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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PCMTD1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
29.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
29.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
28.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
25.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
23.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
23.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
23.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
23.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
22.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
22.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
22.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
20.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
20.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
20.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
19.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
18.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
18.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
18.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
17.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
17.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
16.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
16.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
16.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
16.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
14.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
13.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
5.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PCMTD1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.8
Number of samples
231
Samples
Sample
Description
TPM
DO45251
0 years, female, NA, stage:2, alive, 900 days
51.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
43.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
35.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
33.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
29.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
28.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
27.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
26.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
26.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
25.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
25.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
25.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
25.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
25.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
24.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
24.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
23.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
23.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
23.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
23.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
23.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
23.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
23.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
22.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
22.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
22.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
22.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
21.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
21.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
21.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
20.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
20.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
20.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
20.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
20.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
20.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
19.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
18.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
18.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
18.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
18.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
18.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
17.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
715
Tumor
1.2
427
Tumor
0.9
557
Tumor
0.8
685
Tumor
0.8
353
Tumor
0.7
618
Normal
0.7
342
Normal
0.7
231
Tumor
0.7
818
Normal
0.6
862
Normal
0.6
1022
Normal
0.6
298
Normal
0.6
723
Tumor
0.6
616
Normal
0.5
746
Normal
0.5
436
Normal
0.5
778
Normal
0.5
222
Normal
0.5
482
Normal
0.5
858
Normal
0.5
196
Normal
0.5
824
Normal
0.5
111
Normal
