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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FAM234A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
31.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
144.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
112.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
98.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
93.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
92.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
90.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
86.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
82.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
82.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
80.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
76.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
71.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
70.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
70.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
68.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
64.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
64.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
62.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
61.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
60.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
59.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
58.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
56.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
56.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
54.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
54.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
53.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
53.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
52.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
51.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
51.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
49.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
49.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
49.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
48.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
47.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
47.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
47.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
47.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
47.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
46.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
46.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
45.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
45.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
45.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
45.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
45.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
44.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
44.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
43.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
43.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
43.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
43.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
43.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
43.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
41.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
41.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
41.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
41.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
41.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
40.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
40.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
40.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
40.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
40.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
40.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
40.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
40.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
40.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
39.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
39.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
39.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
39.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
38.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
38.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
38.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
38.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
37.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
37.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
37.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
37.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
37.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
37.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
36.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
36.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
36.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
36.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
36.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
36.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
36.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
35.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
35.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
35.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
35.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
35.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
35.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
35.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
35.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
34.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
34.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
34.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
34.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
34.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
34.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
34.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
34.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
34.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
34.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
34.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
34.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
34.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
33.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
33.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
33.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
33.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
33.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
33.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
33.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
33.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
33.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
33.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
32.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
32.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
32.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
32.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
32.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
32.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
32.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
32.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
