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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SRRM2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
55.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
424.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
243.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
218.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
180.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
170.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
154.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
152.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
146.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
143.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
141.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
140.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
136.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
132.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
132.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
130.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
126.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
121.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
120.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
120.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
120.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
119.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
118.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
118.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
117.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
113.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
112.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
109.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
108.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
104.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
104.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
102.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
100.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
98.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
97.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
97.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
97.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
97.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
96.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
96.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
96.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
96.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
95.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
93.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
92.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
92.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
91.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
90.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
89.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
89.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
88.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
87.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
86.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
85.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
84.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
84.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
83.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
82.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
81.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
80.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
79.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
79.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
79.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
79.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
79.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
77.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
77.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
77.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
76.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
76.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
76.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
76.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
76.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
75.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
75.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
75.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
75.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
74.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
74.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
73.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
73.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
72.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
72.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
71.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
71.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
71.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
71.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
70.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
70.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
70.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
70.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
70.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
69.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
68.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
66.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
66.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
66.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
65.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
65.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
65.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
65.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
64.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
61.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
61.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
61.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
61.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
60.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
60.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
60.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
59.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
59.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
59.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
59.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
59.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
58.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
58.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
58.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
57.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
57.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
56.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
56.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
56.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
56.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
56.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
56.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
56.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
56.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
56.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
56.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
55.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
55.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
54.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
54.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
53.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
53.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
53.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
52.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
51.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
51.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
51.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
51.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
50.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
50.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
50.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
50.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
50.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
50.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
50.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
49.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
49.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
49.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
49.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
49.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
49.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
49.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
49.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
48.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
48.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
48.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
48.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
48.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
48.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
48.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
48.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
48.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
47.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
47.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
47.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
47.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
47.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
47.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
46.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
46.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
46.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
46.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
46.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
46.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
45.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
45.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
45.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
45.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
45.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
45.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
44.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
44.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
44.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
44.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
44.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
44.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
44.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
44.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
44.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
44.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
43.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
43.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
43.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
43.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
43.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
43.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
43.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
43.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
43.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
42.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
42.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
42.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
42.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
42.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
41.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
41.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
41.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
41.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
41.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
40.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
40.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
40.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
40.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
40.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
40.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
