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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
92.4
nTPM
HPA Brain:
64.0
nTPM
GTEx:
92.4
nTPM
FANTOM5:
29.0
Scaled Tags Per Million
Pig:
88.0
nTPM
Mouse:
180.8
nTPM
Allen mouse:
9.6
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
64.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 57.1
1870
Female, age 42, unknown
64.9
2411
Female, age 72, unknown
64.3
2019
Male, age 18, unknown
62.4
1827
Male, age 72, unknown
61.7
1833
Male, age 53, unknown
57.6
2219
Male, age 76, both hemispheres
54.3
2828
Female, age 72, unknown
54.3
1830
Male, age 51, unknown
53.2
2586
Male, age 75, left hemisphere
50.9
2666
Male, age 74, left hemisphere
47.9
Dorsal raphe nucleus nTPM: 64.0
2298
Female, age 72, unknown
77.6
2750
Male, age 76, both hemispheres
65.1
2047
Male, age 72, unknown
61.3
1828
Male, age 53, unknown
59.3
2016
Female, age 72, unknown
56.6
Inferior colliculus nTPM: 63.3
2097
Female, age 72, unknown
69.4
1890
Male, age 53, unknown
64.4
1848
Female, age 42, unknown
61.3
2849
Male, age 72, unknown
58.0
Median raphe nucleus nTPM: 59.7
2220
Male, age 76, midline
59.7
Periaquaductal grey, anterior nTPM: 62.5
2502
Female, age 75, unknown
65.5
1947
Male, age 18, unknown
64.5
1795
Male, age 51, unknown
57.6
Periaquaductal grey, dorsal nTPM: 55.4
1840
Male, age 53, unknown
64.3
2464
Female, age 72, unknown
55.5
2850
Male, age 76, both hemispheres
52.3
1831
Male, age 72, unknown
49.6
Periaquaductal grey, lateral nTPM: 57.7
2272
Male, age 74, both hemispheres
67.2
2053
Male, age 18, unknown
53.1
2140
Male, age 76, both hemispheres
52.8
Pretectal area nTPM: 60.8
2273
Male, age 74, both hemispheres
75.3
1944
Female, age 72, unknown
68.2
2224
Female, age 72, unknown
65.7
1817
Female, age 42, unknown
64.9
2007
Male, age 72, unknown
64.6
1816
Male, age 51, unknown
62.1
2667
Female, age 75, unknown
59.4
1815
Male, age 53, unknown
59.0
2825
Male, age 18, unknown
55.8
2407
Male, age 75, both hemispheres
49.3
2316
Male, age 76, right hemisphere
44.8
Red nucleus nTPM: 56.3
1821
Female, age 72, unknown
68.1
1865
Male, age 51, unknown
59.2
1954
Female, age 42, unknown
58.3
2785
Male, age 18, unknown
57.7
2769
Male, age 72, unknown
57.2
1904
Male, age 53, unknown
57.0
2227
Male, age 72, unknown
57.0
2503
Female, age 72, unknown
56.6
2725
Female, age 75, unknown
54.4
2823
Male, age 76, right hemisphere
52.1
2588
Male, age 74, left hemisphere
51.1
2584
Male, age 75, left hemisphere
46.6
Substantia nigra nTPM: 62.9
1916
Female, age 42, unknown
76.5
1851
Male, age 51, unknown
74.4
2241
Male, age 72, unknown
72.6
1889
Female, age 72, unknown
65.7
2699
Male, age 18, unknown
63.2
1941
Male, age 53, unknown
60.9
2409
Female, age 72, unknown
55.8
2665
Male, age 74, both hemispheres
55.3
2590
Female, age 75, unknown
54.5
2583
Male, age 75, right hemisphere
49.7
Superior colliculus nTPM: 56.2
2587
Male, age 74, left hemisphere
65.8
2668
Female, age 75, unknown
63.6
1796
Male, age 53, unknown
60.7
1895
Male, age 76, right hemisphere
59.2
2087
Female, age 72, unknown
55.3
2261
Male, age 18, unknown
54.9
1839
Male, age 51, unknown
54.1
1913
Female, age 42, unknown
53.6
1995
Male, age 72, unknown
49.9
2664
Male, age 75, both hemispheres
45.2
Ventral tegmental area nTPM: 62.9
2410
Female, age 72, unknown
74.5
1915
Female, age 42, unknown
70.0
2223
Female, age 72, unknown
61.5
2218
Male, age 76, both hemispheres
61.3
1942
Male, age 51, unknown
57.6
2021
Male, age 53, unknown
52.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
92.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 92.4
Samples: 139
Max nTPM: 145.8
Min nTPM: 55.5
Std nTPM: 14.9
Median nTPM: 90.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
145.8
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
143.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
124.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
121.5
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
121.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
120.5
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
119.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
119.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
118.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
118.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
115.8
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
115.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
115.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
115.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
114.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
112.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
111.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
111.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
107.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
106.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
106.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
105.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
105.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
105.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
105.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
104.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
104.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
104.0
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
103.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
103.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
103.1
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
102.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
102.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
101.6
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
99.6
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
99.3
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
99.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
99.2
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
98.9
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
98.6
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
98.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
98.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
98.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
98.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
98.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
97.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
96.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
96.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
96.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
95.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
95.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
94.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
93.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
93.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
93.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
93.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
93.4
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
93.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
92.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
92.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
92.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
92.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
92.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
92.1
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
92.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
91.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
91.8
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
91.1
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
91.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
90.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
90.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
89.2
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
89.2
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
89.2
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
88.9
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
88.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
88.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
88.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
88.2
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
88.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
88.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
88.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
87.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
87.8
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
87.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
87.5
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
87.2
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
86.1
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
86.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
85.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
85.8
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
85.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
85.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
84.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
84.6
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
84.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
83.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
83.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
83.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
83.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
82.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
82.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
82.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
82.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
82.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
82.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
81.8
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
81.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
81.1
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
81.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
80.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
80.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
80.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
80.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
79.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
79.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
79.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
79.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
78.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
78.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
78.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
78.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
77.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
76.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
76.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
75.0
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
74.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
73.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
72.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
71.9
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
71.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
70.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
69.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
69.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
68.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
68.0
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
67.0
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
64.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
55.5
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
180.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 180.8
Samples: 4
Max nTPM: 191.9
Min nTPM: 172.5
Sample A
Male
191.9
Sample B
Male
180.6
Sample C
Female
172.5
Sample D
Female
178.2
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.