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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IRF2BP2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
41.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
175.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
147.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
138.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
126.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
125.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
115.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
110.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
109.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
106.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
106.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
104.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
97.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
92.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
87.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
85.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
84.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
84.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
83.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
81.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
80.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
78.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
77.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
77.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
76.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
75.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
75.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
75.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
74.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
74.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
74.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
74.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
70.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
70.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
69.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
69.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
69.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
69.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
69.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
68.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
68.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
67.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
67.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
67.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
67.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
66.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
66.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
66.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
65.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
64.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
64.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
64.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
64.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
62.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
61.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
61.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
61.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
61.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
60.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
60.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
60.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
59.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
59.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
58.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
58.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
58.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
58.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
58.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
57.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
57.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
57.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
57.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
57.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
57.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
56.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
56.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
55.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
55.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
55.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
54.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
54.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
53.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
53.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
53.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
53.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
52.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
52.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
52.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
52.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
52.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
52.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
51.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
51.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
51.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
51.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
51.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
50.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
50.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
50.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
50.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
50.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
50.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
50.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
50.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
49.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
49.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
48.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
48.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
48.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
48.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
48.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
48.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
48.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
48.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
48.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
48.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
47.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
47.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
47.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
47.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
46.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
46.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
46.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
46.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
45.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
45.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
44.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
44.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
44.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
43.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
43.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
43.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
43.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
43.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
43.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
43.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
42.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
42.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
42.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
42.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
42.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
42.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
42.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
41.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
41.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
41.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
40.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
40.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
40.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
40.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
39.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
39.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
39.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
39.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
39.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
39.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
39.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
39.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
39.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
39.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
38.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
38.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
38.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
38.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
38.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
37.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
37.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
37.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
37.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
37.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
37.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
37.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
37.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
37.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
36.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
36.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
36.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
36.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
36.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
36.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
35.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
35.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
35.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
35.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
35.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
35.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
35.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
35.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
35.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
35.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
34.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
34.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
34.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
34.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
34.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
34.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
34.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
34.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
34.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
34.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
34.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
33.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
33.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
33.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
33.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
33.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
33.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
33.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
33.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
33.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
33.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
32.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
32.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
32.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
32.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
31.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
