We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
175.6
nTPM
HPA Brain:
543.6
nTPM
GTEx:
175.6
nTPM
FANTOM5:
405.6
Scaled Tags Per Million
Pig:
387.6
nTPM
Mouse:
324.2
nTPM
Allen mouse:
18.9
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA069318
Glial cells
Low
Neuronal cells
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
543.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 384.4
2148
Female, age 91, left hemisphere
501.9
2621
Female, age 67, right hemisphere
479.0
1898
Male, age 80, left hemisphere
410.6
1911
Female, age 85, right hemisphere
339.6
2529
Female, age 94, left hemisphere
288.2
1855
Male, age 76, left hemisphere
287.3
Dentate gyrus nTPM: 435.5
2531
Female, age 67, both hemispheres
639.4
1927
Female, age 91, both hemispheres
564.2
2528
Male, age 74, both hemispheres
403.5
2530
Female, age 94, left hemisphere
372.2
2246
Female, age 85, both hemispheres
360.9
2010
Male, age 76, both hemispheres
272.7
Entorhinal gyrus nTPM: 327.0
2613
Female, age 94, left hemisphere
447.4
2764
Male, age 80, right hemisphere
393.1
1938
Female, age 85, left hemisphere
346.3
2686
Male, age 75, right hemisphere
279.0
1787
Male, age 76, left hemisphere
276.0
2117
Female, age 91, right hemisphere
220.2
Hippocampus, CA1 nTPM: 461.6
2749
Male, age 80, left hemisphere
793.1
2082
Female, age 91, right hemisphere
429.3
1873
Female, age 85, both hemispheres
379.8
2527
Male, age 74, both hemispheres
355.7
2045
Male, age 76, both hemispheres
349.9
Hippocampus, CA2 nTPM: 349.0
2113
Female, age 91, right hemisphere
402.1
1963
Male, age 80, left hemisphere
389.2
1892
Male, age 76, both hemispheres
351.9
2437
Female, age 94, left hemisphere
327.5
2249
Male, age 74, both hemispheres
314.5
1940
Female, age 85, left hemisphere
308.9
Hippocampus, CA3 nTPM: 543.6
2620
Female, age 94, left hemisphere
1024.0
2137
Male, age 80, left hemisphere
753.8
2861
Female, age 67, both hemispheres
617.0
2436
Male, age 74, both hemispheres
319.0
1867
Male, age 76, both hemispheres
298.5
1891
Female, age 85, both hemispheres
249.4
Parahippocampal cortex nTPM: 347.9
2245
Female, age 91, both hemispheres
529.1
2693
Female, age 94, both hemispheres
391.1
2622
Female, age 67, right hemisphere
386.2
1850
Male, age 80, both hemispheres
370.1
2250
Female, age 67, right hemisphere
348.1
1990
Female, age 91, right hemisphere
338.1
1933
Female, age 85, both hemispheres
325.3
2532
Female, age 72, left hemisphere
314.9
2692
Male, age 74, both hemispheres
245.4
2018
Male, age 76, both hemispheres
230.4
Perirhinal gyrus nTPM: 410.5
1847
Female, age 91, left hemisphere
506.3
1794
Male, age 80, right hemisphere
462.2
2521
Female, age 94, right hemisphere
430.8
1841
Female, age 85, right hemisphere
385.9
2848
Male, age 76, right hemisphere
267.3
Subiculum nTPM: 274.5
1901
Male, age 80, both hemispheres
354.7
2729
Female, age 91, right hemisphere
332.9
1977
Female, age 85, both hemispheres
297.6
2619
Male, age 74, both hemispheres
240.9
2042
Male, age 76, both hemispheres
211.7
2438
Female, age 94, left hemisphere
208.9
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
175.6
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 175.6
Samples: 197
Max nTPM: 505.0
Min nTPM: 4.8
Std nTPM: 112.5
Median nTPM: 167.4
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
505.0
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
474.7
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
459.2
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
454.6
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
433.9
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
433.7
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
406.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
405.5
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
399.3
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
398.1
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
386.3
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
374.7
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
371.7
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
361.5
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
353.6
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
341.0
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
337.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
336.7
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
327.4
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
324.4
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
321.4
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
320.2
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
314.0
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
311.2
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
309.2
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
302.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
301.9
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
301.2
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
297.0
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
295.8
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
294.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
293.4
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
292.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
291.7
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
284.0
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
275.4
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
275.4
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
271.8
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
267.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
264.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
263.2
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
260.3
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
258.6
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
258.3
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
257.9
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
256.7
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
256.5
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
255.5
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
252.9
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
248.5
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
247.7
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
243.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
242.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
242.5
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
235.7
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
233.1
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
231.2
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
229.0
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
228.3
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
228.0
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
227.3
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
224.9
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
224.7
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
224.5
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
222.1
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
221.5
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
219.9
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
218.5
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
216.3
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
214.0
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
213.8
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
213.3
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
212.6
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
210.3
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
208.4
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
205.0
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
202.9
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
201.4
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
200.4
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
200.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
197.7
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
194.8
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
189.1
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
188.4
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
187.8
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
186.7
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
186.6
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
184.5
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
184.3
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
183.9
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
182.1
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
181.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
178.8
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
178.2
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
176.8
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
176.4
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
175.5
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
168.7
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
167.4
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
167.0
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
164.5
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
163.6
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
162.6
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
161.3
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
160.6
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
159.2
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
156.9
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
156.7
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
154.9
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
150.7
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
150.3
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
145.1
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
143.2
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
140.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
140.2
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
139.3
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
139.1
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
139.0
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
136.3
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
135.7
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
134.8
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
127.4
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
119.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
118.3
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
117.4
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
116.6
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
113.9
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
113.6
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
109.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
108.1
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
105.8
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
105.1
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
104.2
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
104.0
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
103.7
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
102.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
102.4
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
100.3
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
98.2
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
96.6
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
95.8
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
92.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
88.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
87.1
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
86.1
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
84.0
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
83.3
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
82.3
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
81.2
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
79.5
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
79.3
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
78.8
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
78.2
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
75.0
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
71.5
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
69.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
69.5
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
67.2
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
67.1
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
66.5
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
66.3
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
64.2
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
58.5
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
58.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
55.6
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
55.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
50.4
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
49.1
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
47.8
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
45.3
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
43.8
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
43.6
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
39.9
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
38.0
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
36.6
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
35.6
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
34.9
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
32.5
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
31.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
30.2
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
28.9
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
23.0
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
22.2
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
22.1
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
20.9
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
18.5
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
18.4
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
16.7
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
15.2
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
13.5
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
13.1
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
13.1
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
12.9
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
12.1
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
11.3
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
5.7
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
4.8
Show allShow less
HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
324.2
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 293.5
Samples: 4
Max nTPM: 333.5
Min nTPM: 278.4
Sample A
Male
278.4
Sample B
Male
279.9
Sample C
Female
282.1
Sample D
Female
333.5
Hippocampal formation nTPM: 324.2
Samples: 4
Max nTPM: 362.5
Min nTPM: 287.0
Sample A
Male
287.0
Sample B
Male
349.0
Sample C
Female
362.5
Sample D
Female
298.2
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.