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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMUB2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
74.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
62.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
57.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
53.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
47.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
46.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
46.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
46.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
44.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
43.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
39.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
37.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
37.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
37.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
36.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
36.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
36.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
35.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
35.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
34.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
34.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
34.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
34.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
34.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
34.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
33.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
33.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
33.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
33.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
32.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
32.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
32.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
31.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
31.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
31.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
31.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
31.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
30.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
30.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
30.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
30.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
30.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
29.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
29.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
29.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
28.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
28.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
28.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
28.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
28.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
28.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
28.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
28.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
27.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
27.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
27.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
27.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
27.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
27.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
27.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
27.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
27.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
26.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
26.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
26.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
26.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
26.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
26.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
26.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
26.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
26.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
26.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
26.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
26.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
25.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
25.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
25.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
25.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
25.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
25.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
25.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
25.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
25.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
25.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
25.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
25.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
25.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
24.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
24.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
24.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
24.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
24.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
24.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
24.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
24.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
24.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
24.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
24.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
24.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
23.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
23.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
23.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
23.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
23.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
22.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
22.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
22.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
22.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
22.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
22.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
22.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
22.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
22.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
22.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
21.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
21.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
21.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
21.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
21.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
21.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
20.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
20.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
20.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
20.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
20.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
20.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
20.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
20.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
20.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
20.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
20.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
20.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
19.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
19.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
19.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
19.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
19.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
19.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
19.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
19.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
19.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
19.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
19.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
19.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
19.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
18.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
18.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
18.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
18.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
18.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
18.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
18.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
18.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
18.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
17.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
17.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
17.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
17.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
17.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
17.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
16.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
16.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
16.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
16.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
15.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
15.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
15.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
15.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
15.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
15.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
14.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
13.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
13.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
13.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
13.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
13.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMUB2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.7
Number of samples
231
Samples
Sample
Description
TPM
DO23526
0 years, male, NA, stage:3, alive, 1050 days
47.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
44.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
43.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
40.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
39.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
35.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
35.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
35.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
33.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
33.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
33.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
32.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
32.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
32.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
32.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
32.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
31.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
30.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
30.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
29.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
29.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
29.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
28.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
28.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
28.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
27.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
27.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
27.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
26.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
26.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
26.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
26.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
26.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
26.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
26.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
25.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
25.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
25.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
25.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
24.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
24.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
24.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
24.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
24.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
23.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
23.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
23.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
23.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
23.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
22.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
22.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
22.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
22.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
22.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
21.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
