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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NUDT16L1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
84.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
64.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
64.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
60.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
57.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
56.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
55.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
54.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
53.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
53.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
50.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
49.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
48.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
46.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
45.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
45.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
44.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
42.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
42.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
40.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
39.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
38.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
38.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
38.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
38.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
37.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
37.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
37.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
36.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
35.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
35.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
35.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
34.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
34.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
34.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
34.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
33.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
33.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
33.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
33.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
33.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
32.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
32.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
32.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
32.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
32.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
31.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
31.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
31.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
31.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
31.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
31.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
31.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
31.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
31.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
31.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
31.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
31.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
31.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
31.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
31.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
31.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
31.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
31.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
30.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
30.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
30.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
30.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
30.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
30.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
30.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
29.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
29.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
29.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
29.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
29.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
29.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
29.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
28.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
28.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
28.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
28.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
28.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
28.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
28.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
28.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
28.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
28.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
28.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
28.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
28.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
27.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
27.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
27.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
27.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
27.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
27.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
27.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
27.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
27.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
27.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
27.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
27.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
27.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
27.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
27.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
27.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
26.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
26.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
26.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
26.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
26.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
26.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
26.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
26.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
26.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
26.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
26.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
26.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
26.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
26.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
25.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
25.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
25.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
25.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
25.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
25.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
25.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
25.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
25.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
25.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
25.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
25.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
25.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
25.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
25.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
25.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
25.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
24.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
