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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC20A2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
99.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
78.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
74.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
73.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
63.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
54.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
51.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
49.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
47.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
42.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
42.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
42.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
41.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
40.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
40.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
40.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
38.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
38.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
37.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
37.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
36.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
35.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
33.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
33.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
33.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
33.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
31.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
31.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
30.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
30.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
29.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
28.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
28.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
27.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
27.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
27.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
27.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
27.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
27.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
27.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
26.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
26.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
25.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
25.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
25.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
25.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
25.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
25.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
24.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
24.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
24.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
24.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
24.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
24.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
23.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
23.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
23.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
23.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
22.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
22.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
22.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
22.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
22.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
22.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
21.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
21.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
21.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
21.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
21.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
21.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
21.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
20.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
20.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
20.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
20.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
20.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
19.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
18.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
18.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
18.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
17.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
17.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
17.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
17.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
17.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
17.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
16.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
16.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
16.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
16.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
16.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
16.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
15.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
15.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
14.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
14.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
13.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
12.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
12.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
11.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
11.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
10.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
6.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
4.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
3.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC20A2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.6
Number of samples
231
Samples
Sample
Description
TPM
DO50811
0 years, male, NA, stage:1, alive, 450 days
88.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
84.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
75.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
62.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
53.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
46.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
44.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
40.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
38.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