32.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
31.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
31.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
31.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
31.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
31.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
31.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
31.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
31.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
31.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
31.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
31.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
31.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
30.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
30.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
30.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
30.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
30.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
30.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
30.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
30.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
30.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
30.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
30.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
30.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
30.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
30.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
30.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
29.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
29.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
29.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
29.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
29.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
29.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
29.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
29.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
29.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
29.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
29.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
29.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
29.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
29.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
29.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
28.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
28.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
28.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
28.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
28.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
28.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
28.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
28.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
28.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
28.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
28.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
28.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
28.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
28.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
28.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
28.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
27.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
27.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
27.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
27.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
27.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
27.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
27.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
27.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
27.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
26.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
26.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
26.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
26.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
26.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
26.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
26.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
26.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
26.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
26.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
26.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
26.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
26.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
26.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
26.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
25.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
25.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
25.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
25.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
25.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
25.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
25.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
25.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
24.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
24.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
24.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
24.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
24.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
24.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
24.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
24.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
24.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
24.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
24.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
24.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
23.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
23.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
23.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
23.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
23.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
23.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
23.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
23.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
22.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
22.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
22.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
22.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
22.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
22.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
22.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
22.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
22.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
22.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
21.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
21.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
21.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
21.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
21.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
21.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
21.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
21.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
21.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
20.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
20.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
