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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MLST8 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
60.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
59.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
55.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
48.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
47.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
46.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
46.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
46.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
46.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
45.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
45.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
45.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
45.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
43.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
43.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
43.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
43.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
41.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
41.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
40.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
39.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
39.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
37.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
37.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
37.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
36.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
36.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
36.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
36.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
36.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
35.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
35.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
35.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
35.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
34.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
34.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
34.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
34.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
33.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
33.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
33.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
33.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
33.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
33.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
33.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
32.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
32.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
32.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
32.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
32.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
32.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
32.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
31.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
31.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
31.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
31.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
31.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
31.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
31.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
31.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
30.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
30.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
30.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
30.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
30.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
30.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
30.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
29.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
29.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
29.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
29.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
29.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
28.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
28.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
28.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
28.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
28.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
28.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
28.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
28.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
27.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
27.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
27.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
27.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
27.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
27.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
27.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
27.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
26.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
26.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
26.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
26.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
26.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
26.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
26.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
26.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
26.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
26.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
25.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
25.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
25.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
25.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
25.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
25.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
25.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
25.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
25.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
25.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
25.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
25.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
25.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
24.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
24.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
24.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
24.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
24.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
24.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
24.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
24.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
23.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
23.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
23.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
23.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
23.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
23.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
23.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
23.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
23.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
22.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
