-0.1
298
Normal
-0.1
824
Normal
-0.1
515
Tumor
-0.1
546
Normal
-0.1
533
Tumor
-0.1
284
Normal
-0.1
448
Normal
-0.1
618
Normal
-0.1
568
Normal
-0.1
487
Tumor
-0.1
366
Normal
-0.1
716
Normal
-0.1
426
Normal
-0.1
124
Normal
-0.1
221
Tumor
-0.1
558
Normal
-0.1
497
Tumor
-0.1
863
Tumor
-0.2
852
Normal
-0.2
433
Tumor
-0.2
268
Normal
-0.2
636
Normal
-0.2
445
Tumor
-0.2
883
Tumor
-0.2
421
Tumor
-0.2
746
Normal
-0.2
524
Normal
-0.2
648
Normal
-0.2
742
Normal
-0.2
461
Tumor
-0.2
873
Tumor
-0.2
697
Tumor
-0.2
127
Tumor
-0.2
123
Tumor
-0.2
738
Normal
-0.2
571
Tumor
-0.2
951
Tumor
-0.2
414
Normal
-0.2
1032
Normal
-0.2
666
Normal
-0.2
383
Tumor
-0.2
136
Normal
-0.3
723
Tumor
-0.3
981
Tumor
-0.3
617
Tumor
-0.3
823
Tumor
-0.3
914
Normal
-0.3
362
Normal
-0.3
664
Normal
-0.3
915
Tumor
-0.3
261
Tumor
-0.3
423
Tumor
-0.3
481
Tumor
-0.3
483
Tumor
-0.3
641
Tumor
-0.3
535
Tumor
-0.3
721
Tumor
-0.3
1015
Tumor
-0.3
1022
Normal
-0.3
435
Tumor
-0.3
628
Normal
-0.3
567
Tumor
-0.3
137
Tumor
-0.3
257
Tumor
-0.3
195
Tumor
-0.3
755
Tumor
-0.4
365
Tumor
-0.4
662
Normal
-0.4
1021
Tumor
-0.4
913
Tumor
-0.4
665
Tumor
-0.4
1025
Tumor
-0.4
861
Tumor
-0.4
635
Tumor
-0.4
925
Tumor
-0.4
557
Tumor
-0.4
616
Normal
-0.4
368
Normal
-0.5
627
Tumor
-0.5
258
Normal
-0.5
867
Tumor
-0.5
375
Tumor
-0.5
231
Tumor
-0.5
661
Tumor
-0.5
1041
Tumor
-0.5
491
Tumor
-0.6
615
Tumor
-0.6
741
Tumor
-0.6
213
Tumor
-0.6
647
Tumor
-0.6
911
Tumor
-0.7
663
Tumor
-0.7
1027
Tumor
-0.8
865
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
