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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
COL3A1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
71.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A114-01A
42 years, male, black or african american, stage:Stage II, dead, 1149 days
1720.3
TCGA-CC-A3M9-01A
45 years, male, asian, stage:Stage IIIA, dead, 300 days
1435.7
TCGA-DD-A4NB-01A
25 years, male, white, stage:Stage I, alive, 989 days
1174.4
TCGA-CC-5260-01A
61 years, female, asian, stage:Stage IIIC, dead, 87 days
855.7
TCGA-CC-A7IJ-01A
56 years, male, asian, stage:Stage II, alive, 382 days
838.8
TCGA-ED-A66X-01A
35 years, male, asian, stage:Stage IIIA, alive, 406 days
606.3
TCGA-ED-A627-01A
74 years, male, white, stage:Stage I, alive, 423 days
529.4
TCGA-DD-A4NS-01A
61 years, female, white, stage:Stage I, dead, 2456 days
529.2
TCGA-5R-AA1D-01A
17 years, female, white, stage:Stage IIIA, alive, 449 days
517.2
TCGA-CC-5261-01A
44 years, male, asian, stage:Stage II, dead, 97 days
474.3
TCGA-ED-A7PX-01A
48 years, female, asian, stage:Stage II, alive, 6 days
437.5
TCGA-2Y-A9GX-01A
68 years, male, white, stage:Stage I, alive, 2442 days
372.0
TCGA-K7-AAU7-01A
61 years, male, white, stage:Stage II, alive, 359 days
337.4
TCGA-CC-A3MA-01A
61 years, male, asian, stage:Stage IIIA, dead, 303 days
311.0
TCGA-DD-A4NA-01A
67 years, female, white, stage:Stage IIIC, alive, 1008 days
305.0
TCGA-ED-A97K-01A
54 years, male, asian, stage:Stage IIIA, alive, 6 days
301.1
TCGA-DD-AAD2-01A
66 years, male, asian, stage:Stage I, alive, 658 days
298.1
TCGA-DD-A4ND-01A
56 years, female, white, stage:Stage I, alive, 2746 days
297.2
TCGA-DD-AAD1-01A
51 years, female, asian, stage:Stage I, alive, 564 days
278.4
TCGA-ED-A82E-01A
60 years, female, asian, stage:Stage IIIA, alive, 408 days
264.3
TCGA-ZP-A9D2-01A
51 years, male, white, stage:'--, dead, 765 days
233.0
TCGA-ED-A4XI-01A
58 years, male, asian, stage:Stage II, alive, 819 days
226.8
TCGA-DD-AAVW-01A
35 years, male, asian, stage:Stage I, alive, 2317 days
223.8
TCGA-UB-AA0U-01A
60 years, male, white, stage:Stage II, alive, 327 days
218.4
TCGA-FV-A3I0-01A
76 years, female, white, stage:Stage II, alive, 848 days
217.3
TCGA-PD-A5DF-01A
58 years, female, white, stage:Stage IIIB, dead, 639 days
213.8
TCGA-DD-AAW0-01A
54 years, male, asian, stage:Stage I, alive, 2015 days
208.6
TCGA-2Y-A9H5-01A
59 years, female, white, stage:Stage I, dead, 555 days
199.5
TCGA-DD-AADW-01A
48 years, male, asian, stage:Stage I, alive, 587 days
197.5
TCGA-RC-A6M5-01A
20 years, female, white, stage:Stage IVA, alive, 15 days
195.0
TCGA-YA-A8S7-01A
68 years, male, white, stage:Stage IIIA, dead, 412 days
189.3
TCGA-BC-A112-01A
80 years, male, white, stage:'--, dead, 153 days
187.4
TCGA-BC-A10Q-01A
72 years, female, white, stage:'--, dead, 1135 days
187.3
TCGA-MR-A8JO-01A
34 years, male, white, stage:Stage I, alive, 330 days
183.7
TCGA-DD-AAD3-01A
43 years, male, asian, stage:Stage I, alive, 1295 days
179.5
TCGA-GJ-A3OU-01A
59 years, male, white, stage:Stage I, alive, 879 days
174.2
TCGA-G3-A25Y-01A
52 years, female, asian, stage:Stage I, dead, 452 days
164.2
TCGA-5C-A9VG-01A
58 years, male, white, stage:Stage II, alive, 328 days
161.4
TCGA-5R-AAAM-01A
65 years, female, white, stage:Stage II, dead, 46 days
158.6
TCGA-BC-A10X-01A
52 years, female, white, stage:Stage IIIA, dead, 770 days
153.0
TCGA-BC-A10T-01A
76 years, male, white, stage:'--, dead, 837 days
145.2
TCGA-BC-A10R-01A
66 years, female, white, stage:'--, dead, 308 days
141.9
TCGA-FV-A3R3-01A
38 years, female, white, stage:Stage I, dead, 366 days
140.5
TCGA-CC-5262-01A
67 years, male, asian, stage:Stage IIIC, dead, 103 days
139.6
TCGA-DD-A118-01A
77 years, female, white, stage:Stage II, alive, 3437 days
138.8
TCGA-XR-A8TD-01A
49 years, female, white, stage:Stage IIIB, alive, 1030 days
133.7
TCGA-DD-A1EI-01A
46 years, male, asian, stage:Stage I, alive, 183 days
127.2
TCGA-5C-A9VH-01A
70 years, male, white, stage:Stage I, alive, 322 days
126.3
TCGA-DD-A1EH-01A
23 years, male, white, stage:Stage III, alive, 1495 days
125.4
TCGA-DD-A3A6-01A
72 years, female, white, stage:Stage II, dead, 3258 days
124.8
TCGA-DD-A4NR-01A
85 years, female, white, stage:Stage I, dead, 9 days
123.3
TCGA-ED-A5KG-01A
60 years, female, asian, stage:Stage II, alive, 854 days
118.6
TCGA-DD-AACN-01A
32 years, male, asian, stage:Stage I, alive, 1302 days
114.9
TCGA-G3-A25T-01A
45 years, female, white, stage:Stage IIIA, alive, 1553 days
114.4
TCGA-FV-A3I1-01A
81 years, female, white, stage:Stage II, dead, 247 days
112.9
TCGA-BD-A3EP-01A
75 years, female, black or african american, stage:Stage I, alive, 409 days
109.7
TCGA-G3-A5SM-01A
58 years, male, white, stage:Stage II, alive, 520 days
107.8
TCGA-CC-5263-01A
35 years, male, asian, stage:Stage IIIA, dead, 129 days
103.5
TCGA-CC-A7II-01A
54 years, male, asian, stage:Stage IIIA, alive, 399 days
102.8
TCGA-ZP-A9D1-01A
56 years, female, white, stage:'--, alive, 21 days
102.1
TCGA-BD-A3ER-01A
62 years, male, white, stage:Stage II, alive, 1115 days
98.4
TCGA-DD-A4NN-01A
56 years, female, white, stage:Stage I, dead, 899 days
97.4
TCGA-DD-AADV-01A
50 years, male, asian, stage:Stage I, alive, 574 days
97.2
TCGA-HP-A5MZ-01A
78 years, male, stage:Stage I, dead, 91 days
96.2
TCGA-DD-AACU-01A
59 years, male, asian, stage:Stage I, alive, 1567 days
94.9
TCGA-DD-A115-01A
53 years, male, white, stage:Stage IIIA, dead, 2542 days
93.2
TCGA-CC-A3MC-01A
54 years, male, asian, stage:Stage IIIA, alive, 363 days
91.0
TCGA-UB-AA0V-01A
69 years, female, white, stage:Stage I, alive, 314 days
89.8
TCGA-CC-A1HT-01A
50 years, male, asian, stage:Stage IIIA, dead, 101 days
87.9
TCGA-G3-AAV7-01A
38 years, male, asian, stage:Stage II, alive, 361 days
87.6
TCGA-DD-AAVV-01A
56 years, male, asian, stage:Stage II, alive, 2455 days
87.1
TCGA-2Y-A9H6-01A
68 years, female, white, stage:Stage I, alive, 357 days
85.9