37.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
36.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
36.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
34.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
32.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
31.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
31.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
28.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
27.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
26.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
24.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
23.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
23.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
23.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
22.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
22.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
22.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
21.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
21.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
21.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
21.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
20.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
19.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
19.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
19.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
17.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
15.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
14.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
6.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
4.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
4.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
4.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
4.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
641
Tumor
2.3
231
Tumor
1.8
533
Tumor
1.3
685
Tumor
1.2
471
Tumor
1.1
435
Tumor
1.1
715
Tumor
1.1
741
Tumor
0.9
883
Tumor
0.9
981
Tumor
0.9
697
Tumor
0.8
221
Tumor
0.8
915
Tumor
0.7
423
Tumor
0.7
861
Tumor
0.7
385
Tumor
0.7
921
Tumor
0.7
426
Normal
0.7
615
Tumor
0.7
513
Tumor
0.7
1025
Tumor
0.6
534
Normal
0.6
944
Normal
0.6
745
Tumor
0.6
1045
Tumor
0.6
743
Tumor
0.6
553
Tumor
0.6
635
Tumor
0.5
975
Tumor
0.5
912
Normal
0.5
448
Normal
0.5
1027
Tumor
0.5
868
Normal
0.5
428
Normal
0.5
977
Tumor
0.5
866
Normal
0.5
331
Tumor
0.5
535
Tumor
0.5
278
Normal
0.5
958
Normal
0.5
864
Normal
0.5
414
Normal
0.4
911
Tumor
0.4
473
Tumor
0.4
554
Normal
0.4
422
Normal
0.4
648
Normal
0.4
361
Tumor
0.4
813
Tumor
0.4
525
Tumor
0.4
477
Tumor
0.4
955
Tumor
0.4
427
Tumor
0.4
546
Normal
0.4
727
Tumor
0.4
882
Normal
0.4
528
Normal
0.4
424
Normal
0.4
982
Normal
0.3
413
Tumor
0.3
786
Normal
0.3
817
Tumor
0.3
132
Normal
0.3
462
Normal
0.3
723
Tumor
0.3
938
Normal
0.3
964
Normal
0.3
951
Tumor
0.3
298
Normal
0.3
466
Normal
0.3
271
Tumor
0.3
258
Normal
0.3
482
Normal
0.3
914
Normal
0.3
514
Normal
0.3
365
Tumor
0.3
816
Normal
0.3
356
Normal
0.3
123
Tumor
0.3
472
Normal
0.3
616
Normal
0.3
874
Normal
0.3
572
Normal
0.3
425
Tumor
0.3
1046
Normal
0.3
742
Normal
0.3
527
Tumor
0.3
862
Normal
0.3
968
Normal
0.3
728
Normal
0.2
494
Normal
0.2
436
Normal
0.2
698
Normal
0.2
484
Normal
0.2
128
Normal
0.2
328
Normal
0.2
363
Tumor
0.2
976
Normal
0.2
1032
Normal
0.2
978
Normal
0.2
1014
Normal
0.2
518
Normal
0.2
746
Normal
0.2
474
Normal
0.2
952
Normal
0.2
714
Normal
0.2
956
Normal
0.2
755
Tumor
0.2
412
Normal
0.2
162
Normal
0.2
863
Tumor
0.2
232
Normal
0.2
526
Normal
0.2
713
Tumor
0.2
314
Normal
0.2
1042
Normal
0.2
558
Normal
0.2
564
Normal
0.2
468
Normal
0.2
627
Tumor
0.2
1031
Tumor
0.1
416
Normal
0.1
686
Normal
0.1
464
Normal
0.1
452
Normal
0.1
1043
Tumor
0.1
393
Tumor
0.1
867
Tumor
0.1
922
Normal
0.1
447
Tumor
0.1
878
Normal
0.1
516
Normal
0.1
388
Normal
0.1
724
Normal
0.1
918
Normal
0.1
824
Normal
0.1
884
Normal
0.1
628
Normal
0.1
873
Tumor
0.1
284
Normal
0.1
1016
Normal
0.1
722
Normal
0.1
148
Normal
0.1
212
Normal
0.1
387
Tumor
0.1
161
Tumor
0.1
636
Normal
0.1
394
Normal
0.1
376
Normal
0.1
286
Normal
0.1
443
Tumor
0.1
642
Normal
0.1
568
Normal
0.1
881
Tumor
0.1
738
Normal
0.1
1022
Normal
0.1
138
Normal
0.1
228
Normal
0.1
172
Normal
0.1
111
Normal
0.1
136
Normal
0.0
926
Normal
0.0
571
Tumor
0.0
396
Normal
0.0
1028
Normal
0.0
114
Normal
0.0
364
Normal
0.0
924
Normal
0.0
557
Tumor
0.0
366
Normal
0.0
362
Normal
0.0
954
Normal
0.0
358
Normal
0.0
497
Tumor
0.0
618
Normal
0.0
463
Tumor
0.0
446
Normal
0.0
312
Normal
0.0
756
Normal
0.0
456
Normal
0.0
777
Tumor
0.0
984
Normal
0.0
272
Normal
0.0
488
Normal
0.0
191
Tumor
0.0
327
Tumor
0.0
147
Tumor
0.0
432
Normal
0.0
664
Normal
0.0
332
Normal
0.0
127
Tumor
0.0
451
Tumor
0.0
113
Tumor
0.0
785
Tumor
0.0
666
Normal
0.0
261
Tumor
0.0
1026
Normal
-0.1
916
Normal
-0.1
342
Normal
-0.1
481
Tumor
-0.1
814
Normal
-0.1
778
Normal
-0.1
415
Tumor
-0.1
966
Normal
-0.1
262
Normal
-0.1
135
Tumor
-0.1
186
Normal
-0.1
145
Tumor
-0.1
465
Tumor
-0.1
858
Normal
-0.1
112
Tumor
-0.1
818
Normal
-0.1
222
Normal
-0.1
538
Normal
-0.1
492
Normal
-0.1
196
Normal
-0.1
392
Normal
-0.1
421
Tumor
-0.1
574
Normal
-0.1
461
Tumor
-0.1
354
Normal
-0.1
142
Normal
-0.1
617
Tumor
-0.1
517
Tumor
-0.1
716
Normal
-0.1
925
Tumor
-0.1
696
Normal
-0.2
865
Tumor
-0.2
257
Tumor
-0.2
137
Tumor
-0.2
665
Tumor
-0.2
1015
Tumor
-0.2
823
Tumor
-0.2
268
Normal
-0.2
877
Tumor
-0.2
737
Tumor
-0.2
277
Tumor
-0.2
913
Tumor
-0.2
662
Normal
-0.2
141
Tumor
-0.2
536
Normal
-0.2
1044
Normal
-0.2
227
Tumor
-0.2
671
Tumor
-0.2
851
Tumor
-0.2
211
Tumor
-0.2
478
Normal
-0.2
493
Tumor
-0.2
214
Normal
-0.2
352
Normal
-0.2
124
Normal
-0.2
852
Normal
-0.3
188
Normal
-0.3
131
Tumor
-0.3
695
Tumor
-0.3
524
Normal
-0.3
963
Tumor
-0.3
498
Normal
-0.3
455
Tumor
-0.3
344
Normal
-0.3
126
Normal
-0.3
386
Normal
-0.3
744
Normal
-0.3
146
Normal
-0.3
355
Tumor
-0.3
391
Tumor
-0.3
224
Normal
-0.3
515
Tumor
-0.3
943
Tumor
-0.3
395
Tumor
-0.3
537
Tumor
-0.3
444
Normal
-0.4
218
Normal
-0.4
983
Tumor
-0.4
1041
Tumor
-0.4
223
Tumor
-0.4
411
Tumor
-0.4
434
Normal
-0.4
368
Normal
-0.4
487
Tumor
-0.4
937
Tumor
-0.4
375
Tumor
-0.4
341
Tumor
-0.4
672
Normal
-0.4
297
Tumor
-0.4
195
Tumor
-0.4
433
Tumor
-0.4
187
Tumor
-0.5
563
Tumor
-0.5
523
Tumor
-0.5
217
Tumor
-0.5
431
Tumor
-0.5
567
Tumor
-0.5
367
Tumor
-0.5
267
Tumor
-0.5
313
Tumor
-0.5
192
Normal
-0.5
384
Normal
-0.6
213
Tumor
-0.6
917
Tumor
-0.6
383
Tumor
-0.6
171
Tumor
-0.7
353
Tumor
-0.7
663
Tumor
-0.7
491
Tumor
-0.7
721
Tumor
-0.7
857
Tumor
-0.7
815
Tumor
-0.7
923
Tumor
-0.8
573
Tumor
-0.8
1021
Tumor
-0.8
1013
Tumor
-0.8
647
Tumor
-0.8
483
Tumor
-0.8
311
Tumor
-0.8
343
Tumor
-0.8
545
Tumor
-0.8
965
Tumor
-0.8
185
Tumor
-0.9
357
Tumor
-0.9
467
Tumor
-0.9
957
Tumor
-1.0
445
Tumor
-1.0
953
Tumor
-1.0
351
Tumor
-1.0
967
Tumor
-1.1
125
Tumor
-1.2
285
Tumor
-1.3
283
Tumor
-1.7
661
Tumor
-2.1
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