0.5
664
Normal
0.5
412
Normal
0.5
914
Normal
0.5
448
Normal
0.5
955
Tumor
0.5
952
Normal
0.4
341
Tumor
0.4
636
Normal
0.4
1032
Normal
0.4
428
Normal
0.4
956
Normal
0.4
314
Normal
0.4
756
Normal
0.4
925
Tumor
0.4
426
Normal
0.4
742
Normal
0.4
472
Normal
0.4
924
Normal
0.4
376
Normal
0.4
414
Normal
0.4
113
Tumor
0.4
191
Tumor
0.4
456
Normal
0.4
114
Normal
0.4
878
Normal
0.4
642
Normal
0.4
572
Normal
0.4
861
Tumor
0.4
1026
Normal
0.4
866
Normal
0.4
1016
Normal
0.4
867
Tumor
0.4
944
Normal
0.3
424
Normal
0.3
1042
Normal
0.3
744
Normal
0.3
716
Normal
0.3
882
Normal
0.3
332
Normal
0.3
471
Tumor
0.3
696
Normal
0.3
874
Normal
0.3
738
Normal
0.3
714
Normal
0.3
1044
Normal
0.3
366
Normal
0.3
786
Normal
0.3
722
Normal
0.3
286
Normal
0.3
358
Normal
0.3
686
Normal
0.3
452
Normal
0.3
628
Normal
0.3
546
Normal
0.3
864
Normal
0.3
981
Tumor
0.3
823
Tumor
0.3
126
Normal
0.3
954
Normal
0.3
386
Normal
0.3
462
Normal
0.3
982
Normal
0.3
148
Normal
0.3
816
Normal
0.3
984
Normal
0.3
278
Normal
0.3
868
Normal
0.2
396
Normal
0.2
938
Normal
0.2
446
Normal
0.2
214
Normal
0.2
354
Normal
0.2
422
Normal
0.2
474
Normal
0.2
698
Normal
0.2
728
Normal
0.2
128
Normal
0.2
224
Normal
0.2
978
Normal
0.2
1046
Normal
0.2
284
Normal
0.2
468
Normal
0.2
162
Normal
0.2
394
Normal
0.2
466
Normal
0.2
662
Normal
0.2
228
Normal
0.2
857
Tumor
0.2
1043
Tumor
0.2
356
Normal
0.2
146
Normal
0.2
966
Normal
0.2
132
Normal
0.2
666
Normal
0.2
367
Tumor
0.2
388
Normal
0.2
648
Normal
0.2
364
Normal
0.2
212
Normal
0.2
186
Normal
0.2
665
Tumor
0.2
518
Normal
0.2
451
Tumor
0.2
136
Normal
0.2
352
Normal
0.1
362
Normal
0.1
464
Normal
0.1
538
Normal
0.1
558
Normal
0.1
1014
Normal
0.1
312
Normal
0.1
484
Normal
0.1
218
Normal
0.1
852
Normal
0.1
434
Normal
0.1
344
Normal
0.1
384
Normal
0.1
917
Tumor
0.1
432
Normal
0.1
526
Normal
0.1
911
Tumor
0.1
392
Normal
0.1
922
Normal
0.1
423
Tumor
0.1
147
Tumor
0.1
672
Normal
0.1
641
Tumor
0.1
416
Normal
0.1
745
Tumor
0.1
461
Tumor
0.1
964
Normal
0.1
915
Tumor
0.1
926
Normal
0.1
1028
Normal
0.1
328
Normal
0.1
516
Normal
0.1
363
Tumor
0.0
554
Normal
0.0
568
Normal
0.0
564
Normal
0.0
192
Normal
0.0
697
Tumor
0.0
188
Normal
0.0
976
Normal
0.0
127
Tumor
0.0
232
Normal
0.0
172
Normal
0.0
975
Tumor
0.0
258
Normal
0.0
368
Normal
0.0
221
Tumor
0.0
187
Tumor
0.0
261
Tumor
0.0
444
Normal
0.0
142
Normal
0.0
272
Normal
0.0
533
Tumor
0.0
145
Tumor
-0.1
912
Normal
-0.1
968
Normal
-0.1
534
Normal
-0.1
425
Tumor
-0.1
515
Tumor
-0.1
884
Normal
-0.1
863
Tumor
-0.1
514
Normal
-0.1
415
Tumor
-0.1
574
Normal
-0.1
138
Normal
-0.1
527
Tumor
-0.1
494
Normal
-0.1
383
Tumor
-0.1
473
Tumor
-0.1
375
Tumor
-0.1
918
Normal
-0.1
268
Normal
-0.1
617
Tumor
-0.1
488
Normal
-0.1
262
Normal
-0.1
1027
Tumor
-0.1
663
Tumor
-0.1
387
Tumor
-0.1
112
Tumor
-0.2
563
Tumor
-0.2
124
Normal
-0.2
478
Normal
-0.2
958
Normal
-0.2
963
Tumor
-0.2
327
Tumor
-0.2
627
Tumor
-0.2
497
Tumor
-0.2
873
Tumor
-0.2
421
Tumor
-0.2
916
Normal
-0.2
977
Tumor
-0.2
713
Tumor
-0.2
1041
Tumor
-0.2
477
Tumor
-0.2
487
Tumor
-0.2
223
Tumor
-0.2
313
Tumor
-0.3
528
Normal
-0.3
913
Tumor
-0.3
393
Tumor
-0.3
465
Tumor
-0.3
498
Normal
-0.3
481
Tumor
-0.3
137
Tumor
-0.3
283
Tumor
-0.3
361
Tumor
-0.3
724
Normal
-0.3
443
Tumor
-0.3
343
Tumor
-0.3
395
Tumor
-0.3
211
Tumor
-0.4
1021
Tumor
-0.4
785
Tumor
-0.4
195
Tumor
-0.4
883
Tumor
-0.4
311
Tumor
-0.4
467
Tumor
-0.4
435
Tumor
-0.4
455
Tumor
-0.4
492
Normal
-0.4
553
Tumor
-0.4
431
Tumor
-0.4
877
Tumor
-0.4
161
Tumor
-0.4
537
Tumor
-0.4
1025
Tumor
-0.4
131
Tumor
-0.4
721
Tumor
-0.4
297
Tumor
-0.4
814
Normal
-0.4
517
Tumor
-0.4
571
Tumor
-0.4
525
Tumor
-0.4
391
Tumor
-0.4
755
Tumor
-0.5
743
Tumor
-0.5
227
Tumor
-0.5
1031
Tumor
-0.5
365
Tumor
-0.5
433
Tumor
-0.5
491
Tumor
-0.5
881
Tumor
-0.5
943
Tumor
-0.5
351
Tumor
-0.5
217
Tumor
-0.5
865
Tumor
-0.5
813
Tumor
-0.5
141
Tumor
-0.5
1015
Tumor
-0.5
524
Normal
-0.5
277
Tumor
-0.5
937
Tumor
-0.6
567
Tumor
-0.6
355
Tumor
-0.6
493
Tumor
-0.6
213
Tumor
-0.6
271
Tumor
-0.6
536
Normal
-0.6
411
Tumor
-0.6
965
Tumor
-0.6
777
Tumor
-0.7
635
Tumor
-0.7
357
Tumor
-0.7
741
Tumor
-0.7
185
Tumor
-0.7
1013
Tumor
-0.7
957
Tumor
-0.7
1045
Tumor
-0.7
513
Tumor
-0.7
967
Tumor
-0.7
385
Tumor
-0.7
447
Tumor
-0.7
123
Tumor
-0.7
285
Tumor
-0.8
615
Tumor
-0.8
545
Tumor
-0.8
851
Tumor
-0.8
257
Tumor
-0.8
267
Tumor
-0.8
647
Tumor
-0.8
413
Tumor
-0.8
817
Tumor
-0.9
727
Tumor
-0.9
135
Tumor
-0.9
331
Tumor
-0.9
535
Tumor
-0.9
661
Tumor
-1.0
737
Tumor
-1.0
951
Tumor
-1.0
921
Tumor
-1.0
671
Tumor
-1.0
983
Tumor
-1.0
923
Tumor
-1.0
815
Tumor
-1.1
695
Tumor
-1.1
463
Tumor
-1.1
445
Tumor
-1.1
573
Tumor
-1.1
171
Tumor
-1.1
523
Tumor
-1.2
953
Tumor
-1.2
483
Tumor
-1.2
125
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
