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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MFSD2A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
302.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
221.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
188.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
173.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
165.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
160.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
147.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
132.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
126.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
126.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
125.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
122.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
114.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
106.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
101.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
101.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
100.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
100.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
98.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
98.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
97.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
97.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
97.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
97.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
97.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
96.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
96.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
91.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
89.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
88.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
82.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
77.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
70.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
68.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
68.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
68.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
68.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
65.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
65.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
64.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
62.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
60.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
59.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
57.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
57.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
56.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
54.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
52.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
51.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
48.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
48.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
46.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
45.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
43.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
41.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
40.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
40.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
40.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
38.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
38.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
36.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
35.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
34.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
34.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
33.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
31.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
30.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
30.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
29.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
29.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
29.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
28.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
27.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
27.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
27.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
26.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
26.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
25.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
22.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
22.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
22.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
22.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
21.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
21.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
20.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
19.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
18.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
18.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
17.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
17.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
16.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
16.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
15.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
13.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
13.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
7.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
5.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
2.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
2.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
2.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
2.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
2.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
2.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
1.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
1.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
1.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MFSD2A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.9
Number of samples
231
Samples
Sample
Description
TPM
DO45237
0 years, male, NA, stage:2, alive, 900 days
233.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
200.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
179.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
174.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
165.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
147.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
133.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
113.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
106.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
103.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
99.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
92.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
90.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
90.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
84.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
80.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
75.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
73.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
72.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
67.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
66.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
65.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
63.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
63.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
63.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
58.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
55.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
53.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
50.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
50.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
44.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
43.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
42.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
42.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
41.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
41.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
38.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
36.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
35.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
31.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
27.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
27.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
26.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
25.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
25.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
24.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
24.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
24.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
22.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
21.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
21.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
21.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
19.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
17.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
4.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
3.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
2.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
2.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
2.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
2.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
2.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
2.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
2.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
2.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
2.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
1.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
1.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
1.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
1.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
1.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
1.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
1.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
1.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
1.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
1.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
1.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
1.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
1.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
955
Tumor
1.9
615
Tumor
1.8
481
Tumor
1.7
755
Tumor
1.6
642
Normal
1.5
365
Tumor
1.3
956
Normal
1.2
554
Normal
1.2
268
Normal
1.2
914
Normal
1.1
616
Normal
1.1
498
Normal
1.1
785
Tumor
1.0
778
Normal
1.0
981
Tumor
1.0
953
Tumor
1.0
494
Normal
1.0
416
Normal
0.9
262
Normal
0.9
218
Normal
0.8
474
Normal
0.8
952
Normal
0.8
978
Normal
0.7
722
Normal
0.7
746
Normal
0.7
357
Tumor
0.6
368
Normal
0.6
777
Tumor
0.6
488
Normal
0.5
195
Tumor
0.5
627
Tumor
0.5
328
Normal
0.5
272
Normal
0.5
938
Normal
0.5
528
Normal
0.5
884
Normal
0.5
222
Normal
0.5
327
Tumor
0.5
943
Tumor
0.5
145
Tumor
0.5
196
Normal
0.5
636
Normal
0.5
628
Normal
0.4
353
Tumor
0.4
954
Normal
0.4
944
Normal
0.4
714
Normal
0.4
138
Normal
0.4
696
Normal
0.4
258
Normal
0.4
492
Normal
0.3
982
Normal
0.3
214
Normal
0.3
546
Normal
0.3
412
Normal
0.3
538
Normal
0.3
383
Tumor
0.3
356
Normal
0.3
136
Normal
0.3
141
Tumor
0.3
882
Normal
0.3
716
Normal
0.3
362
Normal
0.3
342
Normal
0.3
132
Normal
0.3
534
Normal
0.3
415
Tumor
0.3
217
Tumor
0.2
786
Normal
0.2
137
Tumor
0.2
1016
Normal
0.2
462
Normal
0.2
142
Normal
0.2
344
Normal
0.1
364
Normal
0.1
261
Tumor
0.1
484
Normal
0.1
472
Normal
0.1
618
Normal
0.0
756
Normal
0.0
1015
Tumor
0.0
146
Normal
0.0
491
Tumor
0.0
482
Normal
0.0
358
Normal
-0.1
232
Normal
-0.1
366
Normal
-0.1
493
Tumor
-0.1
192
Normal
-0.1
341
Tumor
-0.1
951
Tumor
-0.1
478
Normal
-0.1
191
Tumor
-0.1
384
Normal
-0.2
553
Tumor
-0.2
351
Tumor
-0.2
686
Normal
-0.2
361
Tumor
-0.2
813
Tumor
-0.2
352
Normal
-0.2
545
Tumor
-0.2
814
Normal
-0.2
878
Normal
-0.2
984
Normal
-0.2
487
Tumor
-0.2
912
Normal
-0.3
131
Tumor
-0.3
1014
Normal
-0.3
354
Normal
-0.3
221
Tumor
-0.3
367
Tumor
-0.3
343
Tumor
-0.3
937
Tumor
-0.4
537
Tumor
-0.4
877
Tumor
-0.4
745
Tumor
-0.5
355
Tumor
-0.5
135
Tumor
-0.5
473
Tumor
-0.5
497
Tumor
-0.5
635
Tumor
-0.5
411
Tumor
-0.5
533
Tumor
-0.5
375
Tumor
-0.6
213
Tumor
-0.6
376
Normal
-0.6
527
Tumor
-0.6
721
Tumor
-0.6
483
Tumor
-0.7
267
Tumor
-0.7
231
Tumor
-0.8
257
Tumor
-0.8
363
Tumor
-0.8
695
Tumor
-0.8
641
Tumor
-0.8
477
Tumor
-0.8
1013
Tumor
-0.9
977
Tumor
-0.9
913
Tumor
-0.9
685
Tumor
-1.0
881
Tumor
-1.0
461
Tumor
-1.0
271
Tumor
-1.0
983
Tumor
-1.0
911
Tumor
-1.1
883
Tumor
-1.1
715
Tumor
-1.1
713
Tumor
-1.2
471
Tumor
-1.5
617
Tumor
-1.9
111
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
114
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
817
Tumor
N/A
818
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
387
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
823
Tumor
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
957
Tumor
N/A
958
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
963
Tumor
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
857
Tumor
N/A
737
Tumor
N/A
858
Normal
N/A
738
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
861
Tumor
N/A
741
Tumor
N/A
862
Normal
N/A
742
Normal
N/A
863
Tumor
N/A
1046
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
1045
Tumor
N/A
744
Normal
N/A
865
Tumor
N/A
866
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
514
Normal
N/A
515
Tumor
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
535
Tumor
N/A
536
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
423
Tumor
N/A
665
Tumor
N/A
424
Normal
N/A
666
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
312
Normal
N/A
433
Tumor
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
447
Tumor
N/A
568
Normal
N/A
448
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
452
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
212
Normal
N/A
455
Tumor
N/A
697
Tumor
N/A
456
Normal
N/A
698
Normal
N/A
463
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
