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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SDHAF2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
82.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
73.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
66.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
61.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
60.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
53.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
52.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
51.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
50.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
50.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
50.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
50.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
50.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
48.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
48.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
47.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
46.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
46.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
45.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
45.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
45.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
45.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
44.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
43.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
43.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
43.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
42.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
42.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
41.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
41.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
41.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
41.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
41.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
40.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
40.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
40.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
40.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
39.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
39.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
39.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
39.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
39.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
39.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
39.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
39.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
38.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
38.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
38.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
38.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
38.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
38.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
37.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
37.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
37.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
37.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
37.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
37.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
37.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
37.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
37.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
36.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
36.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
36.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
36.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
36.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
36.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
36.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
36.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
36.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
36.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
36.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
36.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
36.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
36.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
35.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
35.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
35.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
35.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
35.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
35.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
34.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
34.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
34.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
34.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
34.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
34.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
34.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
34.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
34.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
34.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
34.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
34.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
33.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
33.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
33.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
33.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
33.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
33.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
33.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
32.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
32.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
32.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
32.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
32.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
31.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
31.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
31.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
31.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
31.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
31.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
31.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
31.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
31.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
31.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
31.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
31.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
31.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
31.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
31.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
31.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
31.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
31.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
31.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
30.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
30.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
30.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
30.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
30.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
30.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
30.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
30.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
30.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
30.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
30.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
29.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
29.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
29.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
29.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
29.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
29.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
29.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
29.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
29.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
29.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
29.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
29.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
29.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
29.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
28.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
28.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
28.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
28.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
28.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
28.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
28.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
28.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
28.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
28.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
28.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
28.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
28.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
28.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
28.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
28.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
28.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
28.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
28.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
28.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
28.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
28.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
27.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
27.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
27.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
27.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
27.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
27.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
27.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
27.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
27.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
27.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
