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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TTC39C is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
49.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
303.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
270.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
241.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
211.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
199.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
192.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
190.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
178.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
159.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
152.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
151.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
143.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
139.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
136.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
134.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
126.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
124.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
121.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
118.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
116.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
113.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
111.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
106.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
106.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
104.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
104.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
100.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
99.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
93.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
92.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
91.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
89.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
89.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
87.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
87.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
86.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
86.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
85.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
84.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
83.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
83.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
82.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
81.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
80.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
80.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
80.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
79.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
78.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
78.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
78.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
76.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
75.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
75.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
74.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
73.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
73.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
73.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
73.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
72.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
72.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
72.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
70.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
70.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
69.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
69.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
69.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
69.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
69.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
68.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
68.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
68.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
67.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
66.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
65.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
65.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
65.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
64.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
64.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
64.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
64.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
63.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
62.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
62.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
62.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
62.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
62.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
61.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
61.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
61.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
61.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
61.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
61.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
60.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
60.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
59.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
59.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
59.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
58.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
58.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
58.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
57.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
57.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
56.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
56.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
55.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
55.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
55.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
55.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
55.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
55.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
55.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
54.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
54.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
53.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
53.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
52.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
52.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
52.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
51.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
51.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
51.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
50.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
50.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
50.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
50.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
50.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
50.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
50.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
49.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
49.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
49.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
49.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
49.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
49.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
49.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
49.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
48.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
48.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
48.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
48.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
48.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
48.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
48.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
46.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
46.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
46.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
46.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
45.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
45.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
45.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
45.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
45.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
45.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
45.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
44.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
44.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
44.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
44.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
44.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
44.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
43.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
43.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
43.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
43.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
43.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
43.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
43.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
43.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
42.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
42.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
42.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
42.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
42.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
42.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
42.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
42.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
41.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