21.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
21.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
21.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
21.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
21.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
21.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
20.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
20.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
20.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
20.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
20.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
20.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
20.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
19.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
19.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
19.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
19.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
19.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
19.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
18.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
18.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
18.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
18.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
17.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
17.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
17.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
17.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
17.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
16.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
13.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
741
Tumor
1.9
685
Tumor
1.8
957
Tumor
1.8
1027
Tumor
1.6
1013
Tumor
1.6
571
Tumor
1.3
257
Tumor
1.2
435
Tumor
1.2
567
Tumor
1.0
981
Tumor
1.0
953
Tumor
1.0
465
Tumor
1.0
977
Tumor
0.9
171
Tumor
0.9
123
Tumor
0.9
497
Tumor
0.8
727
Tumor
0.8
355
Tumor
0.8
923
Tumor
0.8
537
Tumor
0.8
357
Tumor
0.8
313
Tumor
0.8
915
Tumor
0.8
411
Tumor
0.7
351
Tumor
0.7
125
Tumor
0.7
525
Tumor
0.7
695
Tumor
0.7
341
Tumor
0.7
724
Normal
0.6
533
Tumor
0.6
375
Tumor
0.6
227
Tumor
0.6
261
Tumor
0.6
665
Tumor
0.6
663
Tumor
0.6
493
Tumor
0.5
513
Tumor
0.5
311
Tumor
0.5
477
Tumor
0.5
965
Tumor
0.5
925
Tumor
0.4
425
Tumor
0.4
1021
Tumor
0.4
481
Tumor
0.4
127
Tumor
0.4
951
Tumor
0.4
755
Tumor
0.4
813
Tumor
0.4
647
Tumor
0.3
635
Tumor
0.3
213
Tumor
0.3
431
Tumor
0.3
573
Tumor
0.3
112
Tumor
0.3
231
Tumor
0.3
383
Tumor
0.3
445
Tumor
0.3
572
Normal
0.2
955
Tumor
0.2
423
Tumor
0.2
865
Tumor
0.2
1015
Tumor
0.2
283
Tumor
0.2
343
Tumor
0.2
983
Tumor
0.2
483
Tumor
0.2
861
Tumor
0.2
186
Normal
0.2
491
Tumor
0.2
922
Normal
0.1
514
Normal
0.1
187
Tumor
0.1
963
Tumor
0.1
535
Tumor
0.1
978
Normal
0.1
1032
Normal
0.1
563
Tumor
0.1
421
Tumor
0.1
147
Tumor
0.1
1028
Normal
0.1
527
Tumor
0.1
455
Tumor
0.1
918
Normal
0.1
851
Tumor
0.1
553
Tumor
0.1
391
Tumor
0.1
723
Tumor
0.1
393
Tumor
0.1
545
Tumor
0.1
967
Tumor
0.1
777
Tumor
0.0
412
Normal
0.0
814
Normal
0.0
185
Tumor
0.0
984
Normal
0.0
745
Tumor
0.0
958
Normal
0.0
356
Normal
0.0
568
Normal
0.0
742
Normal
0.0
395
Tumor
0.0
938
Normal
0.0
137
Tumor
0.0
554
Normal
0.0
785
Tumor
0.0
616
Normal
0.0
267
Tumor
0.0
1014
Normal
0.0
916
Normal
0.0
1041
Tumor
0.0
353
Tumor
-0.1
558
Normal
-0.1
943
Tumor
-0.1
114
Normal
-0.1
1026
Normal
-0.1
145
Tumor
-0.1
223
Tumor
-0.1
615
Tumor
-0.1
482
Normal
-0.1
494
Normal
-0.1
926
Normal
-0.1
367
Tumor
-0.1
976
Normal
-0.1
416
Normal
-0.1
924
Normal
-0.1
944
Normal
-0.1
968
Normal
-0.1
364
Normal
-0.1
671
Tumor
-0.1
937
Tumor
-0.1
883
Tumor
-0.1
262
Normal
-0.1
368
Normal
-0.1
636
Normal
-0.1
228
Normal
-0.1
111
Normal
-0.1
354
Normal
-0.1
526
Normal
-0.1
124
Normal
-0.1
518
Normal
-0.1
443
Tumor
-0.1
217
Tumor
-0.1
415
Tumor
-0.1
376
Normal
-0.1
128
Normal
-0.1
661
Tumor
-0.1
161
Tumor
-0.2
484
Normal
-0.2
534
Normal
-0.2
366
Normal
-0.2
1022
Normal
-0.2
358
Normal
-0.2
1042
Normal
-0.2
328
Normal
-0.2
628
Normal
-0.2
162
Normal
-0.2
385
Tumor
-0.2
954
Normal
-0.2
728
Normal
-0.2
966
Normal
-0.2
864
Normal
-0.2
867
Tumor
-0.2
564
Normal
-0.2
964
Normal
-0.2
342
Normal
-0.2
224
Normal
-0.2
352
Normal
-0.2
474
Normal
-0.2
132
Normal
-0.2
472
Normal
-0.2
427
Tumor
-0.2
515
Tumor
-0.2
546
Normal
-0.2
662
Normal
-0.2
426
Normal
-0.2
648
Normal
-0.2
462
Normal
-0.2
142
Normal
-0.2
538
Normal
-0.2
446
Normal
-0.2
686
Normal
-0.2
258
Normal
-0.2
232
Normal
-0.2
272
Normal
-0.2
528
Normal
-0.2
716
Normal
-0.2
488
Normal
-0.2
433
Tumor
-0.2
956
Normal
-0.2
388
Normal
-0.2
451
Tumor
-0.2
714
Normal
-0.2
878
Normal
-0.2
113
Tumor
-0.2
327
Tumor
-0.2
517
Tumor
-0.2
1016
Normal
-0.2
786
Normal
-0.2
857
Tumor
-0.2
467
Tumor
-0.3
664
Normal
-0.3
456
Normal
-0.3
738
Normal
-0.3
516
Normal
-0.3
422
Normal
-0.3
917
Tumor
-0.3
278
Normal
-0.3
914
Normal
-0.3
136
Normal
-0.3
314
Normal
-0.3
312
Normal
-0.3
468
Normal
-0.3
172
Normal
-0.3
715
Tumor
-0.3
286
Normal
-0.3
524
Normal
-0.3
952
Normal
-0.3
618
Normal
-0.3
744
Normal
-0.3
464
Normal
-0.3
746
Normal
-0.3
344
Normal
-0.3
466
Normal
-0.3
913
Tumor
-0.3
212
Normal
-0.3
148
Normal
-0.3
862
Normal
-0.3
756
Normal
-0.3
362
Normal
-0.3
452
Normal
-0.3
866
Normal
-0.3
126
Normal
-0.3
384
Normal
-0.3
394
Normal
-0.3
284
Normal
-0.4
188
Normal
-0.4
982
Normal
-0.4
298
Normal
-0.4
141
Tumor
-0.4
473
Tumor
-0.4
414
Normal
-0.4
434
Normal
-0.4
815
Tumor
-0.4
461
Tumor
-0.4
297
Tumor
-0.4
713
Tumor
-0.4
722
Normal
-0.4
444
Normal
-0.4
487
Tumor
-0.4
698
Normal
-0.4
211
Tumor
-0.4
138
Normal
-0.4
361
Tumor
-0.4
432
Normal
-0.4
146
Normal
-0.4
536
Normal
-0.4
1046
Normal
-0.4
396
Normal
-0.4
424
Normal
-0.4
877
Tumor
-0.4
868
Normal
-0.4
1044
Normal
-0.4
557
Tumor
-0.4
696
Normal
-0.4
1043
Tumor
-0.4
1031
Tumor
-0.5
873
Tumor
-0.5
277
Tumor
-0.5
478
Normal
-0.5
463
Tumor
-0.5
823
Tumor
-0.5
363
Tumor
-0.5
498
Normal
-0.5
436
Normal
-0.5
492
Normal
-0.5
574
Normal
-0.5
912
Normal
-0.5
214
Normal
-0.5
642
Normal
-0.5
858
Normal
-0.5
428
Normal
-0.5
778
Normal
-0.5
135
Tumor
-0.5
268
Normal
-0.5
332
Normal
-0.5
882
Normal
-0.5
196
Normal
-0.5
1025
Tumor
-0.5
816
Normal
-0.5
413
Tumor
-0.5
392
Normal
-0.5
523
Tumor
-0.5
191
Tumor
-0.5
672
Normal
-0.5
271
Tumor
-0.6
697
Tumor
-0.6
222
Normal
-0.6
975
Tumor
-0.6
874
Normal
-0.6
737
Tumor
-0.6
386
Normal
-0.6
365
Tumor
-0.6
824
Normal
-0.6
387
Tumor
-0.6
641
Tumor
-0.6
921
Tumor
-0.6
863
Tumor
-0.7
218
Normal
-0.7
448
Normal
-0.7
666
Normal
-0.7
627
Tumor
-0.7
884
Normal
-0.7
447
Tumor
-0.7
911
Tumor
-0.7
1045
Tumor
-0.7
852
Normal
-0.7
131
Tumor
-0.8
818
Normal
-0.8
817
Tumor
-0.8
721
Tumor
-0.8
471
Tumor
-0.8
195
Tumor
-0.8
331
Tumor
-0.9
192
Normal
-1.0
617
Tumor
-1.2
881
Tumor
-1.3
221
Tumor
-1.3
285
Tumor
-1.5
743
Tumor
-1.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