31.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
31.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
31.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
31.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
31.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
31.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
31.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
31.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
31.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
31.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
31.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
31.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
30.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
30.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
30.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
30.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
30.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
30.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
30.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
30.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
30.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
30.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
29.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
29.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
29.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
29.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
29.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
29.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
29.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
29.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
29.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
29.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
29.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
28.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
28.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
28.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
28.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
28.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
28.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
27.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
27.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
27.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
27.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
27.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
27.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
27.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
27.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
27.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
27.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
27.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
26.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
26.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
26.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
26.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
26.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
26.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
26.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
26.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
26.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
26.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
26.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
26.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
26.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
26.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
25.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
25.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
25.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
25.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
25.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
25.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
25.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
24.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
24.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
24.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
24.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
24.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
24.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
24.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
24.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
23.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
23.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
23.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
23.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
23.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
23.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
22.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
22.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
22.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
22.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
22.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
22.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
21.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
21.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
21.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
21.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
20.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
20.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
20.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
20.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
20.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
20.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
20.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
20.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
19.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
19.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
19.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
19.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
18.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
18.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
18.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
17.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
16.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
16.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
16.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
16.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
16.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
13.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IRF2BP2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
57.0
Number of samples
231
Samples
Sample
Description
TPM
DO23516
0 years, male, NA, stage:3, dead, 20 days
179.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
152.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
151.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
133.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
133.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
130.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
122.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
122.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
121.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
121.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
108.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
106.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
105.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
103.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
101.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
101.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
99.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
99.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
99.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
94.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
92.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
91.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
90.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
90.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
89.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
89.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
88.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
87.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
86.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
84.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
84.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
83.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
83.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
83.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
81.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
81.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
80.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
79.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
77.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
75.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
75.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
74.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
74.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
73.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
73.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
73.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
73.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
72.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
70.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
70.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
70.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
69.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
69.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
69.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
69.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
68.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
67.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
67.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
67.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
67.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
67.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
67.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
67.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
66.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
65.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
65.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
65.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
64.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
64.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
64.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
64.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
63.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
63.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
63.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
63.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
62.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
62.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
61.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
61.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
60.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
59.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
59.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
59.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
58.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
58.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
57.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
57.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
57.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
56.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
56.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
56.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
56.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
55.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
55.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
55.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
55.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
54.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
54.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
54.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