27.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
27.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
27.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
27.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
27.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
27.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
27.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
27.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
27.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
26.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
26.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
26.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
26.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
26.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
26.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
26.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
26.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
26.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
26.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
26.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
26.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
26.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
26.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
26.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
26.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
25.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
25.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
25.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
25.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
25.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
25.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
25.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
25.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
25.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
25.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
25.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
25.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
25.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
25.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
25.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
25.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
24.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
24.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
24.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
24.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
24.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
24.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
24.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
24.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
24.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
24.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
24.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
24.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
24.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
24.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
24.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
24.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
24.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
24.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
24.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
24.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
23.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
23.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
23.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
23.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
23.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
23.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
23.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
23.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
23.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
23.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
23.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
23.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
23.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
23.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
23.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
23.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
23.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
23.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
22.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
22.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
22.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
22.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
22.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
22.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
22.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
22.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
22.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
22.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
22.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
22.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
22.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
22.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
22.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
22.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
21.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
21.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
21.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
21.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
21.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
21.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
21.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
21.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
21.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
20.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
20.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
20.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
20.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
20.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
20.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
20.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
20.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
20.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
20.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
20.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
20.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
20.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
19.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
19.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
19.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
19.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
19.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
19.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
19.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
19.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
19.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
19.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
18.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
18.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
18.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
18.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
18.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
18.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
17.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
17.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
17.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
17.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
16.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
16.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
16.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SDHAF2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.2
Number of samples
231
Samples
Sample
Description
TPM
DO23508
0 years, female, NA, stage:2, alive, 390 days
69.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
54.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
50.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
48.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
47.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
44.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
43.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
42.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
42.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
41.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
41.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
39.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
39.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
38.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
38.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
38.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
37.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
35.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
35.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
35.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
34.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
34.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
34.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
34.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
34.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
33.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
33.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
33.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
33.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
33.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
33.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
32.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
32.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
32.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
32.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
31.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
31.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
30.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
30.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
30.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
