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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SRP68 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
69.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
63.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
62.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
61.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
56.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
53.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
51.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
50.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
50.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
50.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
48.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
47.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
45.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
44.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
44.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
43.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
42.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
42.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
42.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
41.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
40.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
40.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
39.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
39.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
39.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
38.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
38.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
38.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
38.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
38.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
37.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
37.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
37.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
37.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
37.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
37.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
36.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
36.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
36.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
35.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
35.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
35.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
35.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
35.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
34.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
34.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
33.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
33.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
33.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
33.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
33.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
33.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
32.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
32.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
32.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
32.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
32.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
32.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
31.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
31.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
31.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
31.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
31.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
31.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
31.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
30.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
30.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
30.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
29.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
29.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
29.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
29.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
29.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
29.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
29.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
29.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
29.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
29.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
28.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
28.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
28.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
28.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
28.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
28.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
27.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
27.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
27.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
27.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
27.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
27.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
27.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
27.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
27.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
26.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
26.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
26.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
26.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
26.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
26.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
26.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
26.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
25.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
25.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
25.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
25.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
25.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
25.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
24.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
24.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
24.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
24.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
24.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
24.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
24.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
24.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
24.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
23.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
23.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
23.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
23.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
23.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
23.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
23.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
23.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
23.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
22.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
22.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
22.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
22.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
22.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
22.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
22.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
22.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
21.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
21.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
21.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
21.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
21.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
20.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
20.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
20.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
20.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
20.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
20.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
20.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
20.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
20.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
20.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
19.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
19.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
19.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
19.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
19.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
19.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