40.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
40.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
40.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
40.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
40.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
39.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
39.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
39.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
38.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
38.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
38.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
38.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
38.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
38.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
37.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
37.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
37.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
37.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
37.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
37.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
36.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
36.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
36.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
36.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
36.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
36.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
36.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
35.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
35.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
35.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
35.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
34.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
34.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
34.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
34.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
34.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
34.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
34.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
34.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
34.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
33.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
33.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
33.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
33.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
33.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
33.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
33.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
32.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
32.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
32.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
32.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
32.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
32.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
32.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
32.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
32.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
32.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
32.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
32.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
32.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
31.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
31.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
31.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
31.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
31.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
31.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
31.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
31.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
31.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
30.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
30.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
30.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
30.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
30.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
30.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
30.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
30.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
30.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
30.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
30.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
30.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
30.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
30.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
29.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
29.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
29.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
29.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
29.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
28.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
28.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
28.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
28.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
28.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
27.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
27.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
27.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
27.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
27.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
27.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
26.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
26.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
26.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
26.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
26.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
26.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
26.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
25.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
25.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
25.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
25.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
24.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
24.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
24.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
24.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
24.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
24.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
23.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
23.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
23.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
23.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
23.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
23.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
22.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
21.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
21.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
21.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
21.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
20.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
20.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
17.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SRRM2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
75.0
Number of samples
231
Samples
Sample
Description
TPM
DO45185
0 years, male, NA, stage:2, alive, 600 days
287.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
217.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
209.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
182.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
176.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
169.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
166.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
158.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
157.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
154.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
152.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
152.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
149.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
148.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
147.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
145.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
144.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
143.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
136.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
135.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
135.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
132.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
131.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
131.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
130.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
128.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
128.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
127.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
126.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
124.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
124.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
123.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
123.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
122.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
120.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
119.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
119.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
115.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
114.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
114.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
111.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
110.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
110.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
109.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
108.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
106.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
106.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
106.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
105.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
103.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
102.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
102.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
101.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
101.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
99.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
99.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
99.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
98.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
98.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
98.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
98.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
97.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
96.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
96.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
95.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
94.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
94.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
94.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
93.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
93.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
91.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
91.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
90.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
90.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
88.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
87.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
87.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
87.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
84.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
84.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
84.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
82.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
82.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
81.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
81.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
81.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
79.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