30.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
29.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
29.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
29.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
29.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
29.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
29.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
29.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
29.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
28.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
28.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
28.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
28.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
28.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
28.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
28.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
27.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
27.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
27.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
27.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
27.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
27.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
27.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
27.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
27.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
26.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
26.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
26.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
26.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
26.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
26.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
26.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
26.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
26.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
25.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
25.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
25.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
25.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
25.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
25.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
25.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
24.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
24.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
24.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
24.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
24.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
24.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
24.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
24.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
24.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
23.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
23.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
23.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
23.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
23.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
23.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
23.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
23.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
22.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
22.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
22.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
22.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
22.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
22.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
22.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
22.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
22.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
22.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
21.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
21.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
21.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
21.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
21.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
21.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
21.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
20.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
20.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
20.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
19.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
19.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
19.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
19.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
19.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
19.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
19.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
19.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
18.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
17.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
17.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
17.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
17.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
17.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
17.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
17.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
16.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
13.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.8
695
Tumor
1.7
497
Tumor
1.6
491
Tumor
1.4
1013
Tumor
1.3
448
Normal
1.3
1025
Tumor
1.2
716
Normal
1.2
446
Normal
1.2
925
Tumor
1.1
963
Tumor
1.0
777
Tumor
1.0
813
Tumor
1.0
227
Tumor
0.9
1027
Tumor
0.9
195
Tumor
0.9
786
Normal
0.9
671
Tumor
0.9
937
Tumor
0.9
557
Tumor
0.8
278
Normal
0.8
187
Tumor
0.8
537
Tumor
0.8
964
Normal
0.8
785
Tumor
0.7
1046
Normal
0.7
982
Normal
0.7
528
Normal
0.7
112
Tumor
0.7
715
Tumor
0.7
722
Normal
0.7
361
Tumor
0.7
713
Tumor
0.7
1043
Tumor
0.7
465
Tumor
0.7
615
Tumor
0.7
135
Tumor
0.7
817
Tumor
0.7
742
Normal
0.7
525
Tumor
0.7
923
Tumor
0.6
171
Tumor
0.6
481
Tumor
0.6
957
Tumor
0.6
462
Normal
0.6
926
Normal
0.6
186
Normal
0.6
922
Normal
0.6
477
Tumor
0.5
472
Normal
0.5
518
Normal
0.5
523
Tumor
0.5
351
Tumor
0.5
267
Tumor
0.5
421
Tumor
0.5
818
Normal
0.5
533
Tumor
0.5
873
Tumor
0.5
616
Normal
0.4
858
Normal
0.4
864
Normal
0.4
436
Normal
0.4
161
Tumor
0.4
127
Tumor
0.4
938
Normal
0.4
665
Tumor
0.4
137
Tumor
0.4
814
Normal
0.4
967
Tumor
0.4
1014
Normal
0.4
571
Tumor
0.4
284
Normal
0.4
114
Normal
0.4
128
Normal
0.4
686
Normal
0.4
365
Tumor
0.3
344
Normal
0.3
513
Tumor
0.3
723
Tumor
0.3
136
Normal
0.3
1016
Normal
0.3
342
Normal
0.3
618
Normal
0.3
648
Normal
0.3
868
Normal
0.3
913
Tumor
0.3
636
Normal
0.3
912
Normal
0.3
425
Tumor
0.3
482
Normal
0.3
882
Normal
0.3
352
Normal
0.3
862
Normal
0.3
1022
Normal
0.3
297
Tumor
0.3
968
Normal
0.3
951
Tumor
0.3
553
Tumor
0.3
944
Normal
0.3
1032
Normal
0.3
955
Tumor
0.3
966
Normal
0.3
976
Normal
0.3
698
Normal
0.3
484
Normal
0.3
824
Normal
0.3
353
Tumor
0.3
354
Normal
0.3
356
Normal
0.3
697
Tumor
0.2
546
Normal
0.2
358
Normal
0.2
452
Normal
0.2
298
Normal
0.2
851
Tumor
0.2
534
Normal
0.2
447
Tumor
0.2
426
Normal
0.2
416
Normal
0.2
172
Normal
0.2
536
Normal
0.2
641
Tumor
0.2
222
Normal
0.2
884
Normal
0.2
413
Tumor
0.2
756
Normal
0.2
664
Normal
0.2
188
Normal
0.2
958
Normal
0.2
196
Normal
0.2
388
Normal
0.2
526
Normal
0.2
328
Normal
0.2
428
Normal
0.2
984
Normal
0.2
714
Normal
0.2
883
Tumor
0.2
943
Tumor
0.2
617
Tumor
0.1
218
Normal
0.1
1045
Tumor
0.1
368
Normal
0.1
857
Tumor
0.1
363
Tumor
0.1
628
Normal
0.1
1026
Normal
0.1
535
Tumor
0.1
162
Normal
0.1
647
Tumor
0.1
258
Normal
0.1
918
Normal
0.1
126
Normal
0.1
666
Normal
0.1
746
Normal
0.1
924
Normal
0.1
563
Tumor
0.1
564
Normal
0.1
148
Normal
0.1
376
Normal
0.1
466
Normal
0.1
954
Normal
0.1
977
Tumor
0.1
778
Normal
0.1
978
Normal
0.1
816
Normal
0.1
364
Normal
0.1
524
Normal
0.1
464
Normal
0.1
212
Normal
0.1
1021
Tumor
0.1
111
Normal
0.1
852
Normal
0.0
662
Normal
0.0
411
Tumor
0.0
375
Tumor
0.0
214
Normal
0.0
738
Normal
0.0
572
Normal
0.0
332
Normal
0.0
956
Normal
0.0
696
Normal
0.0
367
Tumor
0.0
554
Normal
0.0
467
Tumor
0.0
981
Tumor
0.0
1041
Tumor
0.0
145
Tumor
0.0
394
Normal
0.0
866
Normal
0.0
141
Tumor
0.0
314
Normal
0.0
916
Normal
0.0
221
Tumor
0.0
914
Normal
0.0
1031
Tumor
0.0
424
Normal
0.0
138
Normal
0.0
574
Normal
0.0
744
Normal
0.0
573
Tumor
0.0
228
Normal
0.0
514
Normal
0.0
568
Normal
0.0
146
Normal
0.0
313
Tumor
0.0
366
Normal
0.0
878
Normal
0.0
414
Normal
0.0
953
Tumor
0.0
262
Normal
0.0
217
Tumor
-0.1
558
Normal
-0.1
286
Normal
-0.1
635
Tumor
-0.1
874
Normal
-0.1
917
Tumor
-0.1
1044
Normal
-0.1
396
Normal
-0.1
488
Normal
-0.1
745
Tumor
-0.1
517
Tumor
-0.1
952
Normal
-0.1
721
Tumor
-0.1
471
Tumor
-0.1
1042
Normal
-0.1
422
Normal
-0.1
478
Normal
-0.1
277
Tumor
-0.1
268
Normal
-0.2
132
Normal
-0.2
516
Normal
-0.2
362
Normal
-0.2
921
Tumor
-0.2
257
Tumor
-0.2
538
Normal
-0.2
965
Tumor
-0.2
392
Normal
-0.2
415
Tumor
-0.2
423
Tumor
-0.2
498
Normal
-0.2
527
Tumor
-0.2
672
Normal
-0.2
272
Normal
-0.2
285
Tumor
-0.2
915
Tumor
-0.2
545
Tumor
-0.2
434
Normal
-0.2
412
Normal
-0.2
685
Tumor
-0.2
232
Normal
-0.2
386
Normal
-0.2
474
Normal
-0.2
191
Tumor
-0.2
147
Tumor
-0.2
494
Normal
-0.2
431
Tumor
-0.2
384
Normal
-0.3
728
Normal
-0.3
456
Normal
-0.3
863
Tumor
-0.3
468
Normal
-0.3
823
Tumor
-0.3
741
Tumor
-0.3
724
Normal
-0.3
192
Normal
-0.3
642
Normal
-0.3
124
Normal
-0.3
755
Tumor
-0.3
113
Tumor
-0.3
312
Normal
-0.3
427
Tumor
-0.3
393
Tumor
-0.3
1028
Normal
-0.3
224
Normal
-0.3
975
Tumor
-0.3
142
Normal
-0.4
567
Tumor
-0.4
383
Tumor
-0.4
123
Tumor
-0.4
432
Normal
-0.4
391
Tumor
-0.4
461
Tumor
-0.4
983
Tumor
-0.4
867
Tumor
-0.5
435
Tumor
-0.5
231
Tumor
-0.5
492
Normal
-0.5
515
Tumor
-0.5
815
Tumor
-0.5
185
Tumor
-0.5
743
Tumor
-0.5
433
Tumor
-0.5
355
Tumor
-0.5
327
Tumor
-0.5
213
Tumor
-0.6
271
Tumor
-0.6
911
Tumor
-0.6
131
Tumor
-0.6
861
Tumor
-0.6
451
Tumor
-0.7
444
Normal
-0.7
881
Tumor
-0.7
443
Tumor
-0.7
877
Tumor
-0.7
125
Tumor
-0.7
865
Tumor
-0.7
455
Tumor
-0.7
487
Tumor
-0.7
483
Tumor
-0.7
261
Tumor
-0.7
211
Tumor
-0.8
395
Tumor
-0.8
661
Tumor
-0.8
727
Tumor
-0.8
343
Tumor
-0.9
473
Tumor
-0.9
283
Tumor
-0.9
463
Tumor
-0.9
737
Tumor
-0.9
385
Tumor
-0.9
387
Tumor
-0.9
445
Tumor
-1.0
357
Tumor
-1.0
223
Tumor
-1.0
331
Tumor
-1.1
1015
Tumor
-1.1
663
Tumor
-1.1
341
Tumor
-1.1
493
Tumor
-1.2
311
Tumor
-1.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