19.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
19.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
19.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
18.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
18.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
18.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
18.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
18.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
18.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
18.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
18.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
18.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
17.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
17.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
17.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
17.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
17.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
17.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
17.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
17.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
16.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
16.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
15.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
15.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
15.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
14.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
14.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
13.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
13.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
12.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SRP68 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.1
Number of samples
231
Samples
Sample
Description
TPM
DO48681
0 years, male, NA, stage:2, alive, 900 days
92.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
83.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
66.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
63.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
63.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
59.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
58.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
58.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
57.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
55.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
53.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
53.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
51.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
51.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
50.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
49.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
48.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
48.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
47.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
46.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
46.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
46.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
45.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
44.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
43.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
42.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
42.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
42.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
42.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
41.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
41.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
41.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
40.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
40.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
40.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
40.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
40.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
40.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
39.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
39.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
38.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
38.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
38.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
38.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
38.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
38.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
37.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
37.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
37.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
36.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
36.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
36.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
36.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
36.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
36.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
36.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
35.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
35.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
35.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
35.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
35.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
35.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
34.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
34.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
34.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
34.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
34.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
34.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
34.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
33.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
33.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
33.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
33.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
32.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
32.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
32.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
32.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
31.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
31.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
31.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
31.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
31.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
30.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
30.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
30.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
30.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
30.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
30.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
30.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
30.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
30.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
30.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
30.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
30.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
30.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
29.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
29.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
29.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
29.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
29.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
29.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
29.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
29.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
29.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
29.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
29.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
29.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
29.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
28.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
28.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
28.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
28.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
28.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
28.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
28.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
28.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
28.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
28.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
27.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
27.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
27.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
27.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
27.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