41.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
41.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
41.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
41.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
41.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
40.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
40.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
40.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
40.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
40.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
40.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
40.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
40.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
39.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
39.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
39.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
39.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
39.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
38.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
38.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
38.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
38.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
38.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
37.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
36.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
36.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
36.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
36.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
35.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
35.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
35.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
35.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
35.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
35.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
34.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
34.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
34.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
34.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
34.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
34.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
34.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
34.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
33.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
33.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
33.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
33.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
33.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
33.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
32.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
32.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
32.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
32.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
32.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
32.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
32.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
32.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
31.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
31.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
31.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
31.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
31.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
31.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
31.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
30.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
30.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
30.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
30.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
30.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
30.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
30.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
29.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
29.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
29.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
29.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
29.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
28.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
28.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
28.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
28.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
28.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
28.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
28.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
27.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
27.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
27.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
27.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
27.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
27.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
27.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
27.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
26.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
26.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
26.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
26.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
26.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
25.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
24.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
24.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
24.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
24.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
24.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
24.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
24.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
23.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
23.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
23.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
23.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
23.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
23.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
23.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
22.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
22.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
22.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
22.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
22.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
22.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
22.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
21.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
21.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
21.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
21.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
21.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
20.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
20.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
20.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
20.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
20.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
20.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
19.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
19.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
19.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
19.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
19.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
19.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
19.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
18.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
18.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
17.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
17.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
16.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
11.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TTC39C is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.9
Number of samples
231
Samples
Sample
Description
TPM
DO45253
0 years, male, NA, stage:2, alive, 870 days
128.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
94.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
78.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
68.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
68.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
61.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
61.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
60.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
59.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
57.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
55.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
53.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
53.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
52.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
52.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
52.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
51.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
50.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
50.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
49.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
48.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
46.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
46.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
45.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
44.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
44.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
43.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
43.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
41.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
41.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
40.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
40.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
40.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
39.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
39.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
38.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
38.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
