We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STAT3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
32.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
114.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
107.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
102.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
94.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
92.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
88.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
87.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
87.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
78.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
76.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
76.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
74.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
72.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
72.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
70.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
70.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
70.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
70.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
69.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
66.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
64.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
64.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
64.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
62.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
61.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
61.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
60.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
60.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
59.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
58.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
58.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
58.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
57.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
57.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
57.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
57.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
56.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
56.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
55.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
52.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
52.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
52.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
52.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
52.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
51.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
51.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
51.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
51.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
51.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
51.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
51.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
50.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
50.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
49.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
49.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
49.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
49.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
49.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
48.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
48.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
48.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
48.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
47.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
47.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
45.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
45.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
45.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
45.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
44.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
44.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
44.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
44.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
44.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
44.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
44.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
44.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
44.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
42.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
42.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
42.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
42.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
42.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
42.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
42.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
42.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
42.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
41.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
41.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
41.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
41.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
41.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
41.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
41.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
41.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
41.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
41.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
41.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
41.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
40.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
40.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
40.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
40.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
40.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
39.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
39.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
39.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
39.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
39.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
39.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
39.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
39.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
39.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
39.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
38.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
38.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
38.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
38.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
38.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
38.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
38.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
38.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
37.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
37.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
37.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
37.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
37.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
37.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
37.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
37.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
36.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
36.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
36.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
36.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
36.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
35.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
35.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
35.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
35.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
35.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
34.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
34.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
33.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
33.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
33.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
33.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
33.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
33.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
32.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
32.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
32.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
32.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
32.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
32.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
32.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
32.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
31.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
31.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
31.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
31.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
31.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
31.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
31.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
31.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
31.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
31.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
31.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
30.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
30.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
30.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
30.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
30.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
30.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
30.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
30.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
30.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
30.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
30.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
30.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
30.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
29.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
29.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
29.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
29.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
29.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
28.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
28.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
28.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
28.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
28.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
28.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
28.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
27.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
27.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
27.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
27.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
