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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NDUFS5 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
297.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1446.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
893.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
879.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
869.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
791.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
770.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
744.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
704.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
701.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
695.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
680.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
662.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
629.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
595.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
593.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
586.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
567.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
565.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
536.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
527.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
526.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
516.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
513.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
502.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
500.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
482.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
474.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
474.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
473.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
469.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
468.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
467.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
462.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
451.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
446.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
443.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
436.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
434.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
432.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
427.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
427.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
425.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
424.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
421.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
420.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
418.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
418.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
418.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
418.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
417.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
416.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
415.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
413.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
412.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
408.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
402.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
402.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
401.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
400.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
395.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
394.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
392.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
391.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
390.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
388.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
384.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
384.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
381.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
381.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
377.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
371.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
369.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
363.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
363.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
362.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
361.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
358.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
356.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
355.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
354.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
354.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
354.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
353.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
353.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
353.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
352.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
351.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
346.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
345.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
345.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
344.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
344.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
344.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
343.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
343.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
343.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
342.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
342.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
341.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
341.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
340.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
335.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
335.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
334.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
334.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
333.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
332.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
332.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
331.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
330.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
330.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
330.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
329.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
329.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
327.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
327.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
327.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
326.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
323.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
321.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
319.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
317.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
317.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
316.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
316.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
315.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
315.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
314.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
312.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
309.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
309.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
309.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
307.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
307.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
306.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
306.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
305.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
303.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
302.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
302.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
301.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
300.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
298.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
298.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
298.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
297.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
297.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
297.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
297.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
297.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
296.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
293.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
291.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
291.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
290.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
289.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
289.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
287.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
286.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
285.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
283.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
282.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
281.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
281.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
281.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
281.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
278.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
276.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
275.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
275.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
275.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
274.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
274.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
274.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
274.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
273.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
273.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
273.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
273.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
270.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
269.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
269.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
268.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
268.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
268.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
267.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
266.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
266.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
264.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
264.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
263.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
262.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
262.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
262.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
261.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
260.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
259.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
258.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
258.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
257.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
257.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
257.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
257.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
257.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
252.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
251.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
250.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
250.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
249.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
249.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
249.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
248.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
247.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
247.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
247.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
246.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
246.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
245.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
244.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
244.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
244.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
243.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
241.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
241.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
240.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
