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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SF1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
39.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
110.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
103.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
102.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
92.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
88.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
87.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
84.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
83.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
83.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
82.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
82.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
79.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
78.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
77.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
77.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
75.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
74.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
74.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
73.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
72.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
72.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
72.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
69.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
68.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
68.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
67.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
67.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
66.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
66.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
65.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
65.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
64.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
64.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
64.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
62.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
62.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
62.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
61.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
61.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
61.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
60.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
60.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
60.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
59.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
59.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
59.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
59.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
58.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
58.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
58.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
58.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
58.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
57.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
57.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
56.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
56.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
56.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
55.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
55.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
55.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
55.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
55.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
54.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
54.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
54.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
54.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
53.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
53.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
53.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
53.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
53.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
53.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
52.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
52.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
52.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
52.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
52.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
51.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
51.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
51.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
51.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
51.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
51.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
51.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
50.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
50.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
50.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
50.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
50.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
49.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
49.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
49.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
49.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
49.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
48.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
48.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
48.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
48.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
48.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
47.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
47.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
47.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
47.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
47.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
47.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
47.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
47.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
46.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
46.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
46.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
46.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
46.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
46.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
46.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
46.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
46.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
46.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
45.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
45.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
45.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
45.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
44.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
44.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
44.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
44.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
43.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
43.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
43.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
43.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
43.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
43.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
43.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
43.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
43.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
43.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
43.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
43.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
43.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
42.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
42.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
42.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
42.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
42.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
42.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
42.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
42.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
42.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
41.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
41.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
41.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
41.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
41.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
41.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
41.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
41.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
41.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
41.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
40.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
40.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
40.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
40.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
40.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
40.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
40.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
40.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
40.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
39.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
39.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
39.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
39.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
39.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
39.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
39.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
39.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
39.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
39.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
38.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
38.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
38.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
38.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
38.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
38.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
38.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
38.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
38.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
37.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
37.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
37.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
37.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
37.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
37.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
37.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
36.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
36.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
36.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
36.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
36.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
36.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
36.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
36.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
36.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
36.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
36.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
35.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
35.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
35.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
35.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
35.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
35.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
35.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
35.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
35.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
35.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
35.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
35.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
35.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
