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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB4A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
50.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
49.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
46.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
42.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
41.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
41.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
40.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
40.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
39.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
39.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
38.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
37.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
37.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
35.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
35.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
34.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
34.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
33.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
33.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
33.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
33.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
33.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
33.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
32.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
32.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
32.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
32.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
31.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
31.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
31.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
31.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
30.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
30.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
30.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
29.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
29.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
29.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
29.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
28.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
28.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
28.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
28.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
28.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
28.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
27.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
27.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
27.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
27.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
27.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
26.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
26.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
26.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
25.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
25.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
25.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
25.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
25.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
25.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
25.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
25.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
24.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
24.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
24.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
24.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
23.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
23.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
23.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
23.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
22.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
22.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
22.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
22.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
22.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
22.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
22.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
22.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
22.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
21.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
21.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
21.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
21.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
21.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
21.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
21.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
21.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
21.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
20.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
20.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
20.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
20.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
20.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
20.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
20.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
19.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
19.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
19.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
19.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
19.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
19.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
18.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
18.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
18.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
18.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
18.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
18.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
18.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
17.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
17.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
17.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
17.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
16.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
16.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
16.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
16.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
16.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
16.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
15.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
15.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
15.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
15.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
15.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
14.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
13.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
12.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
12.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
12.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
12.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
11.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
5.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB4A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
32.1
Number of samples
231
Samples