54.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
53.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
53.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
53.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
53.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
53.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
53.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
53.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
53.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
52.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
52.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
52.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
52.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
52.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
52.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
51.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
51.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
51.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
51.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
51.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
50.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
50.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
50.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
49.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
49.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
49.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
48.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
48.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
48.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
48.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
47.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
47.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
47.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
47.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
47.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
46.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
46.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
46.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
46.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
46.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
46.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
45.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
45.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
45.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
45.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
45.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
45.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
45.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
44.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
44.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
44.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
44.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
43.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
43.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
43.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
43.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
43.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
42.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
42.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
42.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
41.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
41.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
41.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
41.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
41.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
41.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
41.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
40.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
40.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
39.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
39.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
39.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
39.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
39.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
39.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
39.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
39.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
38.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
38.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
38.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
38.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
38.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
37.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
37.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
37.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
37.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
37.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
36.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
36.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
36.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
36.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
36.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
35.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
34.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
34.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
34.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
34.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
34.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
34.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
33.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
33.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
33.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
33.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
32.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
32.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
31.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
31.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
31.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
31.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
31.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
31.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
30.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
30.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
28.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
28.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
27.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
27.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
26.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
26.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
25.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
25.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
24.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
23.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
23.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
23.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
23.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
22.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
21.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
20.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
20.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
17.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
2.3
1031
Tumor
1.9
951
Tumor
1.8
975
Tumor
1.6
131
Tumor
1.6
221
Tumor
1.6
715
Tumor
1.5
881
Tumor
1.4
817
Tumor
1.4
977
Tumor
1.2
877
Tumor
1.2
921
Tumor
1.2
641
Tumor
1.2
671
Tumor
1.2
1025
Tumor
1.2
473
Tumor
1.2
865
Tumor
1.1
271
Tumor
1.1
385
Tumor
1.1
967
Tumor
1.0
231
Tumor
1.0
277
Tumor
1.0
553
Tumor
1.0
813
Tumor
1.0
471
Tumor
1.0
823
Tumor
0.9
425
Tumor
0.9
1021
Tumor
0.9
527
Tumor
0.9
497
Tumor
0.8
447
Tumor
0.8
737
Tumor
0.8
227
Tumor
0.8
411
Tumor
0.8
635
Tumor
0.7
523
Tumor
0.7
443
Tumor
0.7
445
Tumor
0.7
351
Tumor
0.7
331
Tumor
0.7
983
Tumor
0.7
517
Tumor
0.6
647
Tumor
0.6
537
Tumor
0.6
573
Tumor
0.6
343
Tumor
0.6
685
Tumor
0.6
963
Tumor
0.6
463
Tumor
0.6
777
Tumor
0.6
297
Tumor
0.5
355
Tumor
0.5
545
Tumor
0.5
285
Tumor
0.5
883
Tumor
0.5
533
Tumor
0.5
431
Tumor
0.5
147
Tumor
0.5
1013
Tumor
0.5
313
Tumor
0.5
375
Tumor
0.5
515
Tumor
0.5
461
Tumor
0.4
283
Tumor
0.4
663
Tumor
0.4
567
Tumor
0.4
661
Tumor
0.4
1041
Tumor
0.4
357
Tumor
0.4
493
Tumor
0.4
815
Tumor
0.4
135
Tumor
0.4
483
Tumor
0.4
211
Tumor
0.3
171
Tumor
0.3
863
Tumor
0.3
911
Tumor
0.3
937
Tumor
0.3
395
Tumor
0.3
913
Tumor
0.3
367
Tumor
0.3
965
Tumor
0.3
923
Tumor
0.3
665
Tumor
0.3
957
Tumor
0.3
943
Tumor
0.3
857
Tumor
0.3
477
Tumor
0.3
455
Tumor
0.3
433
Tumor
0.3
535
Tumor
0.3
123
Tumor
0.2
557
Tumor
0.2
917
Tumor
0.2
1015
Tumor
0.2
413
Tumor
0.2
213
Tumor
0.2
814
Normal
0.2
361
Tumor
0.2
383
Tumor
0.2
311
Tumor
0.2
867
Tumor
0.2
487
Tumor
0.1
393
Tumor
0.1
1043
Tumor
0.1
451
Tumor
0.1
525
Tumor
0.1
267
Tumor
0.1
861
Tumor
0.1
125
Tumor
0.1
187
Tumor
0.1
427
Tumor
0.1
141
Tumor
0.1
721
Tumor
0.1
161
Tumor
0.1
563
Tumor
0.1
755
Tumor
0.1
112
Tumor
0.0
915
Tumor
0.0
257
Tumor
0.0
925
Tumor
0.0
697
Tumor
0.0
192
Normal
0.0
444
Normal
0.0
491
Tumor
0.0
695
Tumor
0.0
745
Tumor
0.0
467
Tumor
-0.1
435
Tumor
-0.1
391
Tumor
-0.1
716
Normal
-0.1
873
Tumor
-0.1
617
Tumor
-0.1
127
Tumor
-0.1
387
Tumor
-0.1
384
Normal
-0.1
421
Tumor
-0.1
195
Tumor
-0.1
727
Tumor
-0.1
185
Tumor
-0.1
724
Normal
-0.1
124
Normal
-0.1
223
Tumor
-0.1
536
Normal
-0.1
1045
Tumor
-0.1
222
Normal
-0.1
365
Tumor
-0.2
713
Tumor
-0.2
341
Tumor
-0.2
191
Tumor
-0.2
744
Normal
-0.2
423
Tumor
-0.2
816
Normal
-0.2
492
Normal
-0.2
818
Normal
-0.2
366
Normal
-0.2
1032
Normal
-0.2
312
Normal
-0.2
785
Tumor
-0.2
268
Normal
-0.2
452
Normal
-0.2
386
Normal
-0.2
498
Normal
-0.2
976
Normal
-0.2
852
Normal
-0.2
261
Tumor
-0.2
396
Normal
-0.2
1027
Tumor
-0.2
145
Tumor
-0.2
446
Normal
-0.2
465
Tumor
-0.2
968
Normal
-0.2
851
Tumor
-0.2
368
Normal
-0.2
952
Normal
-0.2
741
Tumor
-0.2
481
Tumor
-0.2
538
Normal
-0.2
524
Normal
-0.2
953
Tumor
-0.2
434
Normal
-0.2
672
Normal
-0.2
954
Normal
-0.3
615
Tumor
-0.3
662
Normal
-0.3
388
Normal
-0.3
146
Normal
-0.3
984
Normal
-0.3
513
Tumor
-0.3
878
Normal
-0.3
916
Normal
-0.3
1028
Normal
-0.3
392
Normal
-0.3
394
Normal
-0.3
137
Tumor
-0.3
918
Normal
-0.3
874
Normal
-0.3
666
Normal
-0.3
456
Normal
-0.3
944
Normal
-0.3
1042
Normal
-0.3
352
Normal
-0.3
278
Normal
-0.3
332
Normal
-0.3
494
Normal
-0.3
484
Normal
-0.3
981
Tumor
-0.3
232
Normal
-0.3
1046
Normal
-0.3
464
Normal
-0.3
868
Normal
-0.3
298
Normal
-0.3
858
Normal
-0.3
478
Normal
-0.3
554
Normal
-0.3
1026
Normal
-0.3
1014
Normal
-0.3
924
Normal
-0.3
217
Tumor
-0.3
342
Normal
-0.3
1022
Normal
-0.4
448
Normal
-0.4
978
Normal
-0.4
1044
Normal
-0.4
958
Normal
-0.4
353
Tumor
-0.4
864
Normal
-0.4
224
Normal
-0.4
138
Normal
-0.4
862
Normal
-0.4
376
Normal
-0.4
113
Tumor
-0.4
574
Normal
-0.4
746
Normal
-0.4
344
Normal
-0.4
866
Normal
-0.4
664
Normal
-0.4
218
Normal
-0.4
1016
Normal
-0.4
642
Normal
-0.4
482
Normal
-0.4
148
Normal
-0.4
142
Normal
-0.4
956
Normal
-0.4
938
Normal
-0.4
272
Normal
-0.4
132
Normal
-0.4
516
Normal
-0.4
966
Normal
-0.4
314
Normal
-0.4
472
Normal
-0.4
696
Normal
-0.4
627
Tumor
-0.4
955
Tumor
-0.4
362
Normal
-0.4
824
Normal
-0.4
636
Normal
-0.4
468
Normal
-0.4
188
Normal
-0.4
982
Normal
-0.4
514
Normal
-0.4
698
Normal
-0.4
714
Normal
-0.4
528
Normal
-0.4
723
Tumor
-0.4
558
Normal
-0.4
262
Normal
-0.4
546
Normal
-0.4
686
Normal
-0.4
436
Normal
-0.4
488
Normal
-0.4
926
Normal
-0.4
526
Normal
-0.4
572
Normal
-0.4
128
Normal
-0.4
126
Normal
-0.4
284
Normal
-0.4
327
Tumor
-0.4
922
Normal
-0.5
518
Normal
-0.5
466
Normal
-0.5
786
Normal
-0.5
114
Normal
-0.5
884
Normal
-0.5
136
Normal
-0.5
162
Normal
-0.5
214
Normal
-0.5
186
Normal
-0.5
742
Normal
-0.5
196
Normal
-0.5
422
Normal
-0.5
571
Tumor
-0.5
628
Normal
-0.5
286
Normal
-0.5
964
Normal
-0.5
914
Normal
-0.5
172
Normal
-0.5
228
Normal
-0.5
722
Normal
-0.5
778
Normal
-0.5
738
Normal
-0.5
258
Normal
-0.5
354
Normal
-0.5
648
Normal
-0.5
618
Normal
-0.5
415
Tumor
-0.5
756
Normal
-0.5
474
Normal
-0.5
426
Normal
-0.6
424
Normal
-0.6
912
Normal
-0.6
564
Normal
-0.6
111
Normal
-0.6
432
Normal
-0.6
534
Normal
-0.6
212
Normal
-0.6
728
Normal
-0.6
364
Normal
-0.6
882
Normal
-0.6
616
Normal
-0.6
568
Normal
-0.6
462
Normal
-0.6
428
Normal
-0.7
416
Normal
-0.7
412
Normal
-0.7
358
Normal
-0.7
414
Normal
-0.7
328
Normal
-0.8
356
Normal
-0.8
363
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