22.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
22.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
22.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
22.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
22.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
22.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
22.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
22.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
22.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
22.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
22.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
22.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
22.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
22.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
22.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
22.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
22.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
21.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
21.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
21.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
21.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
21.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
21.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
21.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
21.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
21.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
21.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
21.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
21.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
21.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
21.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
21.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
21.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
21.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
21.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
21.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
21.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
21.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
21.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
20.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
20.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
20.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
20.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
20.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
20.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
20.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
20.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
20.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
20.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
20.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
20.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
20.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
19.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
19.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
19.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
19.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
19.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
19.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
19.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
19.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
19.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
19.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
18.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
18.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
18.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
18.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
18.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
18.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
18.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
18.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
18.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
18.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
18.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
18.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
18.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
18.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
18.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
17.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
17.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
17.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
17.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
17.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
17.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
17.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
17.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
17.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
17.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
16.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
16.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
16.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
16.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
15.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
15.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
15.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
15.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
14.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
14.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
14.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
13.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
12.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MLST8 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.0
Number of samples
231
Samples
Sample
Description
TPM
DO23540
0 years, male, NA, stage:1, alive, 750 days
69.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
58.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
48.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
40.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
38.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
38.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
35.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
34.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
34.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
32.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
32.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
31.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
31.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
31.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
30.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
30.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
30.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
30.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
29.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
29.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
29.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
29.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
28.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
28.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
28.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
28.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
28.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
27.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
27.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
27.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