TCGA-XR-A8TE-01A
16 years, male, white, stage:Stage IIIA, alive, 925 days
83.7
TCGA-DD-A4NE-01A
75 years, female, white, stage:Stage IIIA, dead, 660 days
81.4
TCGA-DD-A3A9-01A
64 years, female, white, stage:Stage IVB, dead, 931 days
81.1
TCGA-HP-A5N0-01A
90 years, female, stage:'--, dead, 752 days
80.3
TCGA-DD-A4NV-01A
61 years, male, white, stage:Stage IIIA, alive, 2398 days
79.8
TCGA-GJ-A9DB-01A
68 years, male, white, stage:Stage I, dead, 67 days
79.1
TCGA-G3-A7M6-01A
60 years, female, white, stage:Stage I, alive, 632 days
78.7
TCGA-DD-AACH-01A
69 years, male, asian, stage:Stage II, dead, 195 days
78.1
TCGA-BC-A110-01A
51 years, female, black or african american, stage:'--, dead, 2116 days
77.2
TCGA-ED-A7XP-01A
53 years, female, asian, stage:Stage II, alive, 400 days
77.2
TCGA-MI-A75E-01A
61 years, male, white, stage:Stage IIIC, alive, 507 days
76.9
TCGA-ZP-A9CV-01A
59 years, male, white, stage:'--, dead, 1088 days
76.3
TCGA-CC-5264-01A
71 years, male, asian, stage:Stage IIIA, dead, 102 days
75.6
TCGA-2Y-A9GS-01A
58 years, male, white, stage:'--, dead, 724 days
75.3
TCGA-UB-A7MA-01A
62 years, female, white, stage:Stage II, alive, 848 days
74.8
TCGA-DD-AAE0-01A
45 years, female, asian, stage:Stage IIIA, alive, 555 days
74.7
TCGA-2Y-A9H2-01A
64 years, female, white, stage:Stage I, alive, 1731 days
72.6
TCGA-FV-A2QR-01A
75 years, male, white, stage:Stage I, dead, 581 days
72.3
TCGA-2Y-A9GW-01A
64 years, male, white, stage:Stage I, dead, 1271 days
69.1
TCGA-DD-A11C-01A
69 years, male, white, stage:Stage I, alive, 662 days
69.0
TCGA-UB-A7ME-01A
51 years, male, asian, stage:Stage I, alive, 486 days
68.8
TCGA-ED-A7XO-01A
29 years, male, asian, stage:Stage IIIA, alive, 427 days
66.4
TCGA-XR-A8TG-01A
58 years, male, white, stage:Stage I, alive, 898 days
64.8
TCGA-DD-A1EG-01A
76 years, male, white, stage:Stage I, dead, 1372 days
64.4
TCGA-G3-A7M9-01A
70 years, male, white, stage:Stage IIIB, dead, 56 days
64.1
TCGA-DD-A4NH-01A
65 years, female, white, stage:Stage IIIB, alive, 917 days
63.0
TCGA-CC-A3MB-01A
36 years, male, asian, stage:Stage IIIA, dead, 315 days
61.9
TCGA-UB-A7MD-01A
67 years, male, black or african american, stage:Stage I, dead, 52 days
61.2
TCGA-DD-A4NO-01A
65 years, male, white, stage:Stage I, alive, 2245 days
59.3
TCGA-G3-A25V-01A
68 years, male, white, stage:Stage I, alive, 860 days
56.3
TCGA-CC-A5UC-01A
63 years, male, asian, stage:Stage IIIA, dead, 347 days
55.1
TCGA-DD-A1EF-01A
57 years, female, white, stage:Stage I, dead, 394 days
54.9
TCGA-BC-A10W-01A
50 years, male, asian, stage:'--, dead, 91 days
53.8
TCGA-FV-A495-01A
51 years, female, white, stage:Stage II, alive, 1 days
53.7
TCGA-DD-AAE2-01A
51 years, male, asian, stage:Stage I, alive, 638 days
53.3
TCGA-CC-5258-01A
48 years, male, asian, stage:Stage II, dead, 129 days
53.0
TCGA-DD-A4NJ-01A
54 years, female, white, stage:Stage II, alive, 928 days
52.7
TCGA-ZP-A9CY-01A
66 years, female, white, stage:'--, alive, 782 days
51.4
TCGA-K7-A5RF-01A
64 years, male, white, stage:Stage I, alive, 631 days
51.2
TCGA-ED-A8O6-01A
50 years, female, asian, stage:Stage IIIA, dead, 56 days
50.9
TCGA-ED-A66Y-01A
51 years, female, asian, stage:Stage IIIA, dead, 296 days
50.8
TCGA-DD-AAVR-01A
44 years, male, asian, stage:Stage I, alive, 2513 days
50.6
TCGA-O8-A75V-01A
54 years, male, stage:Stage I, alive, 538 days
50.0
TCGA-G3-AAV3-01A
58 years, female, white, stage:Stage II, alive, 412 days
49.7
TCGA-DD-AADP-01A
45 years, male, asian, stage:Stage I, alive, 458 days
47.2
TCGA-DD-AAC9-01A
51 years, male, asian, stage:Stage I, alive, 347 days
45.8
TCGA-CC-A8HV-01A
51 years, female, asian, stage:Stage II, dead, 279 days
45.5
TCGA-KR-A7K0-01A
65 years, male, white, stage:Stage I, dead, 65 days
42.9
TCGA-DD-A1EC-01A
20 years, female, white, stage:Stage I, alive, 602 days
42.5
TCGA-G3-A3CG-01A
80 years, male, white, stage:Stage I, alive, 673 days
42.1
TCGA-DD-AAEK-01A
51 years, male, asian, stage:Stage II, alive, 1067 days
42.0
TCGA-CC-A8HU-01A
39 years, female, asian, stage:Stage IIIA, dead, 344 days
41.5
TCGA-XR-A8TC-01A
43 years, female, white, stage:Stage I, alive, 1339 days
41.0
TCGA-ZS-A9CD-01A
73 years, male, white, stage:Stage II, dead, 1386 days
39.9
TCGA-2Y-A9HB-01A
66 years, male, stage:Stage I, alive, 260 days
38.9
TCGA-DD-A4NL-01A
46 years, male, white, stage:Stage I, alive, 1711 days
38.3
TCGA-T1-A6J8-01A
68 years, male, white, stage:'--, alive, 23 days
37.8
TCGA-DD-AADY-01A
55 years, female, asian, stage:Stage I, alive, 555 days
36.6
TCGA-DD-AAVS-01A
56 years, male, asian, stage:Stage I, alive, 1823 days
36.4
TCGA-BC-A10S-01A
81 years, male, white, stage:'--, dead, 1423 days
36.0
TCGA-DD-AACT-01A
69 years, female, asian, stage:Stage I, alive, 1562 days
35.0
TCGA-ZP-A9CZ-01A
72 years, male, asian, stage:'--, alive, 706 days
34.9
TCGA-ZP-A9D0-01A
67 years, female, black or african american, stage:'--, alive, 1091 days
34.6
TCGA-G3-A25X-01A
73 years, male, asian, stage:Stage II, alive, 1779 days
34.5
TCGA-CC-A8HS-01A
18 years, male, asian, stage:Stage IIIC, dead, 300 days
34.1
TCGA-DD-A4NQ-01A
60 years, male, white, stage:Stage II, dead, 373 days
33.7
TCGA-G3-A5SJ-01A
59 years, male, white, stage:Stage I, alive, 698 days
33.6
TCGA-DD-AAVZ-01A
38 years, male, asian, stage:Stage I, alive, 1900 days
33.5
TCGA-DD-A11D-01A
57 years, female, white, stage:Stage I, dead, 1560 days
32.7
TCGA-NI-A8LF-01A
74 years, male, white, stage:Stage I, alive, 799 days
32.4
TCGA-5C-AAPD-01A
61 years, male, asian, stage:Stage II, alive, 20 days
32.3
TCGA-KR-A7K2-01A
64 years, male, white, stage:Stage I, alive, 829 days
32.3
TCGA-DD-AAEG-01A
59 years, female, asian, stage:Stage I, alive, 719 days
30.9
TCGA-EP-A3JL-01A
76 years, male, white, stage:Stage I, alive, 303 days
30.6
TCGA-DD-AAE7-01A
72 years, male, asian, stage:Stage I, alive, 644 days
30.3
TCGA-DD-A73C-01A
65 years, female, white, stage:Stage IIIA, alive, 701 days
30.3
TCGA-DD-AAVQ-01A