Sample
Description
TPM
DO50802
0 years, male, NA, stage:2, alive, 930 days
160.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
116.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
85.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
81.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
78.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
76.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
75.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
72.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
72.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
70.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
68.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
68.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
67.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
67.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
66.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
64.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
64.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
63.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
62.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
58.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
56.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
56.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
54.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
54.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
53.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
52.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
52.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
52.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
52.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
51.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
51.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
50.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
50.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
49.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
49.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
49.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
49.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
49.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
48.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
48.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
47.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
45.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
45.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
43.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
43.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
42.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
42.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
41.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
40.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
40.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
40.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
40.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
40.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
39.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
39.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
39.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
39.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
39.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
38.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
38.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
38.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
38.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
38.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
38.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
37.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
37.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
37.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
36.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
36.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
35.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
35.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
35.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
35.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
34.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
34.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
33.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
33.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
33.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
33.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
32.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
32.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
32.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
32.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
31.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
31.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
31.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
31.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
31.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
31.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
30.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
30.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
30.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
30.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
29.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
29.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
29.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
29.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
29.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
29.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
29.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
29.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
28.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
28.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
28.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
28.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
28.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
28.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
27.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
27.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
27.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
27.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
27.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
27.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
26.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
26.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
26.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
26.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
26.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
26.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
25.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
25.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
25.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
25.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
25.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
25.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
25.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
25.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
25.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
25.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
24.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
24.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
24.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