26.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
26.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
25.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
25.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
25.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
25.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
25.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
25.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
25.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
25.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
24.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
24.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
23.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
23.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
23.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
23.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
22.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
22.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
22.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
22.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
22.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
21.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
21.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
21.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
21.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
20.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
20.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
20.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
20.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
20.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
19.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
19.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
19.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
19.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
19.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
19.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
19.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
18.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
18.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
18.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
17.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
16.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
16.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
12.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
0.7
741
Tumor
0.7
981
Tumor
0.6
1013
Tumor
0.5
745
Tumor
0.5
267
Tumor
0.5
491
Tumor
0.5
258
Normal
0.5
573
Tumor
0.4
635
Tumor
0.4
171
Tumor
0.4
262
Normal
0.4
465
Tumor
0.3
268
Normal
0.3
353
Tumor
0.3
186
Normal
0.3
445
Tumor
0.3
423
Tumor
0.3
395
Tumor
0.3
278
Normal
0.3
737
Tumor
0.3
431
Tumor
0.3
937
Tumor
0.3
777
Tumor
0.3
695
Tumor
0.3
451
Tumor
0.3
867
Tumor
0.3
271
Tumor
0.3
568
Normal
0.3
425
Tumor
0.2
147
Tumor
0.2
487
Tumor
0.2
564
Normal
0.2
221
Tumor
0.2
361
Tumor
0.2
1015
Tumor
0.2
525
Tumor
0.2
813
Tumor
0.2
1021
Tumor
0.2
352
Normal
0.2
354
Normal
0.2
558
Normal
0.2
572
Normal
0.2
858
Normal
0.2
272
Normal
0.2
785
Tumor
0.2
213
Tumor
0.2
443
Tumor
0.2
816
Normal
0.2
112
Tumor
0.2
538
Normal
0.2
393
Tumor
0.2
1025
Tumor
0.2
1027
Tumor
0.2
523
Tumor
0.2
515
Tumor
0.2
685
Tumor
0.2
755
Tumor
0.2
218
Normal
0.2
953
Tumor
0.2
172
Normal
0.2
433
Tumor
0.2
473
Tumor
0.1
824
Normal
0.1
746
Normal
0.1
448
Normal
0.1
125
Tumor
0.1
527
Tumor
0.1
727
Tumor
0.1
537
Tumor
0.1
554
Normal
0.1
513
Tumor
0.1
497
Tumor
0.1
222
Normal
0.1
865
Tumor
0.1
977
Tumor
0.1
232
Normal
0.1
344
Normal
0.1
188
Normal
0.1
231
Tumor
0.1
861
Tumor
0.1
743
Tumor
0.1
452
Normal
0.1
477
Tumor
0.1
113
Tumor
0.1
383
Tumor
0.1
823
Tumor
0.1
698
Normal
0.1
283
Tumor
0.1
915
Tumor
0.1
925
Tumor
0.1
976
Normal
0.1
926
Normal
0.1
952
Normal
0.1
954
Normal
0.1
162
Normal
0.1
191
Tumor
0.1
357
Tumor
0.1
545
Tumor
0.1
141
Tumor
0.1
261
Tumor
0.1
964
Normal
0.1
367
Tumor
0.1
196
Normal
0.1
148
Normal
0.1
571
Tumor
0.1
211
Tumor
0.0
967
Tumor
0.0
366
Normal
0.0
187
Tumor
0.0
257
Tumor
0.0
944
Normal
0.0
911
Tumor
0.0
466
Normal
0.0
518
Normal
0.0
574
Normal
0.0
391
Tumor
0.0
534
Normal
0.0
483
Tumor
0.0
815
Tumor
0.0
492
Normal
0.0
484
Normal
0.0
217
Tumor
0.0
412
Normal
0.0
744
Normal
0.0
924
Normal
0.0
192
Normal
0.0
493
Tumor
0.0
411
Tumor
0.0
132
Normal
0.0
376
Normal
0.0
553
Tumor
0.0
918
Normal
0.0
1041
Tumor
0.0
456
Normal
0.0
214
Normal
0.0
185
Tumor
0.0
432
Normal
0.0
873
Tumor
0.0
921
Tumor
0.0
464
Normal
0.0
468
Normal
0.0
955
Tumor
0.0
343
Tumor
0.0
557
Tumor
0.0
461
Tumor
0.0
341
Tumor
0.0
526
Normal
0.0
923
Tumor
0.0
434
Normal
0.0
446
Normal
0.0
647
Tumor
0.0
818
Normal
0.0
161
Tumor
0.0
385
Tumor
0.0
874
Normal
0.0
435
Tumor
0.0
528
Normal
0.0
883
Tumor
0.0
778
Normal
0.0
462
Normal
0.0
866
Normal
0.0
365
Tumor
0.0
368
Normal
0.0
864
Normal
0.0
738
Normal
0.0
463
Tumor
-0.1
351
Tumor
-0.1
567
Tumor
-0.1
968
Normal
-0.1
951
Tumor
-0.1
436
Normal
-0.1
857
Tumor
-0.1
1043
Tumor
-0.1
313
Tumor
-0.1
342
Normal
-0.1
223
Tumor
-0.1
982
Normal
-0.1
358
Normal
-0.1
1045
Tumor
-0.1
742
Normal
-0.1
956
Normal
-0.1
297
Tumor
-0.1
878
Normal
-0.1
966
Normal
-0.1
756
Normal
-0.1
546
Normal
-0.1
1016
Normal
-0.1
114
Normal
-0.1
1014
Normal
-0.1
363
Tumor
-0.1
958
Normal
-0.1
663
Tumor
-0.1
123
Tumor
-0.1
356
Normal
-0.1
862
Normal
-0.1
648
Normal
-0.1
195
Tumor
-0.1
697
Tumor
-0.1
817
Tumor
-0.1
136
Normal
-0.1
814
Normal
-0.1
916
Normal
-0.1
355
Tumor
-0.1
311
Tumor
-0.1
285
Tumor
-0.1
124
Normal
-0.1
362
Normal
-0.1
277
Tumor
-0.1
723
Tumor
-0.1
938
Normal
-0.1
728
Normal
-0.1
517
Tumor
-0.1
696
Normal
-0.1
488
Normal
-0.1
471
Tumor
-0.1
472
Normal
-0.1
975
Tumor
-0.1
516
Normal
-0.1
627
Tumor
-0.1
386
Normal
-0.1
142
Normal
-0.1
524
Normal
-0.1
444
Normal
-0.1
852
Normal
-0.1
127
Tumor
-0.1
332
Normal
-0.1
913
Tumor
-0.1
474
Normal
-0.1
984
Normal
-0.1
786
Normal
-0.1
1028
Normal
-0.1
422
Normal
-0.2
131
Tumor
-0.2
327
Tumor
-0.2
414
Normal
-0.2
978
Normal
-0.2
922
Normal
-0.2
664
Normal
-0.2
1046
Normal
-0.2
963
Tumor
-0.2
563
Tumor
-0.2
111
Normal
-0.2
536
Normal
-0.2
482
Normal
-0.2
714
Normal
-0.2
851
Tumor
-0.2
957
Tumor
-0.2
396
Normal
-0.2
661
Tumor
-0.2
286
Normal
-0.2
943
Tumor
-0.2
375
Tumor
-0.2
881
Tumor
-0.2
494
Normal
-0.2
284
Normal
-0.2
1031
Tumor
-0.2
426
Normal
-0.2
1026
Normal
-0.2
228
Normal
-0.2
965
Tumor
-0.2
467
Tumor
-0.2
328
Normal
-0.2
455
Tumor
-0.2
421
Tumor
-0.2
863
Tumor
-0.2
428
Normal
-0.2
983
Tumor
-0.2
615
Tumor
-0.2
392
Normal
-0.2
498
Normal
-0.2
424
Normal
-0.2
146
Normal
-0.2
387
Tumor
-0.2
126
Normal
-0.2
672
Normal
-0.2
868
Normal
-0.2
128
Normal
-0.2
212
Normal
-0.3
413
Tumor
-0.3
662
Normal
-0.3
364
Normal
-0.3
686
Normal
-0.3
722
Normal
-0.3
416
Normal
-0.3
1044
Normal
-0.3
384
Normal
-0.3
912
Normal
-0.3
312
Normal
-0.3
882
Normal
-0.3
447
Tumor
-0.3
394
Normal
-0.3
427
Tumor
-0.3
671
Tumor
-0.3
298
Normal
-0.3
914
Normal
-0.3
724
Normal
-0.3
666
Normal
-0.3
665
Tumor
-0.3
917
Tumor
-0.3
137
Tumor
-0.3
884
Normal
-0.3
227
Tumor
-0.3
478
Normal
-0.3
481
Tumor
-0.3
224
Normal
-0.3
135
Tumor
-0.3
877
Tumor
-0.4
145
Tumor
-0.4
1022
Normal
-0.4
716
Normal
-0.4
314
Normal
-0.4
388
Normal
-0.4
138
Normal
-0.4
331
Tumor
-0.4
415
Tumor
-0.4
1042
Normal
-0.4
535
Tumor
-0.4
715
Tumor
-0.5
617
Tumor
-0.5
642
Normal
-0.5
618
Normal
-0.5
636
Normal
-0.6
514
Normal
-0.6
713
Tumor
-0.6
641
Tumor
-0.6
1032
Normal
-0.6
721
Tumor
-0.7
616
Normal
-0.7
628
Normal
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