38 years, male, asian, stage:Stage I, alive, 2728 days
30.0
TCGA-DD-AADK-01A
68 years, female, asian, stage:Stage II, alive, 1049 days
29.6
TCGA-DD-AADI-01A
43 years, female, asian, stage:Stage I, alive, 1085 days
29.3
TCGA-FV-A2QQ-01A
80 years, male, white, stage:Stage I, alive, 729 days
29.0
TCGA-DD-A1EB-01A
72 years, female, stage:Stage I, alive, 2017 days
28.6
TCGA-DD-A119-01A
40 years, male, asian, stage:Stage IV, dead, 223 days
28.3
TCGA-CC-A7IE-01A
57 years, male, asian, stage:Stage IIIA, dead, 217 days
27.9
TCGA-G3-AAV6-01A
53 years, female, white, stage:Stage IIIA, dead, 65 days
27.7
TCGA-RC-A7SK-01A
59 years, male, asian, stage:Stage I, alive, 472 days
27.6
TCGA-DD-AADA-01A
66 years, female, asian, stage:Stage I, alive, 1233 days
26.6
TCGA-K7-A5RG-01A
66 years, male, black or african american, stage:Stage I, alive, 519 days
26.3
TCGA-DD-AA3A-01A
81 years, female, white, stage:Stage I, dead, 410 days
26.2
TCGA-BC-A216-01A
62 years, female, white, stage:Stage IIIA, alive, 1351 days
25.8
TCGA-WQ-A9G7-01A
71 years, female, white, stage:'--, alive, 30 days
25.6
TCGA-ED-A459-01A
47 years, male, asian, stage:Stage II, alive, 910 days
25.6
TCGA-EP-A3RK-01A
73 years, male, white, stage:Stage IIIA, alive, 363 days
25.3
TCGA-2Y-A9GT-01A
51 years, male, white, stage:Stage I, dead, 1624 days
25.2
TCGA-ES-A2HT-01A
54 years, male, black or african american, stage:Stage I, dead, 438 days
24.9
TCGA-RC-A6M6-01A
75 years, male, white, stage:Stage II, alive, 9 days
23.9
TCGA-KR-A7K8-01A
57 years, male, stage:Stage I, alive, 906 days
23.8
TCGA-WQ-AB4B-01A
62 years, male, white, stage:Stage II, alive, 395 days
23.6
TCGA-DD-AADB-01A
51 years, male, asian, stage:Stage I, alive, 1242 days
23.6
TCGA-K7-A6G5-01A
66 years, male, white, stage:Stage I, alive, 512 days
23.5
TCGA-LG-A9QC-01A
48 years, male, white, stage:Stage I, alive, 425 days
23.3
TCGA-DD-AACC-01A
61 years, male, asian, stage:Stage I, dead, 1685 days
23.3
TCGA-G3-AAV1-01A
51 years, male, asian, stage:Stage IIIC, dead, 359 days
23.2
TCGA-DD-AAE3-01A
50 years, male, asian, stage:Stage I, alive, 566 days
23.1
TCGA-CC-A7IH-01A
58 years, male, asian, stage:Stage IIIA, alive, 365 days
22.6
TCGA-EP-A26S-01A
70 years, male, white, stage:Stage I, alive, 608 days
22.1
TCGA-NI-A4U2-01A
71 years, male, white, stage:Stage IIIA, dead, 1791 days
21.8
TCGA-EP-A2KC-01A
62 years, male, black or african american, stage:Stage I, dead, 19 days
21.7
TCGA-DD-A3A5-01A
66 years, female, white, stage:Stage III, dead, 3125 days
21.3
TCGA-DD-A4NI-01A
67 years, male, white, stage:Stage II, alive, 816 days
21.2
TCGA-ED-A8O5-01A
59 years, female, asian, stage:Stage IIIA, alive, 406 days
21.2
TCGA-DD-A113-01A
55 years, female, white, stage:Stage II, alive, 2425 days
20.9
TCGA-DD-A1EE-01A
73 years, male, white, stage:Stage IIIA, dead, 349 days
20.8
TCGA-WX-AA44-01A
64 years, female, white, stage:Stage I, alive, 615 days
20.3
TCGA-DD-AADC-01A
53 years, male, asian, stage:Stage I, dead, 425 days
20.1
TCGA-DD-AACA-01A
65 years, male, asian, stage:Stage I, alive, 2301 days
20.1
TCGA-RC-A7SH-01A
42 years, male, asian, stage:Stage II, alive, 468 days
20.0
TCGA-GJ-A6C0-01A
75 years, female, white, stage:Stage II, dead, 31 days
19.9
TCGA-DD-AAW2-01A
69 years, male, asian, stage:Stage I, alive, 1855 days
19.6
TCGA-G3-A7M8-01A
31 years, male, asian, stage:Stage I, alive, 430 days
19.1
TCGA-G3-A25Z-01A
58 years, male, asian, stage:Stage I, alive, 655 days
19.0
TCGA-DD-A11B-01A
73 years, male, white, stage:Stage I, dead, 14 days
18.7
TCGA-CC-A7IG-01A
47 years, male, asian, stage:Stage II, dead, 299 days
18.7
TCGA-4R-AA8I-01A
66 years, male, white, stage:Stage II, dead, 262 days
18.1
TCGA-G3-A5SK-01A
58 years, male, white, stage:Stage I, alive, 744 days
18.0
TCGA-DD-AACK-01A
70 years, male, asian, stage:Stage I, alive, 9 days
17.8
TCGA-G3-A3CH-01A
53 years, male, asian, stage:Stage IIIA, alive, 780 days
17.8
TCGA-DD-AAVX-01A
38 years, male, asian, stage:Stage II, alive, 1718 days
17.8
TCGA-QA-A7B7-01A
48 years, male, black or african american, stage:Stage II, alive, 94 days
17.8
TCGA-DD-A1EK-01A
64 years, female, white, stage:Stage IVB, dead, 558 days
17.6
TCGA-BC-A69I-01A
69 years, male, white, stage:Stage I, alive, 387 days
17.6
TCGA-DD-AAD8-01A
73 years, female, asian, stage:Stage I, alive, 1219 days
17.6
TCGA-BC-A3KG-01A
68 years, female, white, stage:Stage II, alive, 680 days
17.5
TCGA-DD-A4NK-01A
80 years, female, white, stage:Stage IIIA, dead, 1210 days
17.2
TCGA-DD-A73F-01A
77 years, female, white, stage:Stage I, alive, 1085 days
16.2
TCGA-BC-A8YO-01A
66 years, female, white, stage:Stage IIIC, alive, 562 days
16.1
TCGA-2Y-A9GV-01A
54 years, female, white, stage:Stage I, dead, 2532 days
15.9
TCGA-DD-AAW3-01A
69 years, male, asian, stage:Stage I, alive, 1633 days
15.8
TCGA-ED-A7PZ-01A
61 years, male, asian, stage:Stage II, alive, 6 days
15.7
TCGA-2Y-A9H8-01A
85 years, female, white, stage:'--, dead, 633 days
15.7
TCGA-G3-A7M7-01A
65 years, male, white, stage:Stage I, alive, 361 days
15.6
TCGA-FV-A23B-01A
70 years, female, white, stage:Stage II, dead, 1852 days
15.5
TCGA-2Y-A9H9-01A
70 years, male, white, stage:Stage I, alive, 697 days
15.5
TCGA-BC-A10Y-01A
76 years, male, white, stage:'--, dead, 711 days
15.1
TCGA-DD-A1EJ-01A
71 years, female, white, stage:Stage IIIC, dead, 1005 days
15.1
TCGA-WX-AA46-01A
61 years, male, white, stage:Stage II, alive, 756 days
15.1
TCGA-DD-A39X-01A
78 years, female, white, stage:Stage I, dead, 1694 days
15.0
TCGA-RC-A7SF-01A
66 years, male, asian, stage:Stage I, alive, 579 days
14.8
TCGA-DD-AAVP-01A
48 years, male, asian, stage:Stage I, alive, 2752 days
14.6
TCGA-DD-AACZ-01A
63 years, female, asian, stage:Stage I, dead, 171 days
14.6
TCGA-BC-A3KF-01A
66 years, female, white, stage:Stage I, alive, 8 days
14.6
TCGA-EP-A2KA-01A
52 years, female, white, stage:Stage IIIA, dead, 627 days
14.3
TCGA-UB-A7MF-01A