38.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
37.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
37.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
36.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
36.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
36.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
35.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
35.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
35.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
35.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
34.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
33.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
33.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
33.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
33.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
32.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
32.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
32.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
32.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
32.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
32.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
31.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
31.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
30.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
30.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
30.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
30.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
29.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
29.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
29.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
29.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
28.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
28.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
28.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
28.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
27.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
27.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
27.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
26.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
26.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
26.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
25.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
25.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
25.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
25.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
24.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
24.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
24.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
24.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
24.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
23.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
23.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
23.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
23.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
23.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
23.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
23.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
22.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
22.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
22.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
22.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
21.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
21.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
21.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
21.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
21.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
21.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
21.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
21.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
20.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
20.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
20.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
19.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
19.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
19.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
19.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
18.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
18.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
18.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
18.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
18.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
18.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
18.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
17.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
17.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
17.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
17.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
16.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
8.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
5.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
3.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
2.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
2.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
697
Tumor
1.8
1021
Tumor
1.3
573
Tumor
1.2
395
Tumor
1.2
937
Tumor
1.2
523
Tumor
1.0
635
Tumor
1.0
975
Tumor
0.9
125
Tumor
0.9
271
Tumor
0.9
277
Tumor
0.9
881
Tumor
0.9
737
Tumor
0.9
1025
Tumor
0.9
527
Tumor
0.9
727
Tumor
0.8
343
Tumor
0.8
713
Tumor
0.8
967
Tumor
0.8
327
Tumor
0.8
647
Tumor
0.8
525
Tumor
0.7
1013
Tumor
0.7
147
Tumor
0.7
515
Tumor
0.7
545
Tumor
0.7
285
Tumor
0.7
963
Tumor
0.7
195
Tumor
0.7
411
Tumor
0.7
743
Tumor
0.7
471
Tumor
0.6
1031
Tumor
0.6
463
Tumor
0.6
487
Tumor
0.6
425
Tumor
0.6
923
Tumor
0.6
925
Tumor
0.6
983
Tumor
0.6
745
Tumor
0.5
467
Tumor
0.5
851
Tumor
0.5
445
Tumor
0.5
965
Tumor
0.5
481
Tumor
0.5
221
Tumor
0.5
355
Tumor
0.5
1043
Tumor
0.5
567
Tumor
0.4
455
Tumor
0.4
113
Tumor
0.4
823
Tumor
0.4
223
Tumor
0.4
443
Tumor
0.4
137
Tumor
0.4
297
Tumor
0.4
257
Tumor
0.4
557
Tumor
0.4
943
Tumor
0.4
1015
Tumor
0.4
921
Tumor
0.3
641
Tumor
0.3
363
Tumor
0.3
461
Tumor
0.3
951
Tumor
0.3
817
Tumor
0.3
957
Tumor
0.3
695
Tumor
0.3
415
Tumor
0.3
141
Tumor
0.3
213
Tumor
0.3
191
Tumor
0.3
431
Tumor
0.3
553
Tumor
0.3
721
Tumor
0.3
813
Tumor
0.2
387
Tumor
0.2
755
Tumor
0.2
341
Tumor
0.2
361
Tumor
0.2
1045
Tumor
0.2
421
Tumor
0.2
478
Normal
0.2
472
Normal
0.2
357
Tumor
0.2
857
Tumor
0.2
364
Normal
0.2
298
Normal
0.2
661
Tumor
0.2
465
Tumor
0.2
447
Tumor
0.2
1041
Tumor
0.2
331
Tumor
0.2
865
Tumor
0.2
311
Tumor
0.2
698
Normal
0.2
353
Tumor
0.2
873
Tumor
0.2
135
Tumor
0.2
911
Tumor
0.2
283
Tumor
0.1
187
Tumor
0.1
517
Tumor
0.1
785
Tumor
0.1
913
Tumor
0.1
416
Normal
0.1
227
Tumor
0.1
1032
Normal
0.1
1022
Normal
0.1
217
Tumor
0.1
477
Tumor
0.1
128
Normal
0.1
483
Tumor
0.1
824
Normal
0.1
313
Tumor
0.1
777
Tumor
0.1
123
Tumor
0.1
858
Normal
0.1
196
Normal
0.1
814
Normal
0.1
1042
Normal
0.1
278
Normal
0.1
861
Tumor
0.1
976
Normal
0.1
867
Tumor
0.1
563
Tumor
0.1
412
Normal
0.1
312
Normal
0.1
497
Tumor
0.0
111
Normal
0.0
671
Tumor
0.0
228
Normal
0.0
162
Normal
0.0
672
Normal
0.0
114
Normal
0.0
516
Normal
0.0
222
Normal
0.0
148
Normal
0.0
393
Tumor
0.0
365
Tumor
0.0
1026
Normal
0.0
474
Normal
0.0
1028
Normal
0.0
448
Normal
0.0
462
Normal
0.0
564
Normal
0.0
214
Normal
0.0
172
Normal
0.0
818
Normal
0.0
878
Normal
0.0
742
Normal
0.0
513
Tumor
0.0
218
Normal
0.0
536
Normal
0.0
1014
Normal
0.0
284
Normal
0.0
618
Normal
0.0
862
Normal
0.0
968
Normal
0.0
696
Normal
0.0
915
Tumor
0.0
958
Normal
0.0
367
Tumor
0.0
185
Tumor
0.0
524
Normal
0.0
982
Normal
0.0
376
Normal
0.0
535
Tumor
0.0
192
Normal
0.0
728
Normal
0.0
493
Tumor
0.0
332
Normal
0.0
977
Tumor
0.0
738
Normal
0.0
533
Tumor
0.0
546
Normal
0.0
663
Tumor
0.0
456
Normal
0.0
714
Normal
0.0
966
Normal
0.0
1046
Normal
0.0
188
Normal
0.0
914
Normal
0.0
126
Normal
0.0
286
Normal
0.0
482
Normal
0.0
574
Normal
0.0
778
Normal
0.0
375
Tumor
-0.1
918
Normal
-0.1
816
Normal
-0.1
815
Tumor
-0.1
484
Normal
-0.1
952
Normal
-0.1
518
Normal
-0.1
124
Normal
-0.1
432
Normal
-0.1
351
Tumor
-0.1
863
Tumor
-0.1
473
Tumor
-0.1
746
Normal
-0.1
356
Normal
-0.1
358
Normal
-0.1
211
Tumor
-0.1
874
Normal
-0.1
926
Normal
-0.1
534
Normal
-0.1
866
Normal
-0.1
664
Normal
-0.1
723
Tumor
-0.1
852
Normal
-0.1
212
Normal
-0.1
232
Normal
-0.1
444
Normal
-0.1
572
Normal
-0.1
1027
Tumor
-0.1
314
Normal
-0.1
224
Normal
-0.1
554
Normal
-0.1
944
Normal
-0.1
648
Normal
-0.1
433
Tumor
-0.1
1016
Normal
-0.1
498
Normal
-0.1
514
Normal
-0.1
526
Normal
-0.1
954
Normal
-0.1
186
Normal
-0.1
436
Normal
-0.1
538
Normal
-0.1
528
Normal
-0.1
368
Normal
-0.1
494
Normal
-0.1
964
Normal
-0.1
686
Normal
-0.1
883
Tumor
-0.1
384
Normal
-0.1
916
Normal
-0.1
882
Normal
-0.1
662
Normal
-0.1
568
Normal
-0.1
642
Normal
-0.2
468
Normal
-0.2
161
Tumor
-0.2
744
Normal
-0.2
884
Normal
-0.2
145
Tumor
-0.2
258
Normal
-0.2
666
Normal
-0.2
716
Normal
-0.2
492
Normal
-0.2
427
Tumor
-0.2
956
Normal
-0.2
446
Normal
-0.2
383
Tumor
-0.2
877
Tumor
-0.2
342
Normal
-0.2
272
Normal
-0.2
864
Normal
-0.2
1044
Normal
-0.2
262
Normal
-0.2
136
Normal
-0.2
924
Normal
-0.2
558
Normal
-0.2
922
Normal
-0.2
344
Normal
-0.2
434
Normal
-0.2
724
Normal
-0.2
328
Normal
-0.2
452
Normal
-0.2
352
Normal
-0.2
571
Tumor
-0.2
366
Normal
-0.2
741
Tumor
-0.2
146
Normal
-0.2
464
Normal
-0.2
615
Tumor
-0.2
938
Normal
-0.3
392
Normal
-0.3
261
Tumor
-0.3
868
Normal
-0.3
488
Normal
-0.3
756
Normal
-0.3
466
Normal
-0.3
984
Normal
-0.3
422
Normal
-0.3
127
Tumor
-0.3
267
Tumor
-0.3
722
Normal
-0.3
627
Tumor
-0.3
362
Normal
-0.3
354
Normal
-0.3
132
Normal
-0.3
112
Tumor
-0.3
636
Normal
-0.3
385
Tumor
-0.3
386
Normal
-0.3
786
Normal
-0.3
426
Normal
-0.3
131
Tumor
-0.3
981
Tumor
-0.4
142
Normal
-0.4
394
Normal
-0.4
628
Normal
-0.4
912
Normal
-0.4
617
Tumor
-0.4
396
Normal
-0.4
917
Tumor
-0.4
388
Normal
-0.4
268
Normal
-0.4
414
Normal
-0.4
978
Normal
-0.4
537
Tumor
-0.4
428
Normal
-0.4
138
Normal
-0.4
491
Tumor
-0.5
171
Tumor
-0.5
423
Tumor
-0.5
451
Tumor
-0.5
424
Normal
-0.5
616
Normal
-0.5
953
Tumor
-0.6
955
Tumor
-0.6
665
Tumor
-0.6
231
Tumor
-0.6
413
Tumor
-0.6
391
Tumor
-0.7
435
Tumor
-0.8
715
Tumor
-1.2
685
Tumor
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