27.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
27.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
27.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
27.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
27.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
27.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
26.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
26.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
26.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
26.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
26.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
25.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
25.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
25.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
25.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
25.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
25.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
25.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
25.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
25.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
24.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
24.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
24.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
24.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
24.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
24.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
24.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
24.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
23.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
23.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
23.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
23.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
23.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
23.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
23.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
23.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
23.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
23.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
23.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
23.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
22.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
22.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
22.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
22.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
22.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
22.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
22.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
22.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
22.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
22.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
21.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
21.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
21.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
21.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
21.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
21.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
20.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
20.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
20.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
20.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
20.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
20.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
20.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
20.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
20.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
20.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
20.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
19.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
19.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
19.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
19.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
19.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
18.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
18.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
18.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
18.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
18.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
18.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
18.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
18.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
18.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
17.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
17.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
17.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
17.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
17.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
17.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
17.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
17.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
16.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
16.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
16.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
16.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
15.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
15.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
15.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
15.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
14.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
13.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
13.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
12.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
12.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
11.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STAT3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
36.9
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
162.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
105.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
97.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
94.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
92.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
88.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
82.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
79.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
77.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
77.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
75.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
73.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
71.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
69.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
67.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
67.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
67.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
67.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
66.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
61.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
60.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
60.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
60.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
59.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
58.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
58.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
58.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
58.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
57.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
57.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
57.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
57.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
56.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
55.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
55.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
54.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
54.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
54.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
53.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
53.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
53.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
52.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
51.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
50.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
50.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
49.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
49.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
49.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
48.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
47.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
47.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
46.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
46.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
46.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
45.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
45.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
45.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
44.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
44.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
44.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
44.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
43.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
43.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
43.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
43.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
43.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
43.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
42.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
42.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
42.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
42.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
41.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
41.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
40.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
40.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
40.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
40.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
39.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
39.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
39.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
39.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
39.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
39.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
39.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
38.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
38.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
38.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
38.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
37.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
37.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
37.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
37.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