24.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
24.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
24.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
24.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
24.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
24.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
24.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
24.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
24.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
24.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
24.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
24.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
24.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
24.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
24.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
24.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
24.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
24.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
23.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
23.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
23.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
23.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
23.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
23.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
23.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
23.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
23.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
23.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
23.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
23.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
23.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
23.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
23.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
23.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
23.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
23.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
22.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
22.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
22.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
22.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
22.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
22.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
22.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
22.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
22.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
22.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
22.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
22.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
22.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
22.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
22.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
22.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
22.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
22.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
22.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
22.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
21.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
21.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
21.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
21.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
21.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
21.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
21.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
21.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
21.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
21.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
21.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
21.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
21.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
21.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
21.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
21.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
21.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
20.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
20.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
20.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
20.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
20.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
20.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
20.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
20.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
20.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
20.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
20.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
20.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
19.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
19.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
19.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
19.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
19.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
19.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
19.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
19.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
19.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
19.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
19.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
18.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
18.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
18.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
18.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
18.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
18.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
18.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
18.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
17.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
17.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
17.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
17.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
17.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
16.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
16.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
16.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
16.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
16.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
16.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
16.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
16.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
16.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
15.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
15.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
15.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
14.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
11.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NUDT16L1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.3
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
47.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
44.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
43.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
41.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
41.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
40.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
37.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
37.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
36.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
35.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
34.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
33.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
30.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
30.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
30.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
30.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