27.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
27.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
27.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
26.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
26.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
26.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
26.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
26.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
26.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
26.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
26.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
25.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
25.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
25.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
25.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
25.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
25.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
25.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
25.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
25.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
25.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
25.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
24.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
24.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
24.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
24.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
24.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
24.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
24.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
23.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
23.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
23.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
23.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
23.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
23.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
23.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
22.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
22.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
22.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
22.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
22.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
22.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
22.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
22.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
22.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
22.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
21.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
21.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
21.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
21.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
21.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
20.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
20.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
20.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
20.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
20.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
19.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
19.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
19.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
19.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
19.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
18.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
18.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
17.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
17.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
17.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
16.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
15.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
14.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
14.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
635
Tumor
0.7
745
Tumor
0.7
527
Tumor
0.6
1013
Tumor
0.6
137
Tumor
0.6
313
Tumor
0.6
285
Tumor
0.5
865
Tumor
0.5
981
Tumor
0.5
353
Tumor
0.5
557
Tumor
0.5
487
Tumor
0.4
523
Tumor
0.4
223
Tumor
0.4
1015
Tumor
0.4
535
Tumor
0.4
755
Tumor
0.4
477
Tumor
0.4
112
Tumor
0.4
187
Tumor
0.4
724
Normal
0.4
937
Tumor
0.4
361
Tumor
0.3
497
Tumor
0.3
331
Tumor
0.3
327
Tumor
0.3
357
Tumor
0.3
727
Tumor
0.3
815
Tumor
0.3
983
Tumor
0.3
955
Tumor
0.3
617
Tumor
0.3
663
Tumor
0.3
861
Tumor
0.3
211
Tumor
0.3
1045
Tumor
0.3
113
Tumor
0.3
387
Tumor
0.3
553
Tumor
0.3
918
Normal
0.3
951
Tumor
0.3
135
Tumor
0.3
267
Tumor
0.3
1025
Tumor
0.2
697
Tumor
0.2
261
Tumor
0.2
455
Tumor
0.2
923
Tumor
0.2
533
Tumor
0.2
863
Tumor
0.2
383
Tumor
0.2
721
Tumor
0.2
141
Tumor
0.2
554
Normal
0.2
965
Tumor
0.2
473
Tumor
0.2
367
Tumor
0.2
1028
Normal
0.2
857
Tumor
0.2
257
Tumor
0.2
926
Normal
0.2
395
Tumor
0.2
484
Normal
0.2
558
Normal
0.2
978
Normal
0.1
665
Tumor
0.1
128
Normal
0.1
445
Tumor
0.1
573
Tumor
0.1
494
Normal
0.1
922
Normal
0.1
145
Tumor
0.1
355
Tumor
0.1
526
Normal
0.1
328
Normal
0.1
728
Normal
0.1
125
Tumor
0.1
195
Tumor
0.1
571
Tumor
0.1
568
Normal
0.1
467
Tumor
0.1
474
Normal
0.1
913
Tumor
0.1
636
Normal
0.1
1026
Normal
0.1
481
Tumor
0.1
423
Tumor
0.1
492
Normal
0.1
917
Tumor
0.1
1014
Normal
0.1
536
Normal
0.1
393
Tumor
0.1
743
Tumor
0.1
431
Tumor
0.1
977
Tumor
0.1
191
Tumor
0.1
924
Normal
0.1
925
Tumor
0.1
463
Tumor
0.1
471
Tumor
0.1
228
Normal
0.1
171
Tumor
0.1
966
Normal
0.1
867
Tumor
0.1
435
Tumor
0.1
982
Normal
0.1
448
Normal
0.1
628
Normal
0.1
873
Tumor
0.1
984
Normal
0.1
864
Normal
0.1
385
Tumor
0.1
351
Tumor
0.1
312
Normal
0.1
443
Tumor
0.1
212
Normal
0.1
534
Normal
0.1
567
Tumor
0.1
524
Normal
0.1
714
Normal
0.1
1022
Normal
0.1
944
Normal
0.1
572
Normal
0.1
343
Tumor
0.1
514
Normal
0.1
723
Tumor
0.1
862
Normal
0.1
648
Normal
0.1
427
Tumor
0.1
286
Normal
0.1
488
Normal
0.1
518
Normal
0.1
368
Normal
0.0
415
Tumor
0.0
647
Tumor
0.0
1027
Tumor
0.0
271
Tumor
0.0
365
Tumor
0.0
416
Normal
0.0
1016
Normal
0.0
738
Normal
0.0
528
Normal
0.0
392
Normal
0.0
311
Tumor
0.0
868
Normal
0.0
1021
Tumor
0.0
661
Tumor
0.0
363
Tumor
0.0
696
Normal
0.0
786
Normal
0.0
564
Normal
0.0
278
Normal
0.0
698
Normal
0.0
356
Normal
0.0
1046
Normal
0.0
422
Normal
0.0
516
Normal
0.0
466
Normal
0.0
284
Normal
0.0
546
Normal
0.0
126
Normal
0.0
685
Tumor
0.0
452
Normal
0.0
491
Tumor
0.0
938
Normal
0.0
537
Tumor
0.0
866
Normal
0.0
127
Tumor
0.0
277
Tumor
0.0
953
Tumor
0.0
874
Normal
0.0
884
Normal
0.0
447
Tumor
0.0
462
Normal
0.0
142
Normal
0.0
616
Normal
0.0
262
Normal
0.0
493
Tumor
0.0
824
Normal
0.0
852
Normal
0.0
332
Normal
0.0
671
Tumor
N/A
756
Normal
0.0
111
Normal
0.0
1042
Normal
0.0
1044
Normal
0.0
298
Normal
0.0
713
Tumor
0.0
956
Normal
0.0
217
Tumor
0.0
642
Normal
0.0
778
Normal
0.0
132
Normal
0.0
915
Tumor
0.0
746
Normal
0.0
136
Normal
0.0
916
Normal
0.0
742
Normal
0.0
461
Tumor
0.0
114
Normal
0.0
482
Normal
0.0
1032
Normal
0.0
468
Normal
0.0
662
Normal
0.0
472
Normal
0.0
138
Normal
0.0
283
Tumor
0.0
413
Tumor
0.0
358
Normal
0.0
851
Tumor
0.0
344
Normal
0.0
686
Normal
0.0
976
Normal
0.0
957
Tumor
0.0
563
Tumor
0.0
666
Normal
0.0
214
Normal
0.0
963
Tumor
0.0
218
Normal
0.0
952
Normal
0.0
525
Tumor
0.0
396
Normal
0.0
147
Tumor
0.0
412
Normal
0.0
376
Normal
0.0
436
Normal
-0.1
538
Normal
-0.1
664
Normal
-0.1
123
Tumor
-0.1
1031
Tumor
-0.1
352
Normal
-0.1
124
Normal
-0.1
513
Tumor
-0.1
434
Normal
-0.1
362
Normal
-0.1
386
Normal
-0.1
314
Normal
-0.1
232
Normal
-0.1
258
Normal
-0.1
968
Normal
-0.1
672
Normal
-0.1
816
Normal
-0.1
421
Tumor
-0.1
618
Normal
-0.1
818
Normal
-0.1
478
Normal
-0.1
964
Normal
-0.1
411
Tumor
-0.1
366
Normal
-0.1
814
Normal
-0.1
716
Normal
-0.1
388
Normal
-0.1
777
Tumor
-0.1
221
Tumor
-0.1
741
Tumor
-0.1
172
Normal
-0.1
912
Normal
-0.1
858
Normal
-0.1
958
Normal
-0.1
722
Normal
-0.1
188
Normal
-0.1
272
Normal
-0.1
394
Normal
-0.1
954
Normal
-0.1
914
Normal
-0.1
391
Tumor
-0.1
375
Tumor
-0.1
446
Normal
-0.1
354
Normal
-0.1
498
Normal
-0.1
817
Tumor
-0.1
883
Tumor
-0.1
268
Normal
-0.1
878
Normal
-0.1
882
Normal
-0.1
224
Normal
-0.1
813
Tumor
-0.1
967
Tumor
-0.1
364
Normal
-0.1
785
Tumor
-0.1
148
Normal
-0.1
131
Tumor
-0.1
342
Normal
-0.1
222
Normal
-0.1
424
Normal
-0.1
196
Normal
-0.1
414
Normal
-0.1
161
Tumor
-0.1
744
Normal
-0.1
943
Tumor
-0.1
1041
Tumor
-0.1
186
Normal
-0.1
1043
Tumor
-0.1
517
Tumor
-0.1
464
Normal
-0.1
881
Tumor
-0.1
426
Normal
-0.1
574
Normal
-0.1
433
Tumor
-0.1
715
Tumor
-0.1
456
Normal
-0.2
192
Normal
-0.2
515
Tumor
-0.2
877
Tumor
-0.2
444
Normal
-0.2
162
Normal
-0.2
641
Tumor
-0.2
213
Tumor
-0.2
146
Normal
-0.2
465
Tumor
-0.2
428
Normal
-0.2
384
Normal
-0.2
823
Tumor
-0.2
975
Tumor
-0.2
627
Tumor
-0.2
432
Normal
-0.2
297
Tumor
-0.2
185
Tumor
-0.2
231
Tumor
-0.2
341
Tumor
-0.3
737
Tumor
-0.3
227
Tumor
-0.3
615
Tumor
-0.3
695
Tumor
-0.3
483
Tumor
-0.3
921
Tumor
-0.3
545
Tumor
-0.4
451
Tumor
-0.4
425
Tumor
-0.5
911
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
