We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NDUFV1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
123.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
583.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
355.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
305.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
289.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
275.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
271.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
270.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
266.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
252.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
246.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
244.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
228.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
227.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
221.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
210.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
206.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
205.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
203.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
203.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
202.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
201.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
201.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
201.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
197.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
197.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
193.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
192.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
191.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
189.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
188.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
186.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
184.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
183.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
183.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
182.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
180.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
178.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
177.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
176.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
176.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
175.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
173.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
172.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
171.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
171.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
171.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
171.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
171.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
171.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
170.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
170.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
170.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
170.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
169.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
168.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
167.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
167.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
167.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
166.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
166.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
166.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
165.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
165.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
163.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
162.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
162.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
162.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
161.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
161.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
161.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
160.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
160.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
160.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
159.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
159.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
158.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
156.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
156.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
156.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
155.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
154.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
154.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
154.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
153.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
153.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
153.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
152.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
152.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
150.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
150.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
150.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
149.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
149.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
149.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
149.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
149.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
148.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
148.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
148.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
148.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
148.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
148.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
147.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
147.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
146.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
145.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
145.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
145.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
144.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
143.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
143.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
142.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
142.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
141.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
141.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
140.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
140.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
139.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
139.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
139.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
138.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
135.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
134.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
134.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
134.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
133.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
132.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
131.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
131.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
131.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
131.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
131.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
131.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
130.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
129.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
129.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
129.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
129.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
128.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
128.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
128.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
128.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
127.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
127.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
126.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
126.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
125.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
125.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
125.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
125.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
124.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
124.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
124.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
124.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
123.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
123.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
123.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
122.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
122.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
122.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
121.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
121.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
121.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
121.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
121.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
120.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
119.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
119.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
119.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
119.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
119.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
118.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
118.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
116.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
116.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
116.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
115.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
115.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
115.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
115.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
115.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
114.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
114.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
114.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
114.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
113.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
113.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
113.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
112.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
112.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
112.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
112.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
112.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
112.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
112.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
111.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
111.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
111.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
111.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
111.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
110.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
110.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
110.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
110.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
110.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
110.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
110.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
109.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
109.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
108.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
108.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
107.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
107.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
106.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
106.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
106.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
106.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
106.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
105.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
105.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
105.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
104.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
103.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
103.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
103.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
102.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
102.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
102.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
101.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
101.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
101.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
100.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
100.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
100.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
100.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
100.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
99.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
99.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
98.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
98.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
98.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
98.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
98.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
98.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
98.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
97.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
97.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
96.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
96.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
96.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
95.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
95.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
95.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
95.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
95.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
95.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
94.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
94.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
94.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
94.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
94.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
94.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
93.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
92.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
91.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
91.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
91.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
90.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
90.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
90.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
90.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
90.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
89.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
89.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
88.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
88.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
88.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
88.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
88.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
87.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
87.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
86.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
86.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
85.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
85.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
85.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
84.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
84.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
84.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
83.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
82.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
82.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
82.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
82.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
82.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
82.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
81.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
80.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
79.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
79.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
79.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
79.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
79.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
78.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
78.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
77.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
77.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
76.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
76.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
76.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
75.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
75.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
75.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
75.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
75.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
75.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
74.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
74.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