35.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
35.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
35.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
34.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
34.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
34.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
34.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
34.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
34.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
34.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
34.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
33.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
33.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
33.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
33.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
33.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
33.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
33.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
32.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
32.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
32.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
32.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
32.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
32.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
32.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
31.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
31.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
31.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
31.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
31.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
31.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
30.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
30.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
30.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
30.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
30.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
30.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
30.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
30.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
30.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
29.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
29.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
29.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
29.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
29.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
29.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
28.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
28.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
28.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
28.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
28.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
28.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
28.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
27.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
27.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
27.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
27.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
27.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
27.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
27.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
27.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
26.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
26.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
26.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
26.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
26.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
25.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
25.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
25.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
25.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
24.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
24.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
24.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
24.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
24.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
23.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
23.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
23.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
23.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
23.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
23.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
23.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
22.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
22.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
22.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
22.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
22.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
22.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
22.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
22.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
21.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
21.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
21.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
21.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
21.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
21.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
21.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
21.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
20.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
20.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
20.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
19.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
19.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
19.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
19.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
19.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
19.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
18.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
18.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
18.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
17.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
17.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
17.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
17.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
16.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
16.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
15.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
14.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
13.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
13.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SF1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
59.0
Number of samples
231
Samples
Sample
Description
TPM
DO45249
0 years, male, NA, stage:1, alive, 630 days
119.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
107.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
102.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
100.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
96.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
92.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
92.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
91.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
89.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
87.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
87.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
86.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
85.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
85.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
85.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
83.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
83.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
82.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
81.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
81.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
81.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
80.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
79.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
79.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
79.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
78.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
77.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
77.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
76.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
76.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
75.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
74.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
74.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
74.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
73.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
73.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
73.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
73.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
73.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
73.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
73.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
72.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
72.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
71.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
71.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
71.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
71.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
71.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
71.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
70.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
70.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
70.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
70.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
69.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
69.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
69.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
69.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
68.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
68.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
68.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
68.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
68.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
67.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
67.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
66.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
66.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
66.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
66.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
66.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
66.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
66.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
66.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
65.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
65.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
65.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
65.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
65.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
65.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
65.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
64.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
64.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
64.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
64.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
64.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
64.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
64.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
63.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
63.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
63.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
63.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
63.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
63.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
62.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
62.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
62.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
62.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
62.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
62.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