29.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
28.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
28.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
27.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
27.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
27.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
27.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
26.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
25.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
25.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
25.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
25.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
25.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
25.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
24.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
24.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
24.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
24.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
24.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
23.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
23.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
23.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
22.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
22.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
22.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
22.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
22.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
22.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
22.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
22.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
21.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
21.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
21.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
21.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
21.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
21.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
21.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
21.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
20.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
20.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
20.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
20.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
20.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
20.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
20.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
20.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
20.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
19.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
19.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
19.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
18.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
17.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
17.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
16.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
15.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
695
Tumor
1.3
967
Tumor
1.0
465
Tumor
0.9
663
Tumor
0.8
341
Tumor
0.7
435
Tumor
0.7
391
Tumor
0.6
571
Tumor
0.6
981
Tumor
0.6
227
Tumor
0.6
127
Tumor
0.5
313
Tumor
0.5
713
Tumor
0.5
647
Tumor
0.5
1013
Tumor
0.5
413
Tumor
0.4
727
Tumor
0.4
617
Tumor
0.4
911
Tumor
0.4
867
Tumor
0.4
937
Tumor
0.4
423
Tumor
0.4
331
Tumor
0.4
473
Tumor
0.4
925
Tumor
0.4
113
Tumor
0.4
298
Normal
0.4
222
Normal
0.4
965
Tumor
0.4
196
Normal
0.4
635
Tumor
0.4
482
Normal
0.4
365
Tumor
0.4
367
Tumor
0.4
148
Normal
0.4
517
Tumor
0.4
128
Normal
0.4
355
Tumor
0.4
161
Tumor
0.3
314
Normal
0.3
277
Tumor
0.3
877
Tumor
0.3
913
Tumor
0.3
162
Normal
0.3
824
Normal
0.3
464
Normal
0.3
944
Normal
0.3
411
Tumor
0.3
983
Tumor
0.3
951
Tumor
0.3
297
Tumor
0.3
432
Normal
0.3
641
Tumor
0.3
436
Normal
0.3
1041
Tumor
0.3
642
Normal
0.2
741
Tumor
0.2
755
Tumor
0.2
818
Normal
0.2
145
Tumor
0.2
714
Normal
0.2
912
Normal
0.2
533
Tumor
0.2
572
Normal
0.2
882
Normal
0.2
664
Normal
0.2
451
Tumor
0.2
616
Normal
0.2
497
Tumor
0.2
743
Tumor
0.2
564
Normal
0.2
513
Tumor
0.2
195
Tumor
0.2
1042
Normal
0.2
258
Normal
0.2
271
Tumor
0.2
332
Normal
0.2
568
Normal
0.2
627
Tumor
0.2
615
Tumor
0.2
881
Tumor
0.2
172
Normal
0.2
364
Normal
0.2
865
Tumor
0.2
982
Normal
0.2
864
Normal
0.2
954
Normal
0.2
618
Normal
0.2
964
Normal
0.2
214
Normal
0.2
375
Tumor
0.2
132
Normal
0.2
272
Normal
0.2
221
Tumor
0.2
466
Normal
0.2
477
Tumor
0.2
278
Normal
0.2
628
Normal
0.2
866
Normal
0.2
484
Normal
0.2
662
Normal
0.2
412
Normal
0.2
915
Tumor
0.2
328
Normal
0.2
356
Normal
0.1
191
Tumor
0.1
285
Tumor
0.1
362
Normal
0.1
123
Tumor
0.1
1032
Normal
0.1
114
Normal
0.1
376
Normal
0.1
874
Normal
0.1
666
Normal
0.1
462
Normal
0.1
938
Normal
0.1
431
Tumor
0.1
111
Normal
0.1
884
Normal
0.1
171
Tumor
0.1
218
Normal
0.1
756
Normal
0.1
1046
Normal
0.1
963
Tumor
0.1
358
Normal
0.1
353
Tumor
0.1
1014
Normal
0.1
472
Normal
0.1
446
Normal
0.1
878
Normal
0.1
456
Normal
0.1
366
Normal
0.1
228
Normal
0.1
858
Normal
0.1
487
Tumor
0.1
722
Normal
0.1
468
Normal
0.1
534
Normal
0.1
1021
Tumor
0.1
186
Normal
0.1
192
Normal
0.1
956
Normal
0.1
424
Normal
0.1
428
Normal
0.1
574
Normal
0.1
554
Normal
0.1
112
Tumor
0.1
126
Normal
0.1
414
Normal
0.1
427
Tumor
0.1
918
Normal
0.1
1031
Tumor
0.1
467
Tumor
0.1
515
Tumor
0.1
786
Normal
0.1
136
Normal
0.1
648
Normal
0.1
232
Normal
0.1
416
Normal
0.1
141
Tumor
0.1
138
Normal
0.1
481
Tumor
0.1
361
Tumor
0.1
968
Normal
0.1
883
Tumor
0.1
393
Tumor
0.1
1026
Normal
0.1
217
Tumor
0.1
444
Normal
0.1
924
Normal
0.1
746
Normal
0.1
146
Normal
0.1
185
Tumor
0.1
672
Normal
0.1
861
Tumor
0.1
563
Tumor
0.1
728
Normal
0.1
546
Normal
0.1
213
Tumor
0.1
351
Tumor
0.1
286
Normal
0.1
267
Tumor
0.0
698
Normal
0.0
422
Normal
0.0
777
Tumor
0.0
312
Normal
0.0
525
Tumor
0.0
926
Normal
0.0
636
Normal
0.0
744
Normal
0.0
188
Normal
0.0
914
Normal
0.0
342
Normal
0.0
394
Normal
0.0
862
Normal
0.0
528
Normal
0.0
952
Normal
0.0
433
Tumor
0.0
716
Normal
0.0
384
Normal
0.0
518
Normal
0.0
488
Normal
0.0
268
Normal
0.0
686
Normal
0.0
922
Normal
0.0
474
Normal
0.0
742
Normal
0.0
723
Tumor
0.0
873
Tumor
0.0
953
Tumor
0.0
452
Normal
0.0
738
Normal
0.0
257
Tumor
0.0
813
Tumor
0.0
388
Normal
0.0
494
Normal
0.0
461
Tumor
0.0
425
Tumor
0.0
665
Tumor
0.0
976
Normal
0.0
147
Tumor
0.0
1022
Normal
0.0
426
Normal
0.0
958
Normal
0.0
923
Tumor
0.0
284
Normal
0.0
352
Normal
0.0
231
Tumor
0.0
357
Tumor
0.0
262
Normal
0.0
868
Normal
0.0
386
Normal
0.0
478
Normal
0.0
977
Tumor
0.0
514
Normal
0.0
1028
Normal
0.0
368
Normal
0.0
1045
Tumor
0.0
1016
Normal
-0.1
434
Normal
-0.1
778
Normal
-0.1
396
Normal
-0.1
955
Tumor
-0.1
1044
Normal
-0.1
943
Tumor
-0.1
916
Normal
-0.1
978
Normal
-0.1
816
Normal
-0.1
966
Normal
-0.1
448
Normal
-0.1
124
Normal
-0.1
415
Tumor
-0.1
975
Tumor
-0.1
445
Tumor
-0.1
392
Normal
-0.1
1015
Tumor
-0.1
817
Tumor
-0.1
212
Normal
-0.1
492
Normal
-0.1
984
Normal
-0.1
558
Normal
-0.1
463
Tumor
-0.1
526
Normal
-0.1
383
Tumor
-0.1
957
Tumor
-0.1
354
Normal
-0.1
344
Normal
-0.1
696
Normal
-0.1
363
Tumor
-0.2
852
Normal
-0.2
387
Tumor
-0.2
516
Normal
-0.2
142
Normal
-0.2
447
Tumor
-0.2
661
Tumor
-0.2
224
Normal
-0.2
137
Tumor
-0.2
443
Tumor
-0.2
483
Tumor
-0.2
395
Tumor
-0.2
491
Tumor
-0.2
917
Tumor
-0.2
187
Tumor
-0.2
724
Normal
-0.2
851
Tumor
-0.2
538
Normal
-0.2
135
Tumor
-0.2
385
Tumor
-0.2
557
Tumor
-0.2
785
Tumor
-0.2
921
Tumor
-0.2
524
Normal
-0.3
498
Normal
-0.3
536
Normal
-0.3
1025
Tumor
-0.3
537
Tumor
-0.3
455
Tumor
-0.3
553
Tumor
-0.3
857
Tumor
-0.3
493
Tumor
-0.3
471
Tumor
-0.3
1027
Tumor
-0.3
573
Tumor
-0.3
814
Normal
-0.3
671
Tumor
-0.3
125
Tumor
-0.3
721
Tumor
-0.3
567
Tumor
-0.3
697
Tumor
-0.3
327
Tumor
-0.3
343
Tumor
-0.3
545
Tumor
-0.3
535
Tumor
-0.4
1043
Tumor
-0.4
421
Tumor
-0.4
823
Tumor
-0.4
131
Tumor
-0.4
311
Tumor
-0.4
815
Tumor
-0.5
223
Tumor
-0.5
745
Tumor
-0.5
523
Tumor
-0.5
211
Tumor
-0.5
737
Tumor
-0.5
863
Tumor
-0.5
715
Tumor
-0.5
283
Tumor
-0.6
261
Tumor
-0.6
527
Tumor
-0.6
685
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