56 years, male, white, stage:Stage IIIA, dead, 214 days
14.2
TCGA-DD-AAEE-01A
55 years, male, asian, stage:Stage I, alive, 810 days
14.1
TCGA-G3-A5SL-01A
70 years, male, white, stage:Stage II, alive, 621 days
14.0
TCGA-DD-AADM-01A
58 years, male, asian, stage:Stage II, dead, 12 days
13.9
TCGA-DD-A4NG-01A
77 years, male, white, stage:Stage IIIA, dead, 802 days
13.8
TCGA-DD-AACY-01A
61 years, male, asian, stage:Stage I, alive, 1450 days
13.8
TCGA-DD-A3A2-01A
76 years, female, white, stage:Stage I, dead, 2131 days
13.4
TCGA-UB-A7MC-01A
59 years, male, white, stage:Stage IIIA, alive, 500 days
13.1
TCGA-G3-AAUZ-01A
48 years, male, stage:Stage I, alive, 480 days
13.0
TCGA-CC-A5UD-01A
45 years, male, asian, stage:Stage IIIA, dead, 304 days
13.0
TCGA-2Y-A9HA-01A
70 years, male, white, stage:Stage II, dead, 36 days
12.8
TCGA-BC-A10U-01A
69 years, male, white, stage:'--, dead, 837 days
12.8
TCGA-DD-A116-01A
68 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.6
TCGA-DD-AACD-01A
48 years, male, asian, stage:Stage I, dead, 381 days
12.3
TCGA-DD-A4NF-01A
72 years, male, white, stage:Stage I, alive, 942 days
12.3
TCGA-DD-A39Y-01A
67 years, male, asian, stage:Stage I, dead, 171 days
12.2
TCGA-G3-A3CK-01A
61 years, male, asian, stage:Stage I, alive, 585 days
12.2
TCGA-BD-A2L6-01A
69 years, male, white, stage:'--, alive, 1363 days
12.2
TCGA-CC-A9FS-01A
55 years, male, asian, stage:Stage II, alive, 211 days
12.1
TCGA-CC-A7IF-01A
59 years, male, asian, stage:Stage IIIA, dead, 649 days
12.0
TCGA-DD-AACI-01A
69 years, male, asian, stage:Stage II, alive, 1618 days
11.8
TCGA-DD-A1ED-01A
68 years, male, white, stage:Stage I, alive, 2301 days
11.7
TCGA-DD-AAC8-01A
72 years, male, asian, stage:Stage I, dead, 16 days
11.6
TCGA-G3-A5SI-01A
44 years, male, asian, stage:Stage II, dead, 768 days
11.3
TCGA-FV-A3R2-01A
75 years, male, white, stage:Stage I, dead, 194 days
11.2
TCGA-UB-A7MB-01A
24 years, male, white, stage:Stage II, alive, 601 days
11.2
TCGA-ZS-A9CF-01A
64 years, male, white, stage:Stage II, alive, 2412 days
11.1
TCGA-DD-AACS-01A
39 years, male, asian, stage:Stage I, alive, 1804 days
11.1
TCGA-DD-AAEH-01A
73 years, male, asian, stage:Stage I, alive, 784 days
11.1
TCGA-DD-AADL-01A
58 years, male, asian, stage:Stage I, alive, 636 days
11.0
TCGA-LG-A6GG-01A
79 years, female, white, stage:Stage II, alive, 387 days
10.9
TCGA-G3-A3CI-01A
71 years, male, white, stage:Stage I, alive, 180 days
10.5
TCGA-DD-A3A4-01A
37 years, male, white, stage:Stage IIIA, dead, 612 days
10.3
TCGA-CC-A7IK-01A
59 years, male, asian, stage:Stage IIIA, dead, 262 days
10.3
TCGA-G3-A25U-01A
63 years, female, asian, stage:Stage I, alive, 1636 days
10.2
TCGA-CC-A9FW-01A
68 years, male, asian, stage:Stage IIIA, alive, 248 days
10.2
TCGA-EP-A12J-01A
62 years, male, black or african american, stage:Stage I, alive, 570 days
10.2
TCGA-DD-A39W-01A
29 years, female, white, stage:Stage III, dead, 827 days
10.1
TCGA-MI-A75I-01A
61 years, male, black or african american, stage:'--, alive, 630 days
10.1
TCGA-BW-A5NO-01A
50 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.0
TCGA-CC-A8HT-01A
74 years, male, asian, stage:Stage IIIA, dead, 140 days
9.9
TCGA-3K-AAZ8-01A
65 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.9
TCGA-DD-A1EL-01A
23 years, male, black or african american, stage:Stage II, dead, 415 days
9.8
TCGA-2Y-A9H4-01A
68 years, male, black or african american, stage:Stage I, alive, 1452 days
9.6
TCGA-DD-A73E-01A
66 years, male, white, stage:Stage I, alive, 44 days
9.6
TCGA-DD-AACE-01A
62 years, male, asian, stage:Stage I, alive, 2184 days
9.5
TCGA-BC-A69H-01A
64 years, male, white, stage:Stage II, alive, 444 days
9.4
TCGA-RC-A7SB-01A
53 years, male, asian, stage:Stage II, alive, 588 days
9.3
TCGA-MI-A75H-01A
77 years, male, white, stage:'--, alive, 747 days
9.1
TCGA-DD-AACB-01A
74 years, female, asian, stage:Stage I, alive, 2324 days
9.1
TCGA-DD-A73G-01A
73 years, female, white, stage:Stage I, alive, 3478 days
9.0
TCGA-DD-A73A-01A
71 years, male, white, stage:Stage I, alive, 728 days
8.9
TCGA-2Y-A9H3-01A
45 years, male, white, stage:Stage II, alive, 1516 days
8.7
TCGA-MR-A520-01A
58 years, male, white, stage:Stage I, alive, 229 days
8.4
TCGA-G3-AAV4-01A
83 years, female, white, stage:Stage I, dead, 27 days
8.1
TCGA-ZP-A9D4-01A
64 years, female, white, stage:'--, alive, 395 days
8.1
TCGA-ZS-A9CG-01A
55 years, male, white, stage:Stage II, alive, 341 days
8.0
TCGA-DD-AADG-01A
70 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.9
TCGA-DD-AAEI-01A
72 years, male, asian, stage:Stage I, alive, 1531 days
7.5
TCGA-2Y-A9GU-01A
55 years, female, white, stage:Stage I, alive, 1939 days
7.5
TCGA-FV-A496-01A
84 years, female, white, stage:Stage I, alive, 10 days
7.2
TCGA-DD-A73B-01A
72 years, female, white, stage:Stage I, dead, 283 days
7.2
TCGA-DD-AAW1-01A
55 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.9
TCGA-RG-A7D4-01A
69 years, male, black or african american, stage:Stage II, alive, 1098 days
6.6
TCGA-2Y-A9GZ-01A
82 years, female, white, stage:Stage II, dead, 848 days
6.6
TCGA-2Y-A9H0-01A
49 years, male, white, stage:Stage IIIA, alive, 3675 days
6.6
TCGA-DD-AAE4-01A
49 years, female, asian, stage:Stage I, alive, 608 days
6.5
TCGA-DD-AACO-01A
40 years, male, asian, stage:Stage I, alive, 1876 days
6.4
TCGA-DD-AACV-01A
53 years, male, asian, stage:Stage I, alive, 1531 days
6.3
TCGA-ES-A2HS-01A
80 years, male, white, stage:Stage I, dead, 688 days
6.3
TCGA-MI-A75G-01A
63 years, male, white, stage:Stage II, alive, 698 days
6.1
TCGA-XR-A8TF-01A
74 years, male, white, stage:Stage I, dead, 693 days
6.0
TCGA-DD-A1EA-01A
68 years, male, asian, stage:Stage II, alive, 2415 days
5.9
TCGA-RC-A6M4-01A
74 years, female, white, stage:Stage IIIA, alive, 22 days
5.7
TCGA-LG-A9QD-01A
68 years, male, white, stage:Stage IIIA, alive, 366 days
5.7
TCGA-EP-A2KB-01A
46 years, female, white, stage:Stage I, dead, 596 days
5.7
TCGA-DD-AACP-01A