24.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
24.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
24.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
23.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
23.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
23.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
23.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
23.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
22.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
22.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
22.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
22.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
22.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
22.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
22.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
22.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
22.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
22.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
22.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
22.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
22.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
22.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
21.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
21.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
21.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
21.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
21.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
21.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
21.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
20.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
20.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
20.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
20.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
20.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
20.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
19.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
19.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
19.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
19.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
19.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
19.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
18.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
17.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
16.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
16.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
16.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
14.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
724
Normal
0.9
1025
Tumor
0.8
921
Tumor
0.8
147
Tumor
0.8
131
Tumor
0.8
743
Tumor
0.7
877
Tumor
0.7
967
Tumor
0.6
227
Tumor
0.6
527
Tumor
0.6
697
Tumor
0.6
715
Tumor
0.6
1027
Tumor
0.5
1031
Tumor
0.5
1021
Tumor
0.5
881
Tumor
0.5
685
Tumor
0.5
713
Tumor
0.5
863
Tumor
0.5
123
Tumor
0.5
471
Tumor
0.5
1013
Tumor
0.4
745
Tumor
0.4
351
Tumor
0.4
915
Tumor
0.4
271
Tumor
0.4
755
Tumor
0.4
125
Tumor
0.4
393
Tumor
0.4
231
Tumor
0.4
573
Tumor
0.4
665
Tumor
0.4
911
Tumor
0.4
557
Tumor
0.4
257
Tumor
0.3
523
Tumor
0.3
553
Tumor
0.3
413
Tumor
0.3
481
Tumor
0.3
515
Tumor
0.3
721
Tumor
0.3
385
Tumor
0.3
487
Tumor
0.3
777
Tumor
0.3
313
Tumor
0.2
283
Tumor
0.2
817
Tumor
0.2
963
Tumor
0.2
363
Tumor
0.2
727
Tumor
0.2
1043
Tumor
0.2
285
Tumor
0.2
965
Tumor
0.2
977
Tumor
0.2
861
Tumor
0.2
641
Tumor
0.2
537
Tumor
0.2
517
Tumor
0.2
671
Tumor
0.2
567
Tumor
0.2
723
Tumor
0.2
221
Tumor
0.2
435
Tumor
0.2
277
Tumor
0.2
627
Tumor
0.2
1032
Normal
0.2
483
Tumor
0.2
1028
Normal
0.2
823
Tumor
0.2
975
Tumor
0.2
916
Normal
0.2
332
Normal
0.2
647
Tumor
0.2
851
Tumor
0.2
913
Tumor
0.1
411
Tumor
0.1
491
Tumor
0.1
436
Normal
0.1
968
Normal
0.1
361
Tumor
0.1
1041
Tumor
0.1
571
Tumor
0.1
867
Tumor
0.1
395
Tumor
0.1
1042
Normal
0.1
327
Tumor
0.1
223
Tumor
0.1
171
Tumor
0.1
445
Tumor
0.1
917
Tumor
0.1
432
Normal
0.1
698
Normal
0.1
433
Tumor
0.1
186
Normal
0.1
365
Tumor
0.1
137
Tumor
0.1
463
Tumor
0.1
261
Tumor
0.1
526
Normal
0.1
451
Tumor
0.1
923
Tumor
0.1
314
Normal
0.1
981
Tumor
0.1
964
Normal
0.1
661
Tumor
0.1
514
Normal
0.1
447
Tumor
0.1
865
Tumor
0.1
446
Normal
0.1
615
Tumor
0.1
1022
Normal
0.1
958
Normal
0.1
518
Normal
0.1
864
Normal
0.1
737
Tumor
0.1
368
Normal
0.1
528
Normal
0.1
425
Tumor
0.1
493
Tumor
0.1
162
Normal
0.1
746
Normal
0.1
976
Normal
0.1
868
Normal
0.1
616
Normal
0.1
1026
Normal
0.1
617
Tumor
0.1
431
Tumor
0.1
978
Normal
0.1
211
Tumor
0.1
124
Normal
0.1
213
Tumor
0.1
635
Tumor
0.1
778
Normal
0.1
884
Normal
0.1
464
Normal
0.1
568
Normal
0.0
922
Normal
0.0
882
Normal
0.0
716
Normal
0.0
741
Tumor
0.0
852
Normal
0.0
534
Normal
0.0
636
Normal
0.0
558
Normal
0.0
343
Tumor
0.0
878
Normal
0.0
572
Normal
0.0
618
Normal
0.0
648
Normal
0.0
912
Normal
0.0
414
Normal
0.0
448
Normal
0.0
422
Normal
0.0
742
Normal
0.0
342
Normal
0.0
722
Normal
0.0
966
Normal
0.0
482
Normal
0.0
284
Normal
0.0
191
Tumor
0.0
278
Normal
0.0
132
Normal
0.0
524
Normal
0.0
148
Normal
0.0
944
Normal
0.0
426
Normal
0.0
466
Normal
0.0
756
Normal
0.0
1044
Normal
0.0
786
Normal
0.0
356
Normal
0.0
272
Normal
0.0
391
Tumor
0.0
128
Normal
0.0
415
Tumor
0.0
1045
Tumor
0.0
488
Normal
0.0
312
Normal
0.0
421
Tumor
0.0
538
Normal
0.0
195
Tumor
0.0
873
Tumor
0.0
185
Tumor
0.0
1046
Normal
0.0
473
Tumor
0.0
816
Normal
0.0
354
Normal
0.0
196
Normal
0.0
957
Tumor
0.0
1016
Normal
0.0
111
Normal
0.0
127
Tumor
0.0
862
Normal
0.0
866
Normal
0.0
262
Normal
0.0
412
Normal
0.0
564
Normal
0.0
187
Tumor
0.0
172
Normal
0.0
926
Normal
0.0
311
Tumor
0.0
258
Normal
0.0
914
Normal
0.0
1014
Normal
0.0
924
Normal
0.0
951
Tumor
0.0
358
Normal
0.0
662
Normal
0.0
362
Normal
0.0
388
Normal
0.0
686
Normal
0.0
188
Normal
0.0
434
Normal
0.0
376
Normal
0.0
955
Tumor
0.0
666
Normal
0.0
456
Normal
0.0
938
Normal
0.0
461
Tumor
0.0
728
Normal
0.0
138
Normal
0.0
546
Normal
0.0
136
Normal
0.0
145
Tumor
0.0
472
Normal
0.0
344
Normal
0.0
628
Normal
0.0
212
Normal
0.0
536
Normal
0.0
785
Tumor
0.0
222
Normal
0.0
954
Normal
0.0
696
Normal
0.0
126
Normal
0.0
462
Normal
0.0
563
Tumor
0.0
813
Tumor
0.0
982
Normal
0.0
874
Normal
0.0
328
Normal
-0.1
387
Tumor
-0.1
352
Normal
-0.1
984
Normal
-0.1
478
Normal
-0.1
341
Tumor
-0.1
424
Normal
-0.1
286
Normal
-0.1
738
Normal
-0.1
228
Normal
-0.1
545
Tumor
-0.1
498
Normal
-0.1
298
Normal
-0.1
858
Normal
-0.1
983
Tumor
-0.1
468
Normal
-0.1
642
Normal
-0.1
224
Normal
-0.1
428
Normal
-0.1
857
Tumor
-0.1
664
Normal
-0.1
574
Normal
-0.1
113
Tumor
-0.1
114
Normal
-0.1
818
Normal
-0.1
416
Normal
-0.1
516
Normal
-0.1
714
Normal
-0.1
214
Normal
-0.1
494
Normal
-0.1
268
Normal
-0.1
146
Normal
-0.1
484
Normal
-0.1
142
Normal
-0.1
824
Normal
-0.1
217
Tumor
-0.1
455
Tumor
-0.1
297
Tumor
-0.1
525
Tumor
-0.1
232
Normal
-0.1
331
Tumor
-0.1
396
Normal
-0.1
218
Normal
-0.1
918
Normal
-0.1
744
Normal
-0.1
452
Normal
-0.1
357
Tumor
-0.1
672
Normal
-0.1
386
Normal
-0.1
554
Normal
-0.1
443
Tumor
-0.1
394
Normal
-0.1
952
Normal
-0.1
353
Tumor
-0.1
925
Tumor
-0.1
492
Normal
-0.1
956
Normal
-0.1
192
Normal
-0.1
814
Normal
-0.1
513
Tumor
-0.1
383
Tumor
-0.1
366
Normal
-0.1
364
Normal
-0.1
1015
Tumor
-0.1
474
Normal
-0.2
392
Normal
-0.2
533
Tumor
-0.2
815
Tumor
-0.2
375
Tumor
-0.2
427
Tumor
-0.2
943
Tumor
-0.2
355
Tumor
-0.2
384
Normal
-0.2
695
Tumor
-0.2
663
Tumor
-0.2
135
Tumor
-0.2
444
Normal
-0.2
141
Tumor
-0.2
953
Tumor
-0.2
497
Tumor
-0.2
112
Tumor
-0.2
937
Tumor
-0.2
465
Tumor
-0.3
883
Tumor
-0.3
535
Tumor
-0.3
423
Tumor
-0.3
267
Tumor
-0.3
477
Tumor
-0.3
367
Tumor
-0.4
467
Tumor
-0.4
161
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.