20.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
20.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
20.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
20.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
20.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
20.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
20.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
20.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
20.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
20.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
20.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
19.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
19.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
19.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
19.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
19.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
19.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
19.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
19.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
19.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
19.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
19.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
19.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
18.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
18.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
17.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
17.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
17.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
17.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
17.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
17.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
17.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
16.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
16.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
16.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
16.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
15.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
15.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
15.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
15.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
14.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
14.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
12.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
5.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
2.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
2.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
112
Tumor
1.1
465
Tumor
0.9
571
Tumor
0.8
171
Tumor
0.8
481
Tumor
0.7
473
Tumor
0.7
635
Tumor
0.6
615
Tumor
0.6
513
Tumor
0.6
568
Normal
0.6
824
Normal
0.6
714
Normal
0.6
937
Tumor
0.6
1041
Tumor
0.5
911
Tumor
0.5
526
Normal
0.5
741
Tumor
0.5
1015
Tumor
0.5
462
Normal
0.5
267
Tumor
0.5
488
Normal
0.5
484
Normal
0.5
482
Normal
0.5
365
Tumor
0.5
695
Tumor
0.5
564
Normal
0.5
636
Normal
0.5
445
Tumor
0.5
977
Tumor
0.4
231
Tumor
0.4
328
Normal
0.4
368
Normal
0.4
715
Tumor
0.4
1022
Normal
0.4
196
Normal
0.4
428
Normal
0.4
258
Normal
0.4
446
Normal
0.4
433
Tumor
0.4
327
Tumor
0.4
967
Tumor
0.4
861
Tumor
0.4
867
Tumor
0.4
1028
Normal
0.4
286
Normal
0.4
432
Normal
0.4
574
Normal
0.4
436
Normal
0.4
858
Normal
0.4
648
Normal
0.4
722
Normal
0.4
686
Normal
0.4
914
Normal
0.4
356
Normal
0.4
148
Normal
0.4
344
Normal
0.4
172
Normal
0.4
516
Normal
0.4
257
Tumor
0.3
868
Normal
0.3
232
Normal
0.3
358
Normal
0.3
361
Tumor
0.3
218
Normal
0.3
627
Tumor
0.3
1046
Normal
0.3
616
Normal
0.3
642
Normal
0.3
518
Normal
0.3
786
Normal
0.3
466
Normal
0.3
922
Normal
0.3
111
Normal
0.3
376
Normal
0.3
527
Tumor
0.3
884
Normal
0.3
162
Normal
0.3
132
Normal
0.3
723
Tumor
0.3
1045
Tumor
0.3
816
Normal
0.3
487
Tumor
0.3
964
Normal
0.3
464
Normal
0.3
426
Normal
0.3
515
Tumor
0.3
212
Normal
0.3
912
Normal
0.2
342
Normal
0.2
448
Normal
0.2
618
Normal
0.2
572
Normal
0.2
554
Normal
0.2
298
Normal
0.2
1042
Normal
0.2
696
Normal
0.2
416
Normal
0.2
128
Normal
0.2
186
Normal
0.2
394
Normal
0.2
136
Normal
0.2
1026
Normal
0.2
396
Normal
0.2
472
Normal
0.2
984
Normal
0.2
778
Normal
0.2
785
Tumor
0.2
963
Tumor
0.2
272
Normal
0.2
227
Tumor
0.2
262
Normal
0.2
954
Normal
0.2
314
Normal
0.2
357
Tumor
0.2
412
Normal
0.2
332
Normal
0.2
818
Normal
0.2
451
Tumor
0.2
424
Normal
0.2
862
Normal
0.2
968
Normal
0.2
393
Tumor
0.2
955
Tumor
0.2
1032
Normal
0.2
878
Normal
0.2
866
Normal
0.2
456
Normal
0.2
698
Normal
0.2
1014
Normal
0.2
924
Normal
0.2
353
Tumor
0.2
222
Normal
0.2
534
Normal
0.2
514
Normal
0.2
944
Normal
0.2
756
Normal
0.2
463
Tumor
0.1
777
Tumor
0.1
517
Tumor
0.1
493
Tumor
0.1
423
Tumor
0.1
666
Normal
0.1
981
Tumor
0.1
742
Normal
0.1
415
Tumor
0.1
366
Normal
0.1
918
Normal
0.1
228
Normal
0.1
716
Normal
0.1
523
Tumor
0.1
352
Normal
0.1
738
Normal
0.1
422
Normal
0.1
982
Normal
0.1
364
Normal
0.1
938
Normal
0.1
1044
Normal
0.1
873
Tumor
0.1
1016
Normal
0.1
926
Normal
0.1
388
Normal
0.1
142
Normal
0.1
864
Normal
0.1
915
Tumor
0.1
533
Tumor
0.1
468
Normal
0.1
138
Normal
0.1
976
Normal
0.1
558
Normal
0.1
628
Normal
0.1
744
Normal
0.1
528
Normal
0.1
617
Tumor
0.1
882
Normal
0.1
387
Tumor
0.1
863
Tumor
0.0
392
Normal
0.0
746
Normal
0.0
685
Tumor
0.0
284
Normal
0.0
367
Tumor
0.0
728
Normal
0.0
664
Normal
0.0
414
Normal
0.0
278
Normal
0.0
952
Normal
0.0
745
Tumor
0.0
498
Normal
0.0
341
Tumor
0.0
956
Normal
0.0
444
Normal
0.0
813
Tumor
0.0
354
Normal
0.0
313
Tumor
0.0
474
Normal
0.0
546
Normal
0.0
268
Normal
0.0
312
Normal
0.0
978
Normal
0.0
647
Tumor
0.0
386
Normal
0.0
737
Tumor
0.0
126
Normal
0.0
391
Tumor
0.0
494
Normal
0.0
127
Tumor
0.0
195
Tumor
0.0
285
Tumor
0.0
925
Tumor
0.0
958
Normal
0.0
913
Tumor
0.0
563
Tumor
0.0
916
Normal
0.0
492
Normal
0.0
852
Normal
0.0
188
Normal
0.0
362
Normal
0.0
187
Tumor
0.0
538
Normal
0.0
214
Normal
-0.1
135
Tumor
-0.1
535
Tumor
-0.1
114
Normal
-0.1
755
Tumor
-0.1
874
Normal
-0.1
434
Normal
-0.1
261
Tumor
-0.1
461
Tumor
-0.1
384
Normal
-0.1
192
Normal
-0.1
721
Tumor
-0.1
452
Normal
-0.1
224
Normal
-0.1
524
Normal
-0.1
662
Normal
-0.1
814
Normal
-0.1
536
Normal
-0.1
413
Tumor
-0.1
421
Tumor
-0.2
697
Tumor
-0.2
191
Tumor
-0.2
665
Tumor
-0.2
567
Tumor
-0.2
435
Tumor
-0.2
557
Tumor
-0.2
146
Normal
-0.2
966
Normal
-0.2
447
Tumor
-0.2
857
Tumor
-0.2
431
Tumor
-0.2
411
Tumor
-0.2
497
Tumor
-0.2
124
Normal
-0.3
917
Tumor
-0.3
672
Normal
-0.3
355
Tumor
-0.3
271
Tumor
-0.3
147
Tumor
-0.3
185
Tumor
-0.3
363
Tumor
-0.3
297
Tumor
-0.3
943
Tumor
-0.3
343
Tumor
-0.3
923
Tumor
-0.3
573
Tumor
-0.3
1013
Tumor
-0.3
455
Tumor
-0.4
953
Tumor
-0.4
141
Tumor
-0.4
724
Normal
-0.4
713
Tumor
-0.4
965
Tumor
-0.4
351
Tumor
-0.4
478
Normal
-0.4
125
Tumor
-0.4
525
Tumor
-0.4
145
Tumor
-0.4
483
Tumor
-0.4
443
Tumor
-0.4
217
Tumor
-0.4
975
Tumor
-0.4
491
Tumor
-0.5
331
Tumor
-0.5
467
Tumor
-0.5
881
Tumor
-0.5
223
Tumor
-0.5
427
Tumor
-0.5
161
Tumor
-0.5
383
Tumor
-0.5
123
Tumor
-0.5
823
Tumor
-0.5
1043
Tumor
-0.5
1025
Tumor
-0.6
277
Tumor
-0.6
851
Tumor
-0.6
545
Tumor
-0.6
311
Tumor
-0.6
877
Tumor
-0.6
213
Tumor
-0.6
395
Tumor
-0.6
983
Tumor
-0.6
641
Tumor
-0.6
131
Tumor
-0.6
1021
Tumor
-0.6
817
Tumor
-0.6
471
Tumor
-0.7
477
Tumor
-0.7
883
Tumor
-0.7
663
Tumor
-0.7
113
Tumor
-0.7
671
Tumor
-0.7
951
Tumor
-0.7
1031
Tumor
-0.7
385
Tumor
-0.7
743
Tumor
-0.8
283
Tumor
-0.8
425
Tumor
-0.8
865
Tumor
-0.8
537
Tumor
-0.8
375
Tumor
-0.8
137
Tumor
-0.8
921
Tumor
-0.8
957
Tumor
-0.9
221
Tumor
-0.9
211
Tumor
-1.0
553
Tumor
-1.0
815
Tumor
-1.0
661
Tumor
-1.2
727
Tumor
-1.8
1027
Tumor
-2.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