64 years, male, asian, stage:Stage I, alive, 415 days
5.6
TCGA-FV-A4ZQ-01A
52 years, male, white, stage:Stage I, alive, 12 days
5.4
TCGA-BC-A217-01A
75 years, female, white, stage:Stage II, dead, 1397 days
5.4
TCGA-5R-AA1C-01A
57 years, male, white, stage:Stage II, alive, 520 days
5.3
TCGA-DD-A4NP-01A
32 years, male, white, stage:Stage I, alive, 3308 days
5.1
TCGA-FV-A4ZP-01A
78 years, male, white, stage:Stage IIIA, dead, 2486 days
5.1
TCGA-ED-A7PY-01A
20 years, female, asian, stage:Stage II, alive, 390 days
5.1
TCGA-G3-AAV2-01A
50 years, male, white, stage:Stage I, alive, 372 days
5.1
TCGA-DD-AACL-01A
66 years, female, asian, stage:Stage I, dead, 107 days
5.1
TCGA-DD-AAE1-01A
52 years, male, asian, stage:Stage I, alive, 552 days
4.9
TCGA-G3-AAV0-01A
58 years, male, asian, stage:Stage I, alive, 476 days
4.8
TCGA-DD-A3A7-01A
67 years, male, stage:Stage IIIB, dead, 419 days
4.8
TCGA-DD-AADR-01A
58 years, male, asian, stage:Stage I, alive, 2028 days
4.5
TCGA-WJ-A86L-01A
68 years, female, white, stage:Stage I, alive, 345 days
4.4
TCGA-DD-AACW-01A
43 years, male, asian, stage:Stage I, alive, 1424 days
4.3
TCGA-G3-A3CJ-01A
52 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.2
TCGA-CC-A123-01A
24 years, female, asian, stage:Stage IIIA, alive, 219 days
3.9
TCGA-DD-AACF-01A
68 years, male, asian, stage:Stage I, dead, 365 days
3.9
TCGA-G3-AAV5-01A
67 years, male, white, stage:Stage II, alive, 354 days
3.9
TCGA-ZS-A9CE-01A
79 years, female, white, stage:Stage II, alive, 1241 days
3.8
TCGA-BC-A10Z-01A
62 years, female, white, stage:Stage I, dead, 34 days
3.8
TCGA-DD-AAEA-01A
65 years, male, asian, stage:Stage I, alive, 575 days
3.6
TCGA-DD-AACQ-01A
50 years, male, asian, stage:Stage II, dead, 432 days
3.6
TCGA-DD-AADJ-01A
70 years, female, asian, stage:Stage I, alive, 1066 days
3.4
TCGA-2Y-A9GY-01A
64 years, female, white, stage:Stage II, dead, 757 days
3.3
TCGA-DD-A3A8-01A
75 years, male, white, stage:Stage II, dead, 11 days
3.3
TCGA-DD-A39V-01A
77 years, male, white, stage:Stage II, dead, 643 days
3.2
TCGA-DD-AACJ-01A
75 years, male, asian, stage:Stage II, alive, 2102 days
3.0
TCGA-KR-A7K7-01A
61 years, female, white, stage:Stage II, alive, 951 days
3.0
TCGA-DD-AADD-01A
51 years, male, asian, stage:Stage I, alive, 1231 days
2.9
TCGA-DD-AAEB-01A
60 years, male, asian, stage:Stage I, alive, 478 days
2.9
TCGA-DD-AAD5-01A
54 years, male, asian, stage:Stage I, alive, 1345 days
2.8
TCGA-WX-AA47-01A
33 years, female, white, stage:Stage IIIA, dead, 556 days
2.6
TCGA-G3-A6UC-01A
65 years, male, white, stage:Stage IIIB, alive, 671 days
2.5
TCGA-BC-A5W4-01A
69 years, male, white, stage:Stage IIIA, dead, 547 days
2.5
TCGA-2Y-A9H7-01A
81 years, female, white, stage:Stage I, alive, 1168 days
2.3
TCGA-DD-AACX-01A
66 years, male, asian, stage:Stage II, alive, 170 days
2.3
TCGA-CC-A5UE-01A
48 years, male, asian, stage:Stage IIIB, dead, 272 days
2.3
TCGA-DD-AADQ-01A
59 years, male, asian, stage:Stage II, alive, 436 days
2.3
TCGA-DD-A3A3-01A
45 years, male, asian, stage:Stage I, dead, 535 days
2.3
TCGA-G3-A7M5-01A
76 years, male, asian, stage:Stage I, alive, 447 days
2.0
TCGA-DD-AADF-01A
64 years, female, asian, stage:Stage I, dead, 115 days
2.0
TCGA-DD-A39Z-01A
43 years, female, stage:Stage II, dead, 601 days
2.0
TCGA-RC-A7S9-01A
47 years, female, asian, stage:Stage I, alive, 640 days
1.9
TCGA-DD-AAE6-01A
59 years, female, asian, stage:Stage I, alive, 141 days
1.9
TCGA-DD-AAVY-01A
56 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.9
TCGA-MI-A75C-01A
64 years, male, white, stage:Stage I, alive, 291 days
1.9
TCGA-DD-AADO-01A
55 years, male, asian, stage:Stage I, alive, 453 days
1.9
TCGA-G3-A25S-01A
64 years, male, white, stage:Stage I, dead, 416 days
1.9
TCGA-DD-AAVU-01A
46 years, male, asian, stage:Stage II, alive, 2202 days
1.9
TCGA-DD-AADU-01A
60 years, male, asian, stage:Stage II, alive, 554 days
1.6
TCGA-CC-A7IL-01A
61 years, male, asian, stage:Stage IIIA, dead, 278 days
1.5
TCGA-2Y-A9H1-01A
58 years, male, white, stage:Stage I, dead, 1229 days
1.5
TCGA-DD-A3A1-01A
65 years, male, stage:Stage IIIA, dead, 233 days
1.3
TCGA-DD-A73D-01A
68 years, female, white, stage:Stage II, alive, 693 days
1.2
TCGA-DD-AACG-01A
52 years, male, asian, stage:Stage II, dead, 469 days
1.0
TCGA-DD-AAED-01A
51 years, male, asian, stage:Stage I, alive, 763 days
0.9
TCGA-CC-5259-01A
60 years, female, asian, stage:Stage IIIC, alive, 250 days
0.9
TCGA-DD-AAE9-01A
69 years, male, asian, stage:Stage I, alive, 722 days
0.8
TCGA-DD-AADS-01A
63 years, male, asian, stage:Stage I, alive, 474 days
0.7
TCGA-DD-AAD6-01A
66 years, male, asian, stage:Stage IIIA, alive, 672 days
0.7
TCGA-DD-AADN-01A
59 years, male, asian, stage:Stage I, alive, 898 days
0.3
TCGA-DD-AAD0-01A
73 years, female, asian, stage:Stage I, alive, 137 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
COL3A1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
114.6
Number of samples
231
Samples
Sample
Description
TPM
DO45155
69 years, male, NA, stage:2, alive, 2160 days
4817.0
DO45139
63 years, male, NA, stage:3, alive, 1320 days
1459.9
DO45279
67 years, male, NA, stage:3, alive, 1290 days
671.1
DO45103
47 years, male, NA, stage:3, alive, 450 days
578.9
DO45287
74 years, male, NA, stage:1, alive, 390 days
544.1
DO45177
81 years, female, NA, stage:3, alive, 1260 days
531.1
DO45297
61 years, female, NA, stage:4, dead, 1260 days
479.2
DO45283
60 years, male, NA, stage:3, alive, 510 days
444.2
DO48720
62 years, female, NA, stage:2, alive, 570 days
438.9
DO45301
56 years, male, NA, stage:2, dead, 1440 days
425.4
DO50778
60 years, male, NA, stage:4, alive, 630 days
418.8
DO23535
67 years, male, NA, stage:1, alive, 960 days
403.7
DO45249
57 years, male, NA, stage:1, alive, 630 days
380.3
DO45307
54 years, female, NA, stage:4, dead, 240 days
371.9
DO45211
76 years, male, NA, stage:3, alive, 240 days
370.6
DO23530
53 years, male, NA, stage:4, dead, 180 days
354.3
DO45135
