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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
30.7
nTPM
HPA Brain:
132.2
nTPM
GTEx:
30.7
nTPM
FANTOM5:
12.7
Scaled Tags Per Million
Pig:
54.1
nTPM
Mouse:
66.6
nTPM
Allen mouse:
6.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
132.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 77.6
2586
Male, age 75, left hemisphere
130.2
2219
Male, age 76, both hemispheres
101.5
2411
Female, age 72, unknown
86.0
1827
Male, age 72, unknown
84.7
2828
Female, age 72, unknown
71.1
1870
Female, age 42, unknown
70.6
1833
Male, age 53, unknown
64.8
1830
Male, age 51, unknown
60.0
2666
Male, age 74, left hemisphere
53.9
2019
Male, age 18, unknown
53.7
Dorsal raphe nucleus nTPM: 98.9
2298
Female, age 72, unknown
128.1
2047
Male, age 72, unknown
120.5
1828
Male, age 53, unknown
96.0
2750
Male, age 76, both hemispheres
87.1
2016
Female, age 72, unknown
62.7
Inferior colliculus nTPM: 98.0
2097
Female, age 72, unknown
114.6
2849
Male, age 72, unknown
106.1
1848
Female, age 42, unknown
88.9
1890
Male, age 53, unknown
82.3
Median raphe nucleus nTPM: 132.2
2220
Male, age 76, midline
132.2
Periaquaductal grey, anterior nTPM: 85.4
1795
Male, age 51, unknown
111.1
1947
Male, age 18, unknown
72.8
2502
Female, age 75, unknown
72.4
Periaquaductal grey, dorsal nTPM: 88.7
1840
Male, age 53, unknown
100.5
2850
Male, age 76, both hemispheres
94.3
2464
Female, age 72, unknown
91.4
1831
Male, age 72, unknown
68.7
Periaquaductal grey, lateral nTPM: 80.2
2053
Male, age 18, unknown
92.3
2140
Male, age 76, both hemispheres
89.0
2272
Male, age 74, both hemispheres
59.2
Pretectal area nTPM: 89.0
1816
Male, age 51, unknown
116.1
1944
Female, age 72, unknown
108.4
2667
Female, age 75, unknown
108.2
2825
Male, age 18, unknown
103.9
2224
Female, age 72, unknown
99.3
2007
Male, age 72, unknown
97.3
1817
Female, age 42, unknown
87.2
1815
Male, age 53, unknown
71.3
2316
Male, age 76, right hemisphere
70.5
2407
Male, age 75, both hemispheres
60.2
2273
Male, age 74, both hemispheres
56.4
Red nucleus nTPM: 47.3
2725
Female, age 75, unknown
102.0
2584
Male, age 75, left hemisphere
86.2
2785
Male, age 18, unknown
50.5
2588
Male, age 74, left hemisphere
44.3
2769
Male, age 72, unknown
43.0
2823
Male, age 76, right hemisphere
42.9
2227
Male, age 72, unknown
42.0
1821
Female, age 72, unknown
36.7
1954
Female, age 42, unknown
35.6
2503
Female, age 72, unknown
33.4
1865
Male, age 51, unknown
28.0
1904
Male, age 53, unknown
22.8
Substantia nigra nTPM: 67.0
1941
Male, age 53, unknown
124.0
2665
Male, age 74, both hemispheres
90.0
1889
Female, age 72, unknown
81.8
2241
Male, age 72, unknown
59.7
1916
Female, age 42, unknown
58.9
2590
Female, age 75, unknown
58.8
1851
Male, age 51, unknown
55.3
2583
Male, age 75, right hemisphere
54.6
2699
Male, age 18, unknown
45.7
2409
Female, age 72, unknown
41.2
Superior colliculus nTPM: 79.0
1796
Male, age 53, unknown
108.3
2261
Male, age 18, unknown
101.4
2087
Female, age 72, unknown
97.3
2664
Male, age 75, both hemispheres
94.2
1839
Male, age 51, unknown
91.4
1895
Male, age 76, right hemisphere
82.5
2587
Male, age 74, left hemisphere
64.1
1995
Male, age 72, unknown
60.4
1913
Female, age 42, unknown
58.8
2668
Female, age 75, unknown
31.6
Ventral tegmental area nTPM: 82.1
2223
Female, age 72, unknown
126.5
1942
Male, age 51, unknown
80.3
2218
Male, age 76, both hemispheres
78.8
2021
Male, age 53, unknown
76.3
1915
Female, age 42, unknown
71.1
2410
Female, age 72, unknown
59.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
30.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 30.7
Samples: 139
Max nTPM: 224.7
Min nTPM: 2.9
Std nTPM: 23.9
Median nTPM: 27.0
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
224.7
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
125.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
110.6
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
87.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
61.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
60.2
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
58.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
52.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
52.4
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
51.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
50.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
50.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
47.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
46.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
46.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
45.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
45.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
45.1
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
44.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
44.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
43.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
43.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
43.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
43.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
42.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
42.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
42.0
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
41.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
41.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
40.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
40.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
39.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
39.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
39.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
39.3
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
37.1
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
36.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
36.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
36.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
34.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
34.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
34.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
34.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
34.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
33.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
32.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
32.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
32.8
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
32.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
32.6
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
32.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
32.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
32.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
31.2
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
30.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
30.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
30.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
30.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
29.9
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
29.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
29.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
29.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
29.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
28.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
28.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
28.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
27.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
27.5
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
27.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
27.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
26.1
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
26.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
25.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
25.3
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
25.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
24.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
24.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
24.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
24.5
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
24.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
24.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
23.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
23.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
23.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
22.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
22.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
21.8
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
21.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
21.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
21.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
20.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
20.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
20.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
20.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
20.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
20.6
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
20.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
20.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
19.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
19.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
19.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
19.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
19.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
18.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
18.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
17.7
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
17.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
17.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
16.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
15.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
15.8
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
15.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
15.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
15.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
14.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
14.4
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
14.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
14.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
13.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
13.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
13.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
12.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
12.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
12.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
12.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
12.1
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
11.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
11.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
10.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
10.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
10.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
9.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
8.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
8.4
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
8.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
6.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
4.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
4.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
2.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
66.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 66.6
Samples: 4
Max nTPM: 72.5
Min nTPM: 62.2
Sample A
Male
72.5
Sample B
Male
64.3
Sample C
Female
67.2
Sample D
Female
62.2
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.