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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FADD is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
191.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
142.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
96.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
50.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
48.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
46.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
36.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
36.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
34.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
33.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
32.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
30.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
29.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
27.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
27.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
26.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
26.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
25.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
25.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
25.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
24.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
23.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
23.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
23.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
22.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
22.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
21.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
21.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
21.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
20.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
20.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
20.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
20.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
20.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
20.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
20.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
19.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
19.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
19.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
19.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
19.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
19.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
19.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
18.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
18.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
18.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
17.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
17.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
17.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
17.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
17.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
17.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
16.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
16.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
16.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
16.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
15.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
14.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
14.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
13.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
13.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
10.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FADD is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.7
Number of samples
231
Samples
Sample
Description
TPM
DO23521
0 years, male, NA, stage:3, alive, 1110 days
70.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
55.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
53.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
34.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
26.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
21.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
21.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
20.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
20.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
20.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
19.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
19.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
18.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
18.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
16.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
16.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
16.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
13.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
12.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
3.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
267
Tumor
2.1
431
Tumor
2.0
445
Tumor
1.6
983
Tumor
1.2
813
Tumor
1.0
873
Tumor
0.8
814
Normal
0.7
135
Tumor
0.7
125
Tumor
0.4
741
Tumor
0.4
527
Tumor
0.3
343
Tumor
0.3
1042
Normal
0.2
426
Normal
0.2
513
Tumor
0.2
455
Tumor
0.2
858
Normal
0.2
358
Normal
0.2
342
Normal
0.2
434
Normal
0.2
1041
Tumor
0.2
232
Normal
0.2
278
Normal
0.2
446
Normal
0.2
817
Tumor
0.2
617
Tumor
0.1
421
Tumor
0.1
344
Normal
0.1
1022
Normal
0.1
367
Tumor
0.1
444
Normal
0.1
361
Tumor
0.1
341
Tumor
0.1
171
Tumor
0.1
968
Normal
0.1
737
Tumor
0.1
436
Normal
0.1
297
Tumor
0.1
113
Tumor
0.1
1026
Normal
0.1
432
Normal
0.1
465
Tumor
0.1
185
Tumor
0.1
1032
Normal
0.1
354
Normal
0.1
186
Normal
0.1
428
Normal
0.1
148
Normal
0.1
314
Normal
0.1
127
Tumor
0.1
424
Normal
0.1
1028
Normal
0.1
271
Tumor
0.1
351
Tumor
0.1
863
Tumor
0.1
187
Tumor
0.1
976
Normal
0.0
365
Tumor
0.0
161
Tumor
0.0
964
Normal
0.0
422
Normal
0.0
414
Normal
0.0
925
Tumor
0.0
573
Tumor
0.0
415
Tumor
0.0
943
Tumor
0.0
1015
Tumor
0.0
648
Normal
0.0
451
Tumor
0.0
635
Tumor
0.0
1014
Normal
0.0
298
Normal
0.0
188
Normal
0.0
911
Tumor
0.0
111
Normal
0.0
824
Normal
0.0
311
Tumor
0.0
383
Tumor
0.0
715
Tumor
0.0
816
Normal
0.0
147
Tumor
0.0
388
Normal
0.0
196
Normal
0.0
128
Normal
0.0
366
Normal
0.0
124
Normal
0.0
427
Tumor
0.0
172
Normal
0.0
777
Tumor
0.0
917
Tumor
0.0
384
Normal
0.0
394
Normal
0.0
375
Tumor
0.0
671
Tumor
0.0
464
Normal
0.0
145
Tumor
0.0
162
Normal
0.0
126
Normal
0.0
391
Tumor
0.0
352
Normal
0.0
963
Tumor
0.0
331
Tumor
0.0
262
Normal
0.0
1016
Normal
-0.1
491
Tumor
-0.1
258
Normal
-0.1
966
Normal
-0.1
627
Tumor
-0.1
368
Normal
-0.1
146
Normal
-0.1
411
Tumor
-0.1
272
Normal
-0.1
362
Normal
-0.1
466
Normal
-0.1
818
Normal
-0.1
224
Normal
-0.1
647
Tumor
-0.1
416
Normal
-0.1
664
Normal
-0.1
313
Tumor
-0.1
642
Normal
-0.1
456
Normal
-0.1
857
Tumor
-0.1
228
Normal
-0.1
498
Normal
-0.1
982
Normal
-0.1
468
Normal
-0.1
443
Tumor
-0.1
666
Normal
-0.1
385
Tumor
-0.1
978
Normal
-0.1
283
Tumor
-0.1
355
Tumor
-0.1
663
Tumor
-0.1
862
Normal
-0.1
138
Normal
-0.1
938
Normal
-0.1
223
Tumor
-0.1
616
Normal
-0.1
745
Tumor
-0.1
363
Tumor
-0.1
364
Normal
-0.1
957
Tumor
-0.1
697
Tumor
-0.1
413
Tumor
-0.1
981
Tumor
-0.1
447
Tumor
-0.1
257
Tumor
-0.1
672
Normal
-0.1
958
Normal
-0.1
914
Normal
-0.1
977
Tumor
-0.1
665
Tumor
-0.1
435
Tumor
-0.1
312
Normal
-0.1
975
Tumor
-0.1
722
Normal
-0.1
852
Normal
-0.1
698
Normal
-0.1
213
Tumor
-0.1
217
Tumor
-0.1
112
Tumor
-0.1
137
Tumor
-0.1
192
Normal
-0.1
546
Normal
-0.1
376
Normal
-0.1
535
Tumor
-0.1
923
Tumor
-0.1
851
Tumor
-0.2
386
Normal
-0.2
395
Tumor
-0.2
1013
Tumor
-0.2
714
Normal
-0.2
277
Tumor
-0.2
353
Tumor
-0.2
525
Tumor
-0.2
357
Tumor
-0.2
912
Normal
-0.2
924
Normal
-0.2
882
Normal
-0.2
915
Tumor
-0.2
984
Normal
-0.2
132
Normal
-0.2
332
Normal
-0.2
423
Tumor
-0.2
874
Normal
-0.2
517
Tumor
-0.2
662
Normal
-0.2
123
Tumor
-0.2
191
Tumor
-0.2
461
Tumor
-0.2
1027
Tumor
-0.2
755
Tumor
-0.2
211
Tumor
-0.2
661
Tumor
-0.2
1025
Tumor
-0.2
567
Tumor
-0.2
463
Tumor
-0.2
482
Normal
-0.2
195
Tumor
-0.2
815
Tumor
-0.2
864
Normal
-0.2
534
Normal
-0.2
114
Normal
-0.2
214
Normal
-0.2
516
Normal
-0.2
1043
Tumor
-0.2
533
Tumor
-0.2
218
Normal
-0.2
716
Normal
-0.2
954
Normal
-0.2
528
Normal
-0.2
478
Normal
-0.2
142
Normal
-0.2
786
Normal
-0.2
392
Normal
-0.2
536
Normal
-0.2
268
Normal
-0.2
393
Tumor
-0.2
944
Normal
-0.2
723
Tumor
-0.2
136
Normal
-0.2
483
Tumor
-0.2
868
Normal
-0.2
472
Normal
-0.2
756
Normal
-0.2
286
Normal
-0.2
488
Normal
-0.2
926
Normal
-0.2
615
Tumor
-0.2
913
Tumor
-0.2
861
Tumor
-0.2
284
Normal
-0.2
523
Tumor
-0.2
738
Normal
-0.2
628
Normal
-0.2
956
Normal
-0.2
1046
Normal
-0.2
396
Normal
-0.3
467
Tumor
-0.3
327
Tumor
-0.3
537
Tumor
-0.3
866
Normal
-0.3
1044
Normal
-0.3
141
Tumor
-0.3
387
Tumor
-0.3
526
Normal
-0.3
222
Normal
-0.3
746
Normal
-0.3
477
Tumor
-0.3
524
Normal
-0.3
452
Normal
-0.3
618
Normal
-0.3
721
Tumor
-0.3
557
Tumor
-0.3
356
Normal
-0.3
221
Tumor
-0.3
952
Normal
-0.3
494
Normal
-0.3
515
Tumor
-0.3
696
Normal
-0.3
823
Tumor
-0.3
686
Normal
-0.3
785
Tumor
-0.3
212
Normal
-0.3
481
Tumor
-0.3
514
Normal
-0.3
484
Normal
-0.3
227
Tumor
-0.3
916
Normal
-0.3
572
Normal
-0.3
328
Normal
-0.3
425
Tumor
-0.3
1045
Tumor
-0.3
433
Tumor
-0.3
231
Tumor
-0.3
412
Normal
-0.3
865
Tumor
-0.3
878
Normal
-0.3
884
Normal
-0.3
571
Tumor
-0.3
487
Tumor
-0.3
881
Tumor
-0.3
554
Normal
-0.4
1031
Tumor
-0.4
474
Normal
-0.4
918
Normal
-0.4
493
Tumor
-0.4
574
Normal
-0.4
563
Tumor
-0.4
131
Tumor
-0.4
742
Normal
-0.4
462
Normal
-0.4
641
Tumor
-0.4
778
Normal
-0.4
744
Normal
-0.4
955
Tumor
-0.4
285
Tumor
-0.4
492
Normal
-0.4
538
Normal
-0.4
867
Tumor
-0.4
713
Tumor
-0.4
261
Tumor
-0.4
1021
Tumor
-0.4
471
Tumor
-0.4
921
Tumor
-0.4
558
Normal
-0.4
636
Normal
-0.4
518
Normal
-0.4
553
Tumor
-0.4
877
Tumor
-0.5
568
Normal
-0.5
564
Normal
-0.5
695
Tumor
-0.5
727
Tumor
-0.5
965
Tumor
-0.5
728
Normal
-0.5
448
Normal
-0.5
545
Tumor
-0.5
937
Tumor
-0.6
724
Normal
-0.6
967
Tumor
-0.6
922
Normal
-0.6
951
Tumor
-0.6
883
Tumor
-0.6
743
Tumor
-0.7
497
Tumor
-0.7
685
Tumor
-0.8
953
Tumor
-0.8
473
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