77 years, male, NA, stage:1, alive, 1410 days
349.2
DO48712
50 years, male, NA, stage:2, alive, 810 days
346.6
DO45231
84 years, male, NA, stage:2, alive, 930 days
344.0
DO45289
78 years, female, NA, stage:3, alive, 360 days
338.6
DO50800
74 years, male, NA, stage:2, alive, 510 days
336.4
DO45165
75 years, male, NA, stage:2, alive, 690 days
330.7
DO48697
64 years, female, NA, stage:2, dead, 810 days
302.4
DO45303
62 years, female, NA, stage:3, alive, 990 days
295.4
DO45263
67 years, male, NA, stage:3, dead, 270 days
289.7
DO45233
83 years, male, NA, stage:3, alive, 900 days
289.5
DO45157
62 years, male, NA, stage:2, alive, 1980 days
281.1
DO45223
67 years, male, NA, stage:4, alive, 1020 days
252.2
DO50809
56 years, male, NA, stage:3, dead, 720 days
248.7
DO45137
38 years, male, NA, stage:1, alive, 1320 days
244.6
DO45201
49 years, male, NA, stage:1, alive, 900 days
227.7
DO45213
58 years, male, NA, stage:1, alive, 1200 days
220.9
DO45305
66 years, male, NA, stage:4, alive, 300 days
218.4
DO45207
68 years, male, NA, stage:1, alive, 1050 days
214.7
DO45243
74 years, female, NA, stage:3, alive, 930 days
207.1
DO45251
57 years, female, NA, stage:2, alive, 900 days
206.8
DO45119
74 years, male, NA, stage:3, dead, 510 days
196.3
DO48747
62 years, male, NA, stage:3, alive, 540 days
193.8
DO45153
77 years, female, NA, stage:2, alive, 1380 days
192.0
DO23515
71 years, male, NA, stage:2, alive, 1230 days
185.1
DO45189
85 years, female, NA, stage:2, alive, 1200 days
180.7
DO48700
78 years, female, NA, stage:2, alive, 810 days
174.9
DO50855
47 years, male, NA, stage:2, alive, 570 days
158.1
DO48717
54 years, male, NA, stage:4, dead, 180 days
146.5
DO45285
59 years, male, NA, stage:3, alive, 480 days
146.2
DO48728
74 years, female, NA, stage:2, alive, 150 days
145.8
DO45225
69 years, male, NA, stage:1, alive, 1050 days
144.3
DO45245
75 years, female, NA, stage:2, dead, 240 days
139.3
DO48736
76 years, female, NA, stage:1, alive, 600 days
135.8
DO48701
78 years, male, NA, stage:2, alive, 780 days
134.0
DO45092
62 years, male, NA, stage:4, dead, 1200 days
130.0
DO23510
80 years, female, NA, stage:2, alive, 870 days
125.5
DO45229
74 years, male, NA, stage:1, alive, 990 days
124.9
DO45273
62 years, male, NA, stage:2, alive, 480 days
122.6
DO50805
72 years, male, NA, stage:2, alive, 690 days
119.4
DO48733
72 years, male, NA, stage:2, alive, 600 days
119.3
DO45275
65 years, male, NA, stage:3, dead, 10 days
116.0
DO23547
74 years, male, NA, stage:1, alive, 1020 days
114.8
DO48743
69 years, female, NA, stage:2, alive, 570 days
107.4
DO45281
83 years, male, NA, stage:4, alive, 750 days
103.4
DO50820
77 years, female, NA, stage:3, alive, 510 days
96.3
DO23526
66 years, male, NA, stage:3, alive, 1050 days
91.1
DO23524
71 years, female, NA, stage:2, alive, 1050 days
90.7
DO45095
66 years, male, NA, stage:2, alive, 1620 days
90.7
DO45197
51 years, male, NA, stage:2, alive, 1170 days
90.3
DO50774
68 years, female, NA, stage:2, alive, 720 days
89.6
DO45141
73 years, male, NA, stage:2, alive, 1320 days
88.7
DO45161
74 years, male, NA, stage:2, dead, 540 days
88.2
DO45203
71 years, female, NA, stage:2, alive, 1170 days
85.1
DO45159
65 years, male, NA, stage:3, alive, 1470 days
84.9
DO45179
78 years, female, NA, stage:2, alive, 600 days
84.1
DO45299
70 years, female, NA, stage:1, alive, 1440 days
81.6
DO45205
67 years, female, NA, stage:2, dead, 90 days
80.1
DO45277
64 years, male, NA, stage:3, alive, 600 days
79.4
DO50850
74 years, male, NA, stage:3, alive, 720 days
78.5
DO50776
75 years, male, NA, stage:1, alive, 690 days
77.1
DO50829
78 years, male, NA, stage:3, alive, 570 days
76.5
DO23519
65 years, male, NA, stage:3, alive, 630 days
74.5
DO45247
31 years, female, NA, stage:2, alive, 210 days
74.0
DO48704
68 years, female, NA, stage:3, alive, 750 days
73.7
DO45187
32 years, female, NA, stage:1, alive, 1260 days
70.6
DO45109
63 years, male, NA, stage:2, alive, 1590 days
69.9
DO45219
78 years, male, NA, stage:2, alive, 1080 days
68.5
DO45235
68 years, female, NA, stage:1, alive, 900 days
64.8
DO23527
72 years, male, NA, stage:1, alive, 1050 days
64.0
DO23541
65 years, male, NA, stage:2, alive, 930 days
62.9
DO45121
61 years, male, NA, stage:3, alive, 1530 days
62.2
DO23546
63 years, male, NA, stage:2, alive, 1050 days
57.4
DO45253
50 years, male, NA, stage:2, alive, 870 days
56.9
DO23551
73 years, male, NA, stage:3, dead, 150 days
56.6
DO45099
46 years, male, NA, stage:3, alive, 1590 days
55.5
DO48679
72 years, male, NA, stage:2, alive, 1200 days
55.3
DO48672
81 years, male, NA, stage:2, alive, 450 days
55.0
DO50803
62 years, female, NA, stage:1, alive, 540 days
54.9
DO45257
46 years, male, NA, stage:3, alive, 810 days
54.0
DO45181
84 years, female, NA, stage:2, alive, 1200 days
53.3
DO23518
67 years, male, NA, stage:2, alive, 1320 days
53.3
DO50791
79 years, female, NA, stage:1, dead, 480 days
52.5
DO48742
76 years, male, NA, stage:2, alive, 600 days
51.4
DO48759
73 years, male, NA, stage:3, alive, 720 days
51.1
DO23531
78 years, female, NA, stage:3, alive, 900 days
48.6
DO45143
69 years, male, NA, stage:3, alive, 1290 days
47.9
DO45261
74 years, male, NA, stage:3, alive, 990 days
47.0
DO45259
65 years, male, NA, stage:3, alive, 330 days
45.5
DO23538
67 years, male, NA, stage:2, alive, 450 days
44.4
DO23537
79 years, male, NA, stage:2, dead, 900 days
43.2
DO45127
73 years, male, NA, stage:3, dead, 420 days
41.9
DO45215
65 years, male, NA, stage:2, alive, 1170 days
40.7
DO48730
73 years, female, NA, stage:2, alive, 630 days
40.3
DO50819
72 years, female, NA, stage:2, alive, 510 days
40.1
DO48737
52 years, male, NA, stage:1, alive, 720 days
39.3
DO48725
66 years, male, NA, stage:1, alive, 780 days
38.8
DO23543
63 years, male, NA, stage:2, alive, 1020 days
36.6
DO45241
49 years, male, NA, stage:1, alive, 1080 days
35.5
DO23550
69 years, male, NA, stage:1, alive, 990 days
34.8
DO23545
67 years, male, NA, stage:2, dead, 570 days