239.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
238.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
237.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
235.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
233.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
233.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
232.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
232.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
231.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
231.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
231.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
231.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
229.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
228.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
228.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
227.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
226.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
226.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
225.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
225.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
224.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
223.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
223.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
221.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
221.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
219.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
218.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
218.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
216.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
216.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
215.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
213.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
213.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
212.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
212.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
212.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
211.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
211.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
210.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
209.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
208.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
207.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
207.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
207.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
206.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
206.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
204.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
204.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
204.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
204.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
203.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
200.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
200.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
200.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
199.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
199.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
199.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
198.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
197.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
196.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
194.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
194.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
193.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
192.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
192.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
192.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
192.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
189.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
189.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
186.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
185.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
185.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
185.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
184.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
184.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
184.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
183.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
182.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
181.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
181.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
181.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
180.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
179.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
179.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
177.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
176.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
176.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
175.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
175.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
175.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
175.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
174.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
174.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
173.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
173.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
172.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
170.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
170.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
168.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
167.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
165.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
165.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
164.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
164.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
164.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
163.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
162.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
160.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
159.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
159.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
158.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
158.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
158.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
156.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
152.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
151.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
151.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
150.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
144.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
142.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
139.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
139.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
138.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
136.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
136.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
136.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
134.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
131.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
130.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
121.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
120.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
116.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
116.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
107.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
105.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
97.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NDUFS5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
178.0
Number of samples
231
Samples
Sample
Description
TPM
DO50814
0 years, male, NA, stage:3, alive, 420 days
566.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
456.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
436.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
423.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
402.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
396.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
396.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
395.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
393.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
380.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
355.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
352.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
350.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
342.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
335.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
333.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
333.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
329.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
327.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
321.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
321.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
316.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
312.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
309.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
299.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
298.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
294.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
294.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
293.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
290.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
290.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
285.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
282.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
275.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
271.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
266.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
265.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
261.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
258.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
254.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
244.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
239.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
236.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
230.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
228.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
224.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
224.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
224.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
220.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
219.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
218.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
217.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
217.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
217.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
215.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
214.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
214.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
212.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
211.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
207.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
207.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
207.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
206.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
201.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
201.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
200.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
199.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
199.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
199.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
199.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
198.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
197.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
194.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
193.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
191.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
189.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
188.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
187.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
185.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
184.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
184.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
181.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
181.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
181.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
180.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
179.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
178.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
177.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
176.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