37.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
36.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
36.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
36.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
35.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
35.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
35.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
35.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
35.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
34.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
34.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
34.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
34.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
33.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
33.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
33.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
33.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
33.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
33.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
33.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
32.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
32.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
32.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
32.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
32.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
31.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
31.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
31.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
31.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
31.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
31.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
31.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
31.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
31.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
30.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
30.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
30.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
30.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
30.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
30.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
30.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
30.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
30.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
29.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
29.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
29.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
29.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
29.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
28.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
28.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
28.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
28.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
28.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
28.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
28.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
28.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
28.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
27.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
27.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
27.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
27.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
27.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
27.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
27.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
27.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
26.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
26.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
26.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
26.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
26.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
25.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
25.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
25.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
25.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
25.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
24.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
24.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
24.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
24.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
23.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
23.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
23.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
23.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
23.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
23.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
23.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
23.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
23.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
22.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
22.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
22.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
22.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
22.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
22.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
22.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
22.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
22.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
21.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
21.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
21.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
21.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
20.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
20.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
20.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
18.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
18.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
18.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
18.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
17.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
16.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
15.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
981
Tumor
1.2
353
Tumor
1.1
327
Tumor
1.0
937
Tumor
1.0
573
Tumor
0.9
497
Tumor
0.9
957
Tumor
0.9
257
Tumor
0.8
861
Tumor
0.6
218
Normal
0.6
286
Normal
0.6
817
Tumor
0.5
147
Tumor
0.5
1015
Tumor
0.5
125
Tumor
0.5
467
Tumor
0.5
113
Tumor
0.4
1026
Normal
0.4
1021
Tumor
0.4
392
Normal
0.4
558
Normal
0.4
571
Tumor
0.4
723
Tumor
0.4
671
Tumor
0.4
523
Tumor
0.4
696
Normal
0.3
953
Tumor
0.3
232
Normal
0.3
778
Normal
0.3
724
Normal
0.3
557
Tumor
0.3
528
Normal
0.3
1044
Normal
0.3
867
Tumor
0.3
228
Normal
0.3
142
Normal
0.3
728
Normal
0.3
145
Tumor
0.3
343
Tumor
0.3
642
Normal
0.3
262
Normal
0.3
195
Tumor
0.3
745
Tumor
0.3
187
Tumor
0.3
422
Normal
0.3
213
Tumor
0.3
277
Tumor
0.3
425
Tumor
0.3
217
Tumor
0.3
463
Tumor
0.3
451
Tumor
0.3
713
Tumor
0.3
124
Normal
0.2
721
Tumor
0.2
421
Tumor
0.2
685
Tumor
0.2
967
Tumor
0.2
344
Normal
0.2
332
Normal
0.2
368
Normal
0.2
816
Normal
0.2
952
Normal
0.2
568
Normal
0.2
526
Normal
0.2
452
Normal
0.2
111
Normal
0.2
386
Normal
0.2
1028
Normal
0.2
865
Tumor
0.2
396
Normal
0.2
746
Normal
0.2
112
Tumor
0.2
414
Normal
0.2
666
Normal
0.2
943
Tumor
0.2
514
Normal
0.2
695
Tumor
0.2
352
Normal
0.2
741
Tumor
0.2
617
Tumor
0.2
533
Tumor
0.2
426
Normal
0.2
1016
Normal
0.2
358
Normal
0.2
862
Normal
0.2
574
Normal
0.2
722
Normal
0.2
968
Normal
0.2
375
Tumor
0.2
866
Normal
0.2
524
Normal
0.2
448
Normal
0.2
126
Normal
0.2
636
Normal
0.2
1022
Normal
0.1
564
Normal
0.1
114
Normal
0.1
662
Normal
0.1
536
Normal
0.1
191
Tumor
0.1
136
Normal
0.1
446
Normal
0.1
852
Normal
0.1
661
Tumor
0.1
518
Normal
0.1
635
Tumor
0.1
956
Normal
0.1
138
Normal
0.1
132
Normal
0.1
212
Normal
0.1
738
Normal
0.1
474
Normal
0.1
468
Normal
0.1
926
Normal
0.1
756
Normal
0.1
311
Tumor
0.1
864
Normal
0.1
456
Normal
0.1
672
Normal
0.1
436
Normal
0.1
141
Tumor
0.1
376
Normal
0.1
223
Tumor
0.1
434
Normal
0.1
285
Tumor
0.1
432
Normal
0.1
284
Normal
0.1
214
Normal
0.1
912
Normal
0.1
224
Normal
0.1
148
Normal
0.1
616
Normal
0.1
188
Normal
0.1
488
Normal
0.1
424
Normal
0.1
686
Normal
0.1
966
Normal
0.1
1046
Normal
0.1
665
Tumor
0.1
268
Normal
0.1
572
Normal
0.1
258
Normal
0.1
384
Normal
0.1
944
Normal
0.1
978
Normal
0.1
1027
Tumor
0.1
857
Tumor
0.1
267
Tumor
0.1
914
Normal
0.1
525
Tumor
0.0
494
Normal
0.0
443
Tumor
0.0
498
Normal
0.0
272
Normal
0.0
394
Normal
0.0
433
Tumor
0.0
222
Normal
0.0
924
Normal
0.0
628
Normal
0.0
161
Tumor
0.0
492
Normal
0.0
487
Tumor
0.0
858
Normal
0.0
444
Normal
0.0
186
Normal
0.0
554
Normal
0.0
135
Tumor
0.0
727
Tumor
0.0
393
Tumor
0.0
312
Normal
0.0
466
Normal
0.0
462
Normal
0.0
868
Normal
0.0
648
Normal
0.0
716
Normal
0.0
567
Tumor
0.0
1014
Normal
0.0
714
Normal
0.0
146
Normal
0.0
786
Normal
0.0
395
Tumor
0.0
664
Normal
0.0
423
Tumor
0.0
314
Normal
0.0
976
Normal
0.0
742
Normal
0.0
527
Tumor
0.0
982
Normal
0.0
192
Normal
0.0
975
Tumor
0.0
955
Tumor
0.0
354
Normal
0.0
744
Normal
0.0
884
Normal
0.0
162
Normal
0.0
1043
Tumor
0.0
814
Normal
0.0
447
Tumor
0.0
918
Normal
0.0
298
Normal
0.0
954
Normal
-0.1
818
Normal
-0.1
984
Normal
-0.1
231
Tumor
-0.1
1025
Tumor
-0.1
172
Normal
-0.1
196
Normal
-0.1
874
Normal
-0.1
916
Normal
-0.1
663
Tumor
-0.1
221
Tumor
-0.1
464
Normal
-0.1
563
Tumor
-0.1
278
Normal
-0.1
824
Normal
-0.1
938
Normal
-0.1
851
Tumor
-0.1
618
Normal
-0.1
185
Tumor
-0.1
283
Tumor
-0.1
545
Tumor
-0.1
964
Normal
-0.1
261
Tumor
-0.1
313
Tumor
-0.1
515
Tumor
-0.1
882
Normal
-0.1
427
Tumor
-0.1
538
Normal
-0.1
755
Tumor
-0.1
128
Normal
-0.1
461
Tumor
-0.1
478
Normal
-0.1
977
Tumor
-0.1
477
Tumor
-0.1
388
Normal
-0.1
482
Normal
-0.1
356
Normal
-0.1
823
Tumor
-0.1
917
Tumor
-0.1
813
Tumor
-0.2
546
Normal
-0.2
698
Normal
-0.2
428
Normal
-0.2
416
Normal
-0.2
357
Tumor
-0.2
491
Tumor
-0.2
362
Normal
-0.2
777
Tumor
-0.2
364
Normal
-0.2
342
Normal
-0.2
412
Normal
-0.2
341
Tumor
-0.2
391
Tumor
-0.2
873
Tumor
-0.2
366
Normal
-0.2
455
Tumor
-0.2
297
Tumor
-0.2
472
Normal
-0.2
878
Normal
-0.2
697
Tumor
-0.2
537
Tumor
-0.2
481
Tumor
-0.2
641
Tumor
-0.2
123
Tumor
-0.2
883
Tumor
-0.2
1042
Normal
-0.2
863
Tumor
-0.2
913
Tumor
-0.2
922
Normal
-0.2
493
Tumor
-0.3
1045
Tumor
-0.3
923
Tumor
-0.3
958
Normal
-0.3
415
Tumor
-0.3
881
Tumor
-0.3
365
Tumor
-0.3
534
Normal
-0.3
516
Normal
-0.3
328
Normal
-0.3
915
Tumor
-0.3
127
Tumor
-0.3
484
Normal
-0.3
517
Tumor
-0.3
1032
Normal
-0.3
963
Tumor
-0.3
647
Tumor
-0.3
171
Tumor
-0.3
383
Tumor
-0.4
877
Tumor
-0.4
411
Tumor
-0.4
965
Tumor
-0.4
951
Tumor
-0.4
471
Tumor
-0.4
137
Tumor
-0.4
271
Tumor
-0.4
615
Tumor
-0.4
385
Tumor
-0.4
513
Tumor
-0.4
211
Tumor
-0.4
355
Tumor
-0.4
627
Tumor
-0.5
535
Tumor
-0.5
715
Tumor
-0.5
361
Tumor
-0.5
431
Tumor
-0.5
413
Tumor
-0.5
983
Tumor
-0.5
815
Tumor
-0.5
483
Tumor
-0.5
1013
Tumor
-0.5
925
Tumor
-0.6
1031
Tumor
-0.6
553
Tumor
-0.6
445
Tumor
-0.6
465
Tumor
-0.6
785
Tumor
-0.6
367
Tumor
-0.6
351
Tumor
-0.6
387
Tumor
-0.6
911
Tumor
-0.7
435
Tumor
-0.7
1041
Tumor
-0.7
921
Tumor
-0.7
737
Tumor
-0.7
227
Tumor
-0.8
331
Tumor
-0.8
131
Tumor
-0.9
363
Tumor
-0.9
473
Tumor
-1.1
743
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