34.8
DO23523
52 years, male, NA, stage:3, alive, 1080 days
33.6
DO45221
75 years, female, NA, stage:4, dead, 390 days
32.6
DO23536
56 years, male, NA, stage:2, alive, 930 days
31.7
DO227801
77 years, female, NA, stage:1, alive, 660 days
31.5
DO45267
73 years, male, NA, stage:3, dead, 570 days
30.5
DO23528
45 years, female, NA, stage:2, alive, 1020 days
30.0
DO45096
69 years, male, NA, stage:2, dead, 1290 days
29.9
DO48682
72 years, female, NA, stage:3, dead, 120 days
29.3
DO48677
58 years, male, NA, stage:3, alive, 1140 days
27.6
DO45191
61 years, female, NA, stage:2, alive, 1200 days
26.4
DO45094
76 years, male, NA, stage:3, alive, 1650 days
25.6
DO48760
70 years, female, NA, stage:2, alive, 690 days
25.4
DO45193
68 years, female, NA, stage:4, dead, 120 days
24.9
DO50787
63 years, male, NA, stage:3, alive, 480 days
24.6
DO45123
78 years, female, NA, stage:2, dead, 570 days
23.7
DO50802
49 years, male, NA, stage:2, alive, 930 days
23.6
DO23529
72 years, male, NA, stage:4, alive, 930 days
23.3
DO23548
78 years, female, NA, stage:1, alive, 840 days
21.6
DO50789
73 years, female, NA, stage:2, alive, 570 days
21.5
DO50808
68 years, male, NA, stage:2, alive, 570 days
21.1
DO50813
56 years, male, NA, stage:2, alive, 420 days
20.8
DO50807
67 years, male, NA, stage:1, alive, 540 days
20.2
DO45269
59 years, male, NA, stage:3, alive, 750 days
20.2
DO45111
74 years, male, NA, stage:2, alive, 1590 days
19.4
DO45185
89 years, male, NA, stage:2, alive, 600 days
19.0
DO45129
61 years, male, NA, stage:3, alive, 1470 days
18.6
DO48732
73 years, male, NA, stage:3, alive, 630 days
18.0
DO45217
69 years, female, NA, stage:3, dead, 270 days
15.9
DO23514
64 years, male, NA, stage:2, alive, 1290 days
15.3
DO48716
71 years, male, NA, stage:2, alive, 720 days
14.2
DO45171
56 years, male, NA, stage:3, alive, 600 days
14.1
DO23552
80 years, female, NA, stage:1, alive, 810 days
13.8
DO50806
70 years, male, NA, stage:4, alive, 540 days
13.3
DO48693
71 years, male, NA, stage:2, alive, 900 days
13.2
DO23525
71 years, male, NA, stage:4, alive, 1050 days
13.1
DO50804
81 years, male, NA, stage:2, alive, 720 days
12.5
DO50793
76 years, male, NA, stage:4, alive, 540 days
12.3
DO45183
72 years, female, NA, stage:2, dead, 570 days
12.3
DO45227
57 years, female, NA, stage:2, alive, 1020 days
12.2
DO23544
67 years, male, NA, stage:2, alive, 960 days
11.9
DO48721
58 years, female, NA, stage:1, alive, 900 days
11.4
DO45199
86 years, female, NA, stage:2, alive, 1350 days
10.8
DO23521
63 years, male, NA, stage:3, alive, 1110 days
10.7
DO50818
65 years, male, NA, stage:2, alive, 510 days
10.7
DO50825
70 years, male, NA, stage:2, alive, 390 days
10.7
DO48695
77 years, male, NA, stage:2, alive, 720 days
10.6
DO50845
72 years, male, NA, stage:3, alive, 210 days
10.3
DO50840
49 years, male, NA, stage:2, alive, 330 days
10.3
DO50822
66 years, male, NA, stage:2, alive, 510 days
9.9
DO48719
80 years, male, NA, stage:2, alive, 690 days
9.8
DO23516
69 years, male, NA, stage:3, dead, 20 days
9.8
DO23512
60 years, male, NA, stage:1, alive, 1260 days
9.6
DO45255
81 years, male, NA, stage:3, alive, 720 days
9.4
DO50798
77 years, male, NA, stage:3, dead, 30 days
9.3
DO48761
55 years, male, NA, stage:2, alive, 870 days
9.2
DO48681
57 years, male, NA, stage:2, alive, 900 days
9.1
DO45117
73 years, female, NA, stage:2, dead, 1110 days
9.0
DO45101
63 years, male, NA, stage:2, alive, 1680 days
8.8
DO50859
77 years, male, NA, stage:2, alive, 180 days
8.7
DO48715
58 years, female, NA, stage:2, dead, 690 days
8.2
DO23509
60 years, male, NA, stage:3, dead, 780 days
7.9
DO45133
64 years, male, NA, stage:3, dead, 660 days
7.6
DO45125
58 years, male, NA, stage:3, alive, 1680 days
7.4
DO227643
79 years, male, NA, stage:2, alive, 1260 days
7.2
DO48727
81 years, female, NA, stage:2, dead, 390 days
7.2
DO45113
58 years, male, NA, stage:3, alive, 1560 days
7.0
DO45091
56 years, male, NA, stage:2, dead, 1320 days
6.8
DO48757
68 years, female, NA, stage:3, alive, 480 days
6.7
DO45107
63 years, female, NA, stage:2, alive, 1710 days
6.4
DO23542
66 years, male, NA, stage:3, alive, 960 days
6.4
DO50832
73 years, male, NA, stage:3, alive, 90 days
6.4
DO45237
58 years, male, NA, stage:2, alive, 900 days
6.3
DO45175
74 years, male, NA, stage:2, alive, 1140 days
6.3
DO23539
77 years, male, NA, stage:1, alive, 1110 days
6.2
DO50839
47 years, female, NA, stage:3, alive, 330 days
6.0
DO23540
73 years, male, NA, stage:1, alive, 750 days
6.0
DO50785
37 years, male, NA, stage:4, dead, 90 days
5.9
DO45173
63 years, male, NA, stage:3, alive, 1170 days
5.8
DO45097
69 years, male, NA, stage:3, alive, 1620 days
5.8
DO45115
81 years, male, NA, stage:2, alive, 840 days
5.7
DO23532
71 years, female, NA, stage:1, alive, 960 days
5.7
DO23517
62 years, male, NA, stage:2, alive, 1200 days
5.6
DO50857
72 years, male, NA, stage:2, alive, 210 days
5.4
DO50799
66 years, female, NA, stage:2, alive, 540 days
5.3
DO45169
74 years, male, NA, stage:3, alive, 1350 days
5.1
DO50783
62 years, male, NA, stage:3, alive, 480 days
4.9
DO48674
80 years, male, NA, stage:2, alive, 1260 days
4.8
DO48751
68 years, male, NA, stage:2, dead, 480 days
4.8
DO50814
83 years, male, NA, stage:3, alive, 420 days
4.6
DO48723
73 years, male, NA, stage:1, alive, 600 days
4.6
DO50815
62 years, male, NA, stage:3, alive, 150 days
4.5
DO45195
62 years, male, NA, stage:1, alive, 390 days
4.3
DO23508
79 years, female, NA, stage:2, alive, 390 days
4.1
DO45265
73 years, male, NA, stage:3, alive, 1020 days
4.0
DO48706
72 years, male, NA, stage:2, alive, 870 days
3.8
DO23533
61 years, male, NA, stage:2, alive, 900 days
3.7
DO23549
74 years, male, NA, stage:3, alive, 990 days
3.5
DO48746
76 years, male, NA, stage:3, alive, 570 days
3.3
DO45209
70 years, male, NA, stage:4, alive, 1350 days
3.3
DO45167
67 years, male, NA, stage:2, dead, 1440 days
2.9
DO50816
63 years, male, NA, stage:2, alive, 390 days