79.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
79.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
78.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
78.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
77.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
75.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
75.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
75.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
75.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
75.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
74.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
74.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
74.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
74.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
73.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
73.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
72.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
72.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
71.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
71.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
70.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
70.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
70.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
69.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
69.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
68.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
67.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
67.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
66.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
66.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
65.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
65.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
65.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
65.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
64.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
64.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
64.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
63.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
63.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
63.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
62.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
61.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
61.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
60.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
60.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
59.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
59.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
59.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
59.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
59.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
58.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
57.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
57.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
57.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
57.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
57.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
56.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
56.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
56.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
56.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
56.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
56.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
55.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
54.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
53.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
52.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
52.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
52.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
51.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
50.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
49.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
49.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
48.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
47.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
47.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
46.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
46.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
46.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
45.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
45.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
45.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
45.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
44.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
44.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
44.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
44.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
43.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
43.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
42.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
42.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
42.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
42.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
41.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
41.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
41.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
40.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
40.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
39.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
39.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
38.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
38.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
37.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
37.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
37.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
36.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
36.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
36.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
35.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
35.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
34.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
32.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
31.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
31.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
31.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
31.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
30.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
30.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
28.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
27.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
27.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
26.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
26.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
26.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
26.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
26.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
25.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
24.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
24.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
24.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
23.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
22.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
22.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
17.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
17.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
16.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
967
Tumor
1.0
965
Tumor
0.9
937
Tumor
0.9
533
Tumor
0.9
1013
Tumor
0.9
957
Tumor
0.8
663
Tumor
0.8
535
Tumor
0.8
977
Tumor
0.8
497
Tumor
0.7
211
Tumor
0.6
743
Tumor
0.6
351
Tumor
0.6
665
Tumor
0.6
285
Tumor
0.6
487
Tumor
0.6
695
Tumor
0.6
413
Tumor
0.6
331
Tumor
0.6
131
Tumor
0.5
983
Tumor
0.5
943
Tumor
0.5
724
Normal
0.5
865
Tumor
0.5
473
Tumor
0.5
355
Tumor
0.5
951
Tumor
0.5
963
Tumor
0.5
313
Tumor
0.5
537
Tumor
0.5
647
Tumor
0.4
545
Tumor
0.4
571
Tumor
0.4
267
Tumor
0.4
851
Tumor
0.4
1021
Tumor
0.4
777
Tumor
0.4
525
Tumor
0.4
411
Tumor
0.4
493
Tumor
0.4
191
Tumor
0.4
715
Tumor
0.4
1041
Tumor
0.4
465
Tumor
0.4
297
Tumor
0.4
447
Tumor
0.4
523
Tumor
0.4
363
Tumor
0.4
881
Tumor
0.4
883
Tumor
0.3
431
Tumor
0.3
341
Tumor
0.3
483
Tumor
0.3
975
Tumor
0.3
391
Tumor
0.3
915
Tumor
0.3
685
Tumor
0.3
227
Tumor
0.3
861
Tumor
0.3
171
Tumor
0.3
925
Tumor
0.3
385
Tumor
0.3
481
Tumor
0.3
1031
Tumor
0.3
527
Tumor
0.3
517
Tumor
0.3
161
Tumor
0.3
955
Tumor
0.3
135
Tumor
0.3
661
Tumor
0.3
1025
Tumor
0.3
415
Tumor
0.3
467
Tumor
0.3
785
Tumor
0.3
113
Tumor
0.3
477
Tumor
0.3
923
Tumor
0.3
427
Tumor
0.3
913
Tumor
0.3
857
Tumor
0.3
395
Tumor
0.3
425
Tumor
0.3
741
Tumor
0.3
635
Tumor
0.2
814
Normal
0.2
357
Tumor
0.2
536
Normal
0.2
383
Tumor
0.2
911
Tumor
0.2
217
Tumor
0.2
221
Tumor
0.2
557
Tumor
0.2
573
Tumor
0.2
231
Tumor
0.2
813
Tumor
0.2
953
Tumor
0.2
553
Tumor
0.2
455
Tumor
0.2
451
Tumor
0.2
984
Normal
0.2
641
Tumor
0.2
112
Tumor
0.2
223
Tumor
0.2
187
Tumor
0.2
563
Tumor
0.2
393
Tumor
0.2
145
Tumor
0.2
873
Tumor
0.2
484
Normal
0.2
917
Tumor
0.2
815
Tumor
0.2
617
Tumor
0.2
921
Tumor
0.2
877
Tumor
0.2
958
Normal
0.2
538
Normal
0.2
1015
Tumor
0.2
375
Tumor
0.2
966
Normal
0.2
867
Tumor
0.2
627
Tumor
0.2
328
Normal
0.2
498
Normal
0.1
463
Tumor
0.1
365
Tumor
0.1
433
Tumor
0.1
488
Normal
0.1
277
Tumor
0.1
727
Tumor
0.1
737
Tumor
0.1
671
Tumor
0.1
554
Normal
0.1
515
Tumor
0.1
361
Tumor
0.1
141
Tumor
0.1
492
Normal
0.1
697
Tumor
0.1
721
Tumor
0.1
546
Normal
0.1
327
Tumor
0.1
755
Tumor
0.1
461
Tumor
0.1
978
Normal
0.1
195
Tumor
0.1
123
Tumor
0.1
534
Normal
0.1
924
Normal
0.1
922
Normal
0.1
756
Normal
0.1
353
Tumor
0.1
817
Tumor
0.1
852
Normal
0.1
387
Tumor
0.1
567
Tumor
0.1
1014
Normal
0.1
1042
Normal
0.1
1028
Normal
0.1
976
Normal
0.1
423
Tumor
0.1
636
Normal
0.1
472
Normal
0.1
713
Tumor
0.0
982
Normal
0.0
471
Tumor
0.0
311
Tumor
0.0
572
Normal
0.0
1032
Normal
0.0
968
Normal
0.0
283
Tumor
0.0
714
Normal
0.0
416
Normal
0.0
491
Tumor
0.0
261
Tumor
0.0
981
Tumor
0.0
858
Normal
0.0
271
Tumor
0.0
944
Normal
0.0
478
Normal
0.0
524
Normal
0.0
513
Tumor
0.0
918
Normal
0.0
494
Normal
0.0
628
Normal
0.0
823
Tumor
0.0
312
Normal
0.0
818
Normal
0.0
127
Tumor
0.0
1022
Normal
0.0
284
Normal
0.0
938
Normal
0.0
212
Normal
0.0
138
Normal
0.0
954
Normal
0.0
412
Normal
0.0
286
Normal
0.0
1044
Normal
0.0
964
Normal
0.0
916
Normal
0.0
528
Normal
0.0
662
Normal
0.0
1026
Normal
0.0
224
Normal
0.0
278
Normal
0.0
648
Normal
0.0
298
Normal
0.0
664
Normal
0.0
666
Normal
0.0
564
Normal
0.0
172
Normal
0.0
188
Normal
0.0
716
Normal
0.0
526
Normal
0.0
482
Normal
0.0
228
Normal
0.0
445
Tumor
0.0
738
Normal
0.0
468
Normal
0.0
742
Normal
0.0
866
Normal
0.0
332
Normal
0.0
952
Normal
0.0
786
Normal
0.0
746
Normal
0.0
426
Normal
0.0
882
Normal
0.0
926
Normal
0.0
142
Normal
0.0
132
Normal
0.0
744
Normal
0.0
878
Normal
0.0
696
Normal
0.0
192
Normal
0.0
816
Normal
0.0
874
Normal
0.0
642
Normal
0.0
884
Normal
0.0
728
Normal
0.0
367
Tumor
0.0
343
Tumor
0.0
364
Normal
0.0
396
Normal
0.0
148
Normal
0.0
137
Tumor
0.0
232
Normal
0.0
218
Normal
0.0
558
Normal
0.0
745
Tumor
0.0
824
Normal
0.0
518
Normal
0.0
1043
Tumor
0.0
686
Normal
0.0
1046
Normal
0.0
368
Normal
-0.1
568
Normal
-0.1
162
Normal
-0.1
672
Normal
-0.1
146
Normal
-0.1
434
Normal
-0.1
574
Normal
-0.1
474
Normal
-0.1
448
Normal
-0.1
462
Normal
-0.1
516
Normal
-0.1
444
Normal
-0.1
1016
Normal
-0.1
912
Normal
-0.1
422
Normal
-0.1
864
Normal
-0.1
268
Normal
-0.1
443
Tumor
-0.1
213
Tumor
-0.1
186
Normal
-0.1
868
Normal
-0.1
698
Normal
-0.1
421
Tumor
-0.1
452
Normal
-0.1
314
Normal
-0.1
723
Tumor
-0.1
722
Normal
-0.1
185
Tumor
-0.1
778
Normal
-0.1
386
Normal
-0.1
424
Normal
-0.1
384
Normal
-0.1
435
Tumor
-0.1
1027
Tumor
-0.1
862
Normal
-0.1
222
Normal
-0.1
262
Normal
-0.1
956
Normal
-0.1
514
Normal
-0.1
362
Normal
-0.1
136
Normal
-0.1
257
Tumor
-0.1
366
Normal
-0.1
356
Normal
-0.1
428
Normal
-0.2
196
Normal
-0.2
618
Normal
-0.2
147
Tumor
-0.2
616
Normal
-0.2
446
Normal
-0.2
456
Normal
-0.2
376
Normal
-0.2
125
Tumor
-0.2
352
Normal
-0.2
615
Tumor
-0.2
466
Normal
-0.2
392
Normal
-0.2
414
Normal
-0.2
258
Normal
-0.2
914
Normal
-0.2
272
Normal
-0.2
388
Normal
-0.2
436
Normal
-0.2
214
Normal
-0.2
354
Normal
-0.2
863
Tumor
-0.2
464
Normal
-0.2
344
Normal
-0.2
394
Normal
-0.3
126
Normal
-0.3
358
Normal
-0.3
1045
Tumor
-0.3
342
Normal
-0.3
124
Normal
-0.3
114
Normal
-0.3
432
Normal
-0.4
111
Normal
-0.4
128
Normal
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