176.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
176.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
174.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
174.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
172.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
171.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
170.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
168.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
167.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
166.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
166.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
165.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
164.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
163.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
163.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
162.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
161.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
161.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
161.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
161.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
158.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
158.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
158.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
158.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
157.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
157.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
157.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
157.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
157.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
156.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
155.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
154.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
153.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
152.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
150.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
150.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
149.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
148.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
148.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
147.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
145.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
144.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
144.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
143.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
143.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
143.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
142.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
142.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
142.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
141.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
141.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
141.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
141.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
140.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
140.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
139.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
139.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
138.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
137.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
136.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
135.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
135.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
135.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
134.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
133.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
133.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
132.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
131.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
131.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
131.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
129.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
127.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
127.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
126.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
126.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
125.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
122.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
120.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
119.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
119.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
119.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
118.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
118.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
117.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
116.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
116.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
116.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
115.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
115.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
115.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
115.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
114.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
112.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
112.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
112.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
112.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
112.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
110.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
109.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
109.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
109.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
107.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
107.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
107.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
105.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
105.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
104.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
104.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
102.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
102.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
102.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
101.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
100.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
99.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
98.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
97.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
97.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
96.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
95.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
93.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
92.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
91.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
90.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
89.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
87.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
85.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
83.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
83.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
80.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
80.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
79.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
74.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
68.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
67.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
66.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
65.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
56.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
55.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
54.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
51.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
46.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
31.8
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LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
473
Tumor
0.9
1041
Tumor
0.9
1043
Tumor
0.9
915
Tumor
0.8
327
Tumor
0.7
981
Tumor
0.7
922
Normal
0.6
1028
Normal
0.6
516
Normal
0.6
518
Normal
0.6
914
Normal
0.6
128
Normal
0.5
861
Tumor
0.5
554
Normal
0.5
484
Normal
0.5
878
Normal
0.5
358
Normal
0.5
816
Normal
0.5
448
Normal
0.5
214
Normal
0.5
952
Normal
0.5
926
Normal
0.4
738
Normal
0.4
162
Normal
0.4
642
Normal
0.4
636
Normal
0.4
278
Normal
0.4
698
Normal
0.4
728
Normal
0.4
1014
Normal
0.4
396
Normal
0.4
742
Normal
0.4
412
Normal
0.4
918
Normal
0.4
858
Normal
0.4
564
Normal
0.4
913
Tumor
0.4
342
Normal
0.3
911
Tumor
0.3
723
Tumor
0.3
546
Normal
0.3
572
Normal
0.3
355
Tumor
0.3
866
Normal
0.3
982
Normal
0.3
528
Normal
0.3
526
Normal
0.3
314
Normal
0.3
864
Normal
0.3
446
Normal
0.3
426
Normal
0.3
466
Normal
0.3
944
Normal
0.3
746
Normal
0.3
352
Normal
0.3
916
Normal
0.3
494
Normal
0.3
628
Normal
0.3
298
Normal
0.3
464
Normal
0.3
344
Normal
0.3
451
Tumor
0.3
617
Tumor
0.3
394
Normal
0.3
114
Normal
0.3
1022
Normal
0.3
171
Tumor
0.3
924
Normal
0.3
696
Normal
0.3
272
Normal
0.3
852
Normal
0.3
616
Normal
0.3
286
Normal
0.3
422
Normal
0.2
778
Normal
0.2
267
Tumor
0.2
232
Normal
0.2
111
Normal
0.2
874
Normal
0.2
222
Normal
0.2
312
Normal
0.2
388
Normal
0.2
487
Tumor
0.2
722
Normal
0.2
196
Normal
0.2
474
Normal
0.2
424
Normal
0.2
713
Tumor
0.2
984
Normal
0.2
258
Normal
0.2
228
Normal
0.2
212
Normal
0.2
557
Tumor
0.2
132
Normal
0.2
956
Normal
0.2
148
Normal
0.2
1026
Normal
0.2
958
Normal
0.2
262
Normal
0.2
715
Tumor
0.2
428
Normal
0.2
415
Tumor
0.2
284
Normal
0.2
955
Tumor
0.2
966
Normal
0.2
328
Normal
0.2
538
Normal
0.2
824
Normal
0.1
172
Normal
0.1
938
Normal
0.1
755
Tumor
0.1
695
Tumor
0.1
356
Normal
0.1
1032
Normal
0.1
867
Tumor
0.1
1016
Normal
0.1
392
Normal
0.1
362
Normal
0.1
818
Normal
0.1
416
Normal
0.1
482
Normal
0.1
968
Normal
0.1
231
Tumor
0.1
964
Normal
0.1
354
Normal
0.1
136
Normal
0.1
686
Normal
0.1
558
Normal
0.1
618
Normal
0.1
534
Normal
0.1
432
Normal
0.1
376
Normal
0.1
1021
Tumor
0.1
436
Normal
0.1
488
Normal
0.1
716
Normal
0.1
224
Normal
0.1
434
Normal
0.1
414
Normal
0.1
963
Tumor
0.1
1042
Normal
0.1
393
Tumor
0.1
268
Normal
0.1
553
Tumor
0.0
514
Normal
0.0
112
Tumor
0.0
188
Normal
0.0
714
Normal
0.0
386
Normal
0.0
965
Tumor
0.0
261
Tumor
0.0
978
Normal
0.0
452
Normal
0.0
124
Normal
0.0
366
Normal
0.0
218
Normal
0.0
364
Normal
0.0
456
Normal
0.0
571
Tumor
0.0
1031
Tumor
0.0
462
Normal
0.0
524
Normal
0.0
477
Tumor
0.0
341
Tumor
0.0
423
Tumor
0.0
223
Tumor
0.0
756
Normal
0.0
492
Normal
0.0
483
Tumor
0.0
127
Tumor
0.0
574
Normal
-0.1
468
Normal
-0.1
744
Normal
-0.1
497
Tumor
-0.1
1044
Normal
-0.1
957
Tumor
-0.1
142
Normal
-0.1
568
Normal
-0.1
697
Tumor
-0.1
472
Normal
-0.1
357
Tumor
-0.1
126
Normal
-0.1
786
Normal
-0.1
145
Tumor
-0.1
823
Tumor
-0.1
1015
Tumor
-0.1
977
Tumor
-0.1
567
Tumor
-0.1
525
Tumor
-0.1
138
Normal
-0.1
615
Tumor
-0.1
862
Normal
-0.2
113
Tumor
-0.2
135
Tumor
-0.2
527
Tumor
-0.2
445
Tumor
-0.2
873
Tumor
-0.2
1046
Normal
-0.2
976
Normal
-0.2
444
Normal
-0.2
923
Tumor
-0.2
146
Normal
-0.2
943
Tumor
-0.2
533
Tumor
-0.2
664
Normal
-0.2
221
Tumor
-0.2
332
Normal
-0.2
195
Tumor
-0.2
857
Tumor
-0.2
478
Normal
-0.2
536
Normal
-0.2
523
Tumor
-0.2
498
Normal
-0.2
868
Normal
-0.2
627
Tumor
-0.2
647
Tumor
-0.3
367
Tumor
-0.3
395
Tumor
-0.3
882
Normal
-0.3
721
Tumor
-0.3
368
Normal
-0.3
493
Tumor
-0.3
741
Tumor
-0.3
192
Normal
-0.3
743
Tumor
-0.3
491
Tumor
-0.3
648
Normal
-0.3
413
Tumor
-0.3
662
Normal
-0.3
217
Tumor
-0.3
881
Tumor
-0.3
351
Tumor
-0.3
975
Tumor
-0.3
131
Tumor
-0.3
954
Normal
-0.3
666
Normal
-0.3
227
Tumor
-0.3
186
Normal
-0.4
817
Tumor
-0.4
481
Tumor
-0.4
685
Tumor
-0.4
431
Tumor
-0.4
363
Tumor
-0.4
191
Tumor
-0.4
641
Tumor
-0.4
1025
Tumor
-0.4
435
Tumor
-0.4
161
Tumor
-0.4
447
Tumor
-0.4
343
Tumor
-0.4
313
Tumor
-0.4
814
Normal
-0.4
141
Tumor
-0.5
465
Tumor
-0.5
387
Tumor
-0.5
745
Tumor
-0.5
865
Tumor
-0.5
384
Normal
-0.5
277
Tumor
-0.5
917
Tumor
-0.5
951
Tumor
-0.5
211
Tumor
-0.5
271
Tumor
-0.5
912
Normal
-0.5
937
Tumor
-0.5
471
Tumor
-0.5
563
Tumor
-0.5
411
Tumor
-0.5
724
Normal
-0.5
877
Tumor
-0.6
573
Tumor
-0.6
285
Tumor
-0.6
635
Tumor
-0.6
433
Tumor
-0.6
672
Normal
-0.6
884
Normal
-0.6
443
Tumor
-0.6
663
Tumor
-0.6
311
Tumor
-0.6
213
Tumor
-0.6
545
Tumor
-0.6
391
Tumor
-0.6
353
Tumor
-0.6
185
Tumor
-0.6
361
Tumor
-0.6
1027
Tumor
-0.6
375
Tumor
-0.6
123
Tumor
-0.7
421
Tumor
-0.7
427
Tumor
-0.7
187
Tumor
-0.7
1013
Tumor
-0.7
461
Tumor
-0.7
463
Tumor
-0.7
883
Tumor
-0.7
785
Tumor
-0.7
1045
Tumor
-0.7
813
Tumor
-0.7
257
Tumor
-0.7
297
Tumor
-0.7
137
Tumor
-0.7
815
Tumor
-0.7
863
Tumor
-0.7
385
Tumor
-0.8
383
Tumor
-0.8
983
Tumor
-0.8
455
Tumor
-0.8
851
Tumor
-0.8
517
Tumor
-0.8
467
Tumor
-0.9
661
Tumor
-0.9
967
Tumor
-0.9
921
Tumor
-0.9
953
Tumor
-0.9
331
Tumor
-0.9
283
Tumor
-0.9
147
Tumor
-0.9
727
Tumor
-1.0
535
Tumor
-1.0
537
Tumor
-1.1
925
Tumor
-1.2
737
Tumor
-1.2
777
Tumor
-1.2
425
Tumor
-1.2
515
Tumor
-1.2
365
Tumor
-1.3
665
Tumor
-1.3
671
Tumor
-1.5
125
Tumor
-1.5
513
Tumor
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.