2.6
DO23534
60 years, male, NA, stage:2, alive, 840 days
2.6
DO50817
75 years, male, NA, stage:2, alive, 390 days
2.5
DO50811
62 years, male, NA, stage:1, alive, 450 days
2.3
DO50844
75 years, male, NA, stage:4, alive, 300 days
2.3
DO45145
78 years, male, NA, stage:3, dead, 60 days
2.3
DO45239
42 years, male, NA, stage:2, alive, 870 days
2.2
DO45131
53 years, male, NA, stage:4, dead, 360 days
2.0
DO45093
71 years, male, NA, stage:2, dead, 720 days
2.0
DO45163
76 years, male, NA, stage:2, alive, 960 days
1.4
DO45105
61 years, male, NA, stage:1, alive, 1680 days
1.4
DO45149
70 years, female, NA, stage:2, alive, 1260 days
1.1
DO48741
64 years, male, NA, stage:3, alive, 240 days
1.0
DO23513
76 years, male, NA, stage:3, alive, 1200 days
0.6
DO23511
83 years, female, NA, stage:3, dead, 180 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
917
Tumor
2.2
283
Tumor
2.0
975
Tumor
2.0
311
Tumor
1.7
943
Tumor
1.7
343
Tumor
1.6
817
Tumor
1.5
1028
Normal
1.5
963
Tumor
1.4
545
Tumor
1.4
192
Normal
1.4
956
Normal
1.4
355
Tumor
1.4
982
Normal
1.4
536
Normal
1.3
952
Normal
1.3
881
Tumor
1.3
1026
Normal
1.3
185
Tumor
1.3
492
Normal
1.2
984
Normal
1.2
1042
Normal
1.2
455
Tumor
1.1
1032
Normal
1.1
1014
Normal
1.1
813
Tumor
1.1
491
Tumor
1.1
421
Tumor
1.1
713
Tumor
1.1
857
Tumor
1.0
697
Tumor
1.0
958
Normal
1.0
823
Tumor
1.0
525
Tumor
1.0
976
Normal
1.0
1045
Tumor
1.0
386
Normal
1.0
916
Normal
1.0
461
Tumor
0.9
447
Tumor
0.9
1044
Normal
0.9
877
Tumor
0.8
921
Tumor
0.8
444
Normal
0.8
816
Normal
0.8
363
Tumor
0.7
918
Normal
0.7
1022
Normal
0.7
671
Tumor
0.7
535
Tumor
0.7
211
Tumor
0.7
744
Normal
0.7
141
Tumor
0.7
874
Normal
0.7
383
Tumor
0.7
981
Tumor
0.6
964
Normal
0.6
1015
Tumor
0.6
818
Normal
0.6
375
Tumor
0.6
297
Tumor
0.6
924
Normal
0.6
538
Normal
0.6
498
Normal
0.5
923
Tumor
0.5
785
Tumor
0.5
213
Tumor
0.5
268
Normal
0.5
223
Tumor
0.5
672
Normal
0.5
415
Tumor
0.5
912
Normal
0.5
814
Normal
0.5
563
Tumor
0.5
385
Tumor
0.5
515
Tumor
0.4
968
Normal
0.4
188
Normal
0.4
852
Normal
0.4
478
Normal
0.4
574
Normal
0.4
966
Normal
0.4
866
Normal
0.4
473
Tumor
0.4
954
Normal
0.4
493
Tumor
0.4
922
Normal
0.4
978
Normal
0.4
554
Normal
0.4
224
Normal
0.4
913
Tumor
0.4
434
Normal
0.4
195
Tumor
0.4
746
Normal
0.3
467
Tumor
0.3
546
Normal
0.3
145
Tumor
0.3
331
Tumor
0.3
1016
Normal
0.3
878
Normal
0.3
938
Normal
0.3
983
Tumor
0.3
647
Tumor
0.3
516
Normal
0.3
412
Normal
0.3
214
Normal
0.3
944
Normal
0.3
716
Normal
0.3
416
Normal
0.3
474
Normal
0.2
472
Normal
0.2
884
Normal
0.2
628
Normal
0.2
483
Tumor
0.2
742
Normal
0.2
867
Tumor
0.2
186
Normal
0.2
868
Normal
0.2
627
Tumor
0.2
395
Tumor
0.2
212
Normal
0.2
126
Normal
0.1
957
Tumor
0.1
914
Normal
0.1
277
Tumor
0.1
862
Normal
0.1
138
Normal
0.1
137
Tumor
0.1
497
Tumor
0.1
365
Tumor
0.1
146
Normal
0.1
191
Tumor
0.1
883
Tumor
0.1
553
Tumor
0.1
721
Tumor
0.1
366
Normal
0.1
518
Normal
0.1
864
Normal
0.1
953
Tumor
0.1
524
Normal
0.0
327
Tumor
0.0
364
Normal
0.0
328
Normal
0.0
965
Tumor
0.0
715
Tumor
0.0
738
Normal
0.0
284
Normal
0.0
925
Tumor
0.0
228
Normal
0.0
728
Normal
0.0
312
Normal
0.0
344
Normal
0.0
558
Normal
0.0
882
Normal
0.0
272
Normal
0.0
427
Tumor
0.0
368
Normal
0.0
124
Normal
-0.1
187
Tumor
-0.1
926
Normal
-0.1
433
Tumor
-0.1
642
Normal
-0.1
618
Normal
-0.1
824
Normal
-0.1
362
Normal
-0.1
1046
Normal
-0.1
261
Tumor
-0.1
161
Tumor
-0.1
778
Normal
-0.1
977
Tumor
-0.2
132
Normal
-0.2
354
Normal
-0.2
858
Normal
-0.2
136
Normal
-0.2
615
Tumor
-0.2
641
Tumor
-0.2
494
Normal
-0.2
422
Normal
-0.2
1041
Tumor
-0.2
696
Normal
-0.2
196
Normal
-0.2
722
Normal
-0.2
723
Tumor
-0.2
384
Normal
-0.2
636
Normal
-0.2
727
Tumor
-0.2
396
Normal
-0.3
564
Normal
-0.3
262
Normal
-0.3
1031
Tumor
-0.3
616
Normal
-0.3
142
Normal
-0.3
686
Normal
-0.3
428
Normal
-0.3
685
Tumor
-0.3
352
Normal
-0.3
353
Tumor
-0.3
863
Tumor
-0.3
526
Normal
-0.3
517
Tumor
-0.3
873
Tumor
-0.3
662
Normal
-0.4
915
Tumor
-0.4
464
Normal
-0.4
528
Normal
-0.4
286
Normal
-0.4
413
Tumor
-0.4
313
Tumor
-0.4
217
Tumor
-0.4
743
Tumor
-0.4
463
Tumor
-0.4
1025
Tumor
-0.4
424
Normal
-0.4
388
Normal
-0.4
527
Tumor
-0.4
298
Normal
-0.4
714
Normal
-0.5
488
Normal
-0.5
394
Normal
-0.5
341
Tumor
-0.5
937
Tumor
-0.5
1027
Tumor
-0.5
361
Tumor
-0.5
172
Normal
-0.5
342
Normal
-0.5
484
Normal
-0.5
468
Normal
-0.5
695
Tumor
-0.5
471
Tumor
-0.5
861
Tumor
-0.5
332
Normal
-0.5
664
Normal
-0.6
572
Normal
-0.6
356
Normal
-0.6
617
Tumor
-0.6
221
Tumor
-0.6
162
Normal
-0.6
786
Normal
-0.6
698
Normal
-0.6
436
Normal
-0.6
258
Normal
-0.6
218
Normal
-0.6
448
Normal
-0.6
376
Normal
-0.6
534
Normal
-0.6
114
Normal
-0.6
278
Normal
-0.6
431
Tumor
-0.6
414
Normal
-0.7
227
Tumor
-0.7
135
Tumor
-0.7
514
Normal
-0.7
568
Normal
-0.7
666
Normal
-0.7
456
Normal
-0.7
387
Tumor
-0.7
314
Normal
-0.7
741
Tumor
-0.7
462
Normal
-0.7
513
Tumor
-0.7
955
Tumor
-0.7
737
Tumor
-0.8
1043
Tumor
-0.8
477
Tumor
-0.8
127
Tumor
-0.8
358
Normal
-0.8
148
Normal
-0.8
232
Normal
-0.8
147
Tumor
-0.8
392
Normal
-0.8
777
Tumor
-0.8
815
Tumor
-0.8
573
Tumor
-0.8
452
Normal
-0.8
756
Normal
-0.8
367
Tumor
-0.8
665
Tumor
-0.8
271
Tumor
-0.8
426
Normal
-0.9
425
Tumor
-0.9
466
Normal
-0.9
111
Normal
-0.9
443
Tumor
-0.9
523
Tumor
-0.9
755
Tumor
-0.9
648
Normal
-0.9
131
Tumor
-0.9
745
Tumor
-0.9
446
Normal
-0.9
482
Normal
-0.9
557
Tumor
-1.0
967
Tumor
-1.0
951
Tumor
-1.0
435
Tumor
-1.0
533
Tumor
-1.0
1021
Tumor
-1.0
911
Tumor
-1.0
1013
Tumor
-1.0
537
Tumor
-1.0
851
Tumor
-1.0
423
Tumor
-1.0
432
Normal
-1.1
222
Normal
-1.1
481
Tumor
-1.1
231
Tumor
-1.1
487
Tumor
-1.1
357
Tumor
-1.1
128
Normal
-1.2
411
Tumor
-1.2
445
Tumor
-1.2
393
Tumor
-1.2
113
Tumor
-1.2
567
Tumor
-1.3
663
Tumor
-1.3
257
Tumor
-1.3
724
Normal
-1.4
451
Tumor
-1.4
865
Tumor
-1.4
465
Tumor
-1.5
391
Tumor
-1.5
351
Tumor
-1.5
171
Tumor
-1.5
267
Tumor
-1.5
285
Tumor
-1.5
635
Tumor
-1.6
661
Tumor
-1.7
125
Tumor
-1.7
571
Tumor
-1.7
112
Tumor
-1.8
123
Tumor
-2.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
