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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
86.6
nTPM
HPA Brain:
69.4
nTPM
GTEx:
86.6
nTPM
FANTOM5:
25.8
Scaled Tags Per Million
Pig:
77.9
nTPM
Mouse:
168.5
nTPM
Allen mouse:
11.0
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA044315
Glial cells
Low
Neuronal cells
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
69.4
Sample id
Sample description
nTPM
Hippocampus nTPM: 57.0
1898
Male, age 80, left hemisphere
69.5
1855
Male, age 76, left hemisphere
58.9
2621
Female, age 67, right hemisphere
57.7
2529
Female, age 94, left hemisphere
57.4
2148
Female, age 91, left hemisphere
49.5
1911
Female, age 85, right hemisphere
49.0
Dentate gyrus nTPM: 56.0
2530
Female, age 94, left hemisphere
62.6
2528
Male, age 74, both hemispheres
62.2
1927
Female, age 91, both hemispheres
57.7
2010
Male, age 76, both hemispheres
56.8
2246
Female, age 85, both hemispheres
50.7
2531
Female, age 67, both hemispheres
45.9
Entorhinal gyrus nTPM: 56.4
2764
Male, age 80, right hemisphere
67.3
1938
Female, age 85, left hemisphere
62.7
1787
Male, age 76, left hemisphere
61.0
2117
Female, age 91, right hemisphere
52.7
2613
Female, age 94, left hemisphere
51.4
2686
Male, age 75, right hemisphere
43.6
Hippocampus, CA1 nTPM: 61.8
2749
Male, age 80, left hemisphere
76.9
1873
Female, age 85, both hemispheres
60.6
2527
Male, age 74, both hemispheres
59.1
2045
Male, age 76, both hemispheres
56.4
2082
Female, age 91, right hemisphere
56.1
Hippocampus, CA2 nTPM: 61.7
2249
Male, age 74, both hemispheres
71.1
1892
Male, age 76, both hemispheres
70.4
1963
Male, age 80, left hemisphere
65.5
2437
Female, age 94, left hemisphere
58.3
1940
Female, age 85, left hemisphere
55.8
2113
Female, age 91, right hemisphere
49.1
Hippocampus, CA3 nTPM: 58.5
2137
Male, age 80, left hemisphere
69.0
2436
Male, age 74, both hemispheres
63.3
1867
Male, age 76, both hemispheres
62.2
1891
Female, age 85, both hemispheres
58.9
2620
Female, age 94, left hemisphere
56.5
2861
Female, age 67, both hemispheres
41.4
Parahippocampal cortex nTPM: 55.4
1850
Male, age 80, both hemispheres
72.0
1933
Female, age 85, both hemispheres
67.0
2250
Female, age 67, right hemisphere
59.3
1990
Female, age 91, right hemisphere
55.8
2018
Male, age 76, both hemispheres
55.0
2532
Female, age 72, left hemisphere
54.7
2693
Female, age 94, both hemispheres
52.1
2245
Female, age 91, both hemispheres
51.2
2692
Male, age 74, both hemispheres
47.3
2622
Female, age 67, right hemisphere
39.8
Perirhinal gyrus nTPM: 69.4
1847
Female, age 91, left hemisphere
80.8
1794
Male, age 80, right hemisphere
76.0
1841
Female, age 85, right hemisphere
68.8
2848
Male, age 76, right hemisphere
60.7
2521
Female, age 94, right hemisphere
60.5
Subiculum nTPM: 53.8
1977
Female, age 85, both hemispheres
64.2
2619
Male, age 74, both hemispheres
60.0
1901
Male, age 80, both hemispheres
59.8
2042
Male, age 76, both hemispheres
51.4
2729
Female, age 91, right hemisphere
49.7
2438
Female, age 94, left hemisphere
37.6
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
86.6
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 86.6
Samples: 197
Max nTPM: 161.3
Min nTPM: 50.5
Std nTPM: 15.7
Median nTPM: 85.1
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
161.3
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
131.5
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
128.7
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
128.6
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
118.4
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
117.5
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
116.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
114.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
113.6
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
112.1
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
111.0
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
111.0
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
110.7
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
110.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
109.5
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
108.4
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
107.6
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
106.8
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
106.6
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
106.3
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
105.4
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
104.9
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
104.5
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
104.2
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
104.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
103.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
103.8
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
103.5
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
103.5
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
102.8
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
102.8
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
102.5
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
102.2
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
101.9
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
100.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
100.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
100.5
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
100.0
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
100.0
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
99.5
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
99.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
99.1
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
98.4
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
98.1
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
98.0
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
97.6
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
97.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
96.7
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
96.2
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
95.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
94.9
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
94.7
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
94.2
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
94.2
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
94.0
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
93.7
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
93.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
93.6
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
93.5
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
92.8
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
92.4
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
92.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
92.3
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
92.2
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
92.1
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
91.9
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
91.8
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
91.6
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
91.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
91.4
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
91.2
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
90.8
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
90.8
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
90.0
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
88.9
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
88.4
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
88.4
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
88.3
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
88.2
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
88.2
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
88.1
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
88.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
88.0
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
87.9
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
87.9
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
87.7
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
87.6
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
87.6
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
87.5
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
87.4
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
87.3
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
87.0
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
86.8
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
86.6
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
86.0
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
86.0
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
85.8
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
85.3
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
85.1
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
84.6
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
84.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
84.5
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
84.4
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
84.3
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
84.3
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
84.3
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
84.1
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
84.1
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
84.1
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
84.1
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
83.9
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
83.8
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
82.7
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
82.5
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
82.3
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
82.0
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
81.7
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
81.7
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
81.6
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
81.6
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
81.3
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
80.9
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
80.9
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
80.8
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
80.8
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
80.7
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
80.4
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
80.2
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
80.0
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
79.9
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
79.9
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
79.6
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
79.2
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
79.2
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
79.2
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
79.0
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
78.8
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
78.6
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
77.4
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
77.2
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
77.2
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
76.9
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
76.8
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
76.8
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
76.8
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
76.6
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
76.6
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
76.5
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
76.1
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
76.0
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
75.5
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
75.4
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
75.3
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
75.1
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
74.9
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
74.5
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
74.2
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
74.1
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
74.0
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
73.9
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
72.7
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
72.6
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
72.4
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
72.3
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
72.1
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
71.6
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
71.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
71.4
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
69.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
69.3
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
69.3
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
68.9
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
68.6
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
67.9
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
67.9
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
67.5
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
67.5
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
67.4
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
67.2
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
67.2
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
67.1
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
67.0
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
66.7
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
65.3
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
64.5
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
64.3
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
63.6
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
63.2
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
63.1
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
63.0
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
62.8
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
62.6
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
62.0
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
58.7
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
53.9
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
51.4
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
50.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
168.5
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 161.1
Samples: 4
Max nTPM: 170.6
Min nTPM: 148.9
Sample A
Male
148.9
Sample B
Male
157.4
Sample C
Female
170.6
Sample D
Female
167.6
Hippocampal formation nTPM: 168.5
Samples: 4
Max nTPM: 186.3
Min nTPM: 157.9
Sample A
Male
186.3
Sample B
Male
157.9
Sample C
Female
165.8
Sample D
Female
164.1
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.