MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.2 nTPM
HPA Brain:13.5 nTPM
GTEx:7.2 nTPM
FANTOM5:36.9 Scaled Tags Per Million
Pig:9.2 nTPM
Mouse:13.0 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 13.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.7
2586 Male, age 75, left hemisphere 16.8
2666 Male, age 74, left hemisphere 15.3
2019 Male, age 18, unknown 13.8
1827 Male, age 72, unknown 13.2
2828 Female, age 72, unknown 12.6
1833 Male, age 53, unknown 11.8
2411 Female, age 72, unknown 11.4
1830 Male, age 51, unknown 11.2
1870 Female, age 42, unknown 11.1
2219 Male, age 76, both hemispheres 9.9
Dorsal raphe nucleus
nTPM: 10.8
1828 Male, age 53, unknown 11.4
2016 Female, age 72, unknown 11.4
2750 Male, age 76, both hemispheres 11.4
2298 Female, age 72, unknown 10.2
2047 Male, age 72, unknown 9.8
Inferior colliculus
nTPM: 11.6
1890 Male, age 53, unknown 12.1
2849 Male, age 72, unknown 11.9
1848 Female, age 42, unknown 11.8
2097 Female, age 72, unknown 10.5
Median raphe nucleus
nTPM: 12.8
2220 Male, age 76, midline 12.8
Periaquaductal grey, anterior
nTPM: 13.1
2502 Female, age 75, unknown 14.8
1795 Male, age 51, unknown 13.1
1947 Male, age 18, unknown 11.5
Periaquaductal grey, dorsal
nTPM: 11.5
1831 Male, age 72, unknown 12.7
2850 Male, age 76, both hemispheres 12.6
2464 Female, age 72, unknown 11.0
1840 Male, age 53, unknown 9.9
Periaquaductal grey, lateral
nTPM: 11.6
2053 Male, age 18, unknown 13.3
2272 Male, age 74, both hemispheres 10.8
2140 Male, age 76, both hemispheres 10.7
Pretectal area
nTPM: 13.2
1816 Male, age 51, unknown 15.6
1815 Male, age 53, unknown 14.7
2007 Male, age 72, unknown 14.5
2407 Male, age 75, both hemispheres 13.9
1817 Female, age 42, unknown 13.4
2667 Female, age 75, unknown 13.2
1944 Female, age 72, unknown 13.0
2316 Male, age 76, right hemisphere 12.0
2224 Female, age 72, unknown 11.5
2273 Male, age 74, both hemispheres 11.5
2825 Male, age 18, unknown 11.5
Red nucleus
nTPM: 13.1
2584 Male, age 75, left hemisphere 16.7
2588 Male, age 74, left hemisphere 14.8
2725 Female, age 75, unknown 14.3
2823 Male, age 76, right hemisphere 14.2
2785 Male, age 18, unknown 13.8
1865 Male, age 51, unknown 12.7
1954 Female, age 42, unknown 12.3
2769 Male, age 72, unknown 12.2
2503 Female, age 72, unknown 12.1
1821 Female, age 72, unknown 11.7
1904 Male, age 53, unknown 11.5
2227 Male, age 72, unknown 11.3
Substantia nigra
nTPM: 13.5
1889 Female, age 72, unknown 15.2
2665 Male, age 74, both hemispheres 15.1
1941 Male, age 53, unknown 14.5
1851 Male, age 51, unknown 14.0
1916 Female, age 42, unknown 13.9
2583 Male, age 75, right hemisphere 13.3
2699 Male, age 18, unknown 13.2
2241 Male, age 72, unknown 12.6
2590 Female, age 75, unknown 12.4
2409 Female, age 72, unknown 11.2
Superior colliculus
nTPM: 12.7
2664 Male, age 75, both hemispheres 14.9
1995 Male, age 72, unknown 14.1
2087 Female, age 72, unknown 13.4
1796 Male, age 53, unknown 12.9
2261 Male, age 18, unknown 12.5
1913 Female, age 42, unknown 12.4
2587 Male, age 74, left hemisphere 12.4
1895 Male, age 76, right hemisphere 11.7
1839 Male, age 51, unknown 11.4
2668 Female, age 75, unknown 10.9
Ventral tegmental area
nTPM: 12.5
1915 Female, age 42, unknown 12.9
1942 Male, age 51, unknown 12.9
2021 Male, age 53, unknown 12.8
2410 Female, age 72, unknown 12.5
2218 Male, age 76, both hemispheres 12.2
2223 Female, age 72, unknown 11.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 7.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.2
Samples: 139

Max nTPM: 14.2
Min nTPM: 3.4
Std nTPM: 1.6
Median nTPM: 7.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 14.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 11.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 11.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 11.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 11.1
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 10.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 10.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 10.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 10.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 9.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 9.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 36.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.9
FF:10158-103A5 76 years, female 36.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 9.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.7
Samples: 4

Max nTPM: 9.0
Min nTPM: 6.5
Sample A Female 6.5
Sample B Female 7.5
Sample C Male 7.8
Sample D Male 9.0
Midbrain
nTPM: 8.9
Samples: 4

Max nTPM: 10.2
Min nTPM: 7.7
Sample A Female 8.5
Sample B Female 7.7
Sample C Male 10.2
Sample D Male 9.3
Periaqueductal gray
nTPM: 7.6
Samples: 3

Max nTPM: 8.0
Min nTPM: 6.9
Sample B Female 8.0
Sample C Male 6.9
Sample D Male 7.9
Superior colliculi
nTPM: 9.2
Samples: 4

Max nTPM: 10.8
Min nTPM: 7.7
Sample A Female 7.7
Sample B Female 9.4
Sample C Male 10.8
Sample D Male 8.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 13.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.0
Samples: 4

Max nTPM: 13.8
Min nTPM: 12.5
Sample A Male 12.6
Sample B Male 13.8
Sample C Female 13.1
Sample D Female 12.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
70429363 Antisense, RP_050614_01_E06, Mouse strain C57BL/6J (56 days, male) 1.1

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