62.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
61.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
61.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
61.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
60.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
60.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
60.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
60.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
59.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
59.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
59.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
59.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
59.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
58.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
58.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
58.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
58.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
57.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
57.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
57.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
56.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
56.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
56.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
56.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
56.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
56.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
56.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
55.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
55.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
55.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
55.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
54.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
54.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
54.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
54.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
54.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
54.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
54.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
53.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
53.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
53.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
53.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
52.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
52.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
52.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
52.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
52.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
51.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
51.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
51.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
51.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
51.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
51.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
50.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
50.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
50.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
50.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
49.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
49.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
49.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
49.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
49.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
49.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
49.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
48.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
48.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
48.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
48.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
48.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
48.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
48.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
48.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
48.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
48.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
47.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
47.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
47.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
47.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
47.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
46.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
45.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
45.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
45.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
45.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
45.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
45.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
45.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
45.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
44.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
44.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
44.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
44.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
44.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
44.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
44.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
43.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
43.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
43.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
43.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
43.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
42.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
42.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
41.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
41.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
41.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
41.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
40.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
40.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
40.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
40.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
40.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
39.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
39.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
39.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
39.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
38.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
37.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
37.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
37.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
36.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
36.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
35.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
35.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
34.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
34.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
34.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
33.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
33.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
32.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
32.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
30.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
30.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
20.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
661
Tumor
0.6
743
Tumor
0.6
351
Tumor
0.6
285
Tumor
0.6
413
Tumor
0.6
865
Tumor
0.5
965
Tumor
0.5
123
Tumor
0.5
131
Tumor
0.5
112
Tumor
0.5
367
Tumor
0.5
537
Tumor
0.5
967
Tumor
0.5
497
Tumor
0.5
391
Tumor
0.5
443
Tumor
0.5
487
Tumor
0.4
331
Tumor
0.4
427
Tumor
0.4
385
Tumor
0.4
411
Tumor
0.4
517
Tumor
0.4
1021
Tumor
0.4
161
Tumor
0.4
957
Tumor
0.4
535
Tumor
0.4
425
Tumor
0.4
523
Tumor
0.4
533
Tumor
0.4
727
Tumor
0.4
951
Tumor
0.4
1031
Tumor
0.3
431
Tumor
0.3
665
Tumor
0.3
1025
Tumor
0.3
1041
Tumor
0.3
355
Tumor
0.3
977
Tumor
0.3
983
Tumor
0.3
493
Tumor
0.3
447
Tumor
0.3
435
Tumor
0.3
341
Tumor
0.3
375
Tumor
0.3
647
Tumor
0.3
463
Tumor
0.3
221
Tumor
0.3
695
Tumor
0.3
881
Tumor
0.3
211
Tumor
0.2
473
Tumor
0.2
814
Normal
0.2
283
Tumor
0.2
815
Tumor
0.2
943
Tumor
0.2
867
Tumor
0.2
877
Tumor
0.2
471
Tumor
0.2
525
Tumor
0.2
975
Tumor
0.2
113
Tumor
0.2
663
Tumor
0.2
433
Tumor
0.2
467
Tumor
0.2
313
Tumor
0.2
357
Tumor
0.2
217
Tumor
0.2
635
Tumor
0.2
1013
Tumor
0.2
267
Tumor
0.2
817
Tumor
0.2
277
Tumor
0.2
641
Tumor
0.2
573
Tumor
0.2
527
Tumor
0.2
135
Tumor
0.2
465
Tumor
0.2
545
Tumor
0.2
415
Tumor
0.2
923
Tumor
0.2
963
Tumor
0.2
777
Tumor
0.2
1015
Tumor
0.2
685
Tumor
0.2
715
Tumor
0.2
883
Tumor
0.2
451
Tumor
0.2
171
Tumor
0.2
724
Normal
0.2
671
Tumor
0.2
297
Tumor
0.1
455
Tumor
0.1
213
Tumor
0.1
271
Tumor
0.1
483
Tumor
0.1
383
Tumor
0.1
617
Tumor
0.1
387
Tumor
0.1
913
Tumor
0.1
191
Tumor
0.1
737
Tumor
0.1
925
Tumor
0.1
187
Tumor
0.1
125
Tumor
0.1
461
Tumor
0.1
395
Tumor
0.1
444
Normal
0.1
353
Tumor
0.1
515
Tumor
0.1
311
Tumor
0.1
478
Normal
0.1
937
Tumor
0.1
498
Normal
0.1
744
Normal
0.1
261
Tumor
0.1
912
Normal
0.1
127
Tumor
0.1
884
Normal
0.1
231
Tumor
0.1
488
Normal
0.1
873
Tumor
0.1
257
Tumor
0.1
534
Normal
0.1
741
Tumor
0.1
1045
Tumor
0.1
477
Tumor
0.1
185
Tumor
0.1
524
Normal
0.1
141
Tumor
0.1
557
Tumor
0.1
344
Normal
0.1
358
Normal
0.1
396
Normal
0.1
352
Normal
0.1
851
Tumor
0.0
911
Tumor
0.0
615
Tumor
0.0
223
Tumor
0.0
536
Normal
0.0
944
Normal
0.0
1043
Tumor
0.0
456
Normal
0.0
861
Tumor
0.0
394
Normal
0.0
513
Tumor
0.0
742
Normal
0.0
755
Tumor
0.0
137
Tumor
0.0
298
Normal
0.0
384
Normal
0.0
481
Tumor
0.0
863
Tumor
0.0
343
Tumor
0.0
823
Tumor
0.0
921
Tumor
0.0
571
Tumor
0.0
192
Normal
0.0
227
Tumor
0.0
878
Normal
0.0
284
Normal
0.0
966
Normal
0.0
981
Tumor
0.0
196
Normal
0.0
958
Normal
0.0
466
Normal
0.0
232
Normal
0.0
882
Normal
0.0
362
Normal
0.0
195
Tumor
0.0
484
Normal
0.0
363
Tumor
0.0
553
Tumor
0.0
148
Normal
0.0
813
Tumor
0.0
327
Tumor
0.0
361
Tumor
0.0
421
Tumor
0.0
662
Normal
0.0
354
Normal
0.0
314
Normal
0.0
388
Normal
0.0
423
Tumor
0.0
915
Tumor
0.0
954
Normal
0.0
914
Normal
0.0
416
Normal
0.0
628
Normal
0.0
698
Normal
0.0
434
Normal
0.0
114
Normal
0.0
162
Normal
0.0
172
Normal
0.0
492
Normal
0.0
697
Tumor
0.0
858
Normal
0.0
218
Normal
0.0
696
Normal
0.0
976
Normal
0.0
538
Normal
0.0
462
Normal
0.0
922
Normal
0.0
386
Normal
0.0
482
Normal
0.0
955
Tumor
0.0
953
Tumor
0.0
714
Normal
0.0
445
Tumor
0.0
392
Normal
-0.1
436
Normal
-0.1
721
Tumor
-0.1
518
Normal
-0.1
978
Normal
-0.1
145
Tumor
-0.1
568
Normal
-0.1
356
Normal
-0.1
262
Normal
-0.1
111
Normal
-0.1
188
Normal
-0.1
393
Tumor
-0.1
186
Normal
-0.1
376
Normal
-0.1
494
Normal
-0.1
824
Normal
-0.1
818
Normal
-0.1
554
Normal
-0.1
126
Normal
-0.1
312
Normal
-0.1
146
Normal
-0.1
672
Normal
-0.1
472
Normal
-0.1
448
Normal
-0.1
1046
Normal
-0.1
563
Tumor
-0.1
446
Normal
-0.1
468
Normal
-0.1
365
Tumor
-0.1
366
Normal
-0.1
224
Normal
-0.1
412
Normal
-0.1
728
Normal
-0.1
124
Normal
-0.1
546
Normal
-0.1
968
Normal
-0.1
268
Normal
-0.1
1027
Tumor
-0.1
984
Normal
-0.1
464
Normal
-0.1
428
Normal
-0.1
212
Normal
-0.1
564
Normal
-0.1
723
Tumor
-0.1
917
Tumor
-0.1
567
Tumor
-0.1
926
Normal
-0.1
738
Normal
-0.1
214
Normal
-0.1
432
Normal
-0.1
938
Normal
-0.1
514
Normal
-0.1
342
Normal
-0.1
528
Normal
-0.1
866
Normal
-0.1
574
Normal
-0.1
136
Normal
-0.1
864
Normal
-0.1
1016
Normal
-0.1
516
Normal
-0.1
332
Normal
-0.1
1032
Normal
-0.1
916
Normal
-0.1
222
Normal
-0.1
666
Normal
-0.1
286
Normal
-0.1
142
Normal
-0.1
364
Normal
-0.1
636
Normal
-0.1
716
Normal
-0.1
648
Normal
-0.1
228
Normal
-0.1
918
Normal
-0.1
474
Normal
-0.1
258
Normal
-0.1
558
Normal
-0.1
422
Normal
-0.1
572
Normal
-0.1
982
Normal
-0.1
816
Normal
-0.1
272
Normal
-0.1
147
Tumor
-0.1
964
Normal
-0.1
526
Normal
-0.1
857
Tumor
-0.1
664
Normal
-0.1
1042
Normal
-0.1
786
Normal
-0.1
424
Normal
-0.2
1026
Normal
-0.2
686
Normal
-0.2
328
Normal
-0.2
618
Normal
-0.2
1014
Normal
-0.2
785
Tumor
-0.2
722
Normal
-0.2
713
Tumor
-0.2
862
Normal
-0.2
368
Normal
-0.2
414
Normal
-0.2
852
Normal
-0.2
426
Normal
-0.2
452
Normal
-0.2
132
Normal
-0.2
1044
Normal
-0.2
1028
Normal
-0.2
756
Normal
-0.2
778
Normal
-0.2
491
Tumor
-0.2
627
Tumor
-0.2
924
Normal
-0.2
128
Normal
-0.2
868
Normal
-0.2
138
Normal
-0.2
952
Normal
-0.2
874
Normal
-0.2
616
Normal
-0.2
1022
Normal
-0.2
642
Normal
-0.3
956
Normal
-0.3
278
Normal
-0.3
746
Normal
-0.3
745
Tumor
-0.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