74.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
74.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
73.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
73.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
71.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
70.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
70.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
69.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
67.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
65.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
65.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
65.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
63.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
63.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
62.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
61.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
58.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
57.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
57.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
56.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
56.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
54.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
53.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
53.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
53.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
51.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
50.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
49.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
49.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
48.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
47.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
47.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
47.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
46.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
45.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
44.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
38.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
36.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
25.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
24.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
20.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
19.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
18.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NDUFV1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
93.4
Number of samples
231
Samples
Sample
Description
TPM
DO45191
0 years, female, NA, stage:2, alive, 1200 days
746.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
428.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
240.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
240.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
216.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
212.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
187.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
180.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
172.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
171.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
160.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
159.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
158.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
153.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
151.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
148.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
147.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
145.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
142.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
142.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
141.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
141.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
133.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
132.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
130.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
128.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
128.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
127.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
126.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
124.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
123.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
122.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
119.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
118.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
116.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
116.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
113.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
112.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
112.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
111.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
110.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
109.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
109.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
109.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
109.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
108.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
108.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
108.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
107.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
107.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
106.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
105.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
105.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
105.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
105.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
105.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
104.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
102.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
102.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
101.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
101.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
101.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
100.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
100.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
100.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
99.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
98.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
98.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
98.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
98.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
97.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
97.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
97.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
96.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
96.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
95.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
94.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
94.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
94.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
94.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
93.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
93.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
93.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
92.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
92.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
91.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
91.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
90.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
90.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
90.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
90.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
89.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
89.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
89.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
89.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
89.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
89.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
89.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
88.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
88.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
88.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
88.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
88.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
88.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
87.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
87.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
86.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
86.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
85.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
84.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
84.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
84.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
84.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
83.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
83.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
83.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
82.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
81.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
81.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
81.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
81.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
81.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
80.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
80.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
80.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
79.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
79.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
79.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
78.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
78.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
78.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
77.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
77.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
77.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
76.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
76.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
75.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
75.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
75.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
75.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
75.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
75.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
74.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
74.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
74.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
74.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
73.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
73.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
73.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
73.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
72.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
72.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
72.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
72.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
71.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
71.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
70.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
70.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
70.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
70.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
70.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
69.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
69.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
69.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
69.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
69.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
68.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
68.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
68.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
68.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
68.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
67.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
67.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
67.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
67.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
67.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
67.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
67.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
67.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
65.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
65.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
64.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
64.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
64.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
63.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
63.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
63.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
62.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
62.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
61.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
61.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
60.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
60.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
60.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
60.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
59.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
59.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
59.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
58.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
58.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
58.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
58.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
58.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
58.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
57.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
57.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
56.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
55.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
54.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
53.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
53.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
52.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
52.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
51.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
51.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
51.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
51.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
51.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
51.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
50.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
50.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
49.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
49.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
48.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
45.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
45.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
44.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
44.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
40.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
38.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
35.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
473
Tumor
0.8
128
Normal
0.8
112
Tumor
0.7
914
Normal
0.6
114
Normal
0.6
636
Normal
0.6
878
Normal
0.6
132
Normal
0.6
278
Normal
0.6
981
Tumor
0.5
358
Normal
0.5
162
Normal
0.5
327
Tumor
0.5
214
Normal
0.5
466
Normal
0.5
1041
Tumor
0.5
1043
Tumor
0.5
713
Tumor
0.5
222
Normal
0.5
1028
Normal
0.5
446
Normal
0.4
915
Tumor
0.4
148
Normal
0.4
196
Normal
0.4
388
Normal
0.4
111
Normal
0.4
642
Normal
0.4
816
Normal
0.4
258
Normal
0.4
952
Normal
0.4
376
Normal
0.4
172
Normal
0.4
314
Normal
0.4
396
Normal
0.4
426
Normal
0.4
136
Normal
0.4
448
Normal
0.4
366
Normal
0.4
298
Normal
0.4
518
Normal
0.4
272
Normal
0.4
618
Normal
0.4
138
Normal
0.4
944
Normal
0.4
922
Normal
0.3
171
Tumor
0.3
564
Normal
0.3
344
Normal
0.3
342
Normal
0.3
742
Normal
0.3
464
Normal
0.3
362
Normal
0.3
328
Normal
0.3
554
Normal
0.3
462
Normal
0.3
698
Normal
0.3
738
Normal
0.3
232
Normal
0.3
356
Normal
0.3
451
Tumor
0.3
312
Normal
0.3
628
Normal
0.3
394
Normal
0.3
436
Normal
0.3
126
Normal
0.3
938
Normal
0.3
477
Tumor
0.3
1022
Normal
0.3
648
Normal
0.3
516
Normal
0.3
262
Normal
0.3
616
Normal
0.3
571
Tumor
0.3
352
Normal
0.3
412
Normal
0.3
484
Normal
0.3
188
Normal
0.3
474
Normal
0.3
911
Tumor
0.3
864
Normal
0.3
422
Normal
0.3
982
Normal
0.3
568
Normal
0.3
861
Tumor
0.3
546
Normal
0.3
866
Normal
0.2
722
Normal
0.2
778
Normal
0.2
267
Tumor
0.2
956
Normal
0.2
456
Normal
0.2
452
Normal
0.2
482
Normal
0.2
746
Normal
0.2
341
Tumor
0.2
918
Normal
0.2
664
Normal
0.2
1016
Normal
0.2
696
Normal
0.2
528
Normal
0.2
393
Tumor
0.2
858
Normal
0.2
926
Normal
0.2
627
Tumor
0.2
728
Normal
0.2
113
Tumor
0.2
617
Tumor
0.2
431
Tumor
0.2
924
Normal
0.2
494
Normal
0.2
955
Tumor
0.2
824
Normal
0.2
432
Normal
0.2
714
Normal
0.2
526
Normal
0.2
416
Normal
0.2
218
Normal
0.2
124
Normal
0.2
424
Normal
0.2
434
Normal
0.2
873
Tumor
0.2
212
Normal
0.2
146
Normal
0.2
538
Normal
0.2
574
Normal
0.2
386
Normal
0.1
228
Normal
0.1
231
Tumor
0.1
414
Normal
0.1
662
Normal
0.1
1026
Normal
0.1
468
Normal
0.1
127
Tumor
0.1
874
Normal
0.1
368
Normal
0.1
142
Normal
0.1
472
Normal
0.1
695
Tumor
0.1
286
Normal
0.1
354
Normal
0.1
968
Normal
0.1
514
Normal
0.1
686
Normal
0.1
223
Tumor
0.1
488
Normal
0.1
723
Tumor
0.1
966
Normal
0.1
697
Tumor
0.1
392
Normal
0.1
572
Normal
0.1
355
Tumor
0.1
268
Normal
0.1
716
Normal
0.1
868
Normal
0.1
755
Tumor
0.1
954
Normal
0.1
984
Normal
0.1
1032
Normal
0.1
423
Tumor
0.1
913
Tumor
0.1
666
Normal
0.1
415
Tumor
0.0
428
Normal
0.0
1014
Normal
0.0
364
Normal
0.0
818
Normal
0.0
465
Tumor
0.0
744
Normal
0.0
487
Tumor
0.0
435
Tumor
0.0
615
Tumor
0.0
852
Normal
0.0
756
Normal
0.0
186
Normal
0.0
916
Normal
0.0
883
Tumor
0.0
867
Tumor
0.0
145
Tumor
0.0
862
Normal
0.0
534
Normal
0.0
1015
Tumor
0.0
964
Normal
0.0
963
Tumor
0.0
444
Normal
0.0
912
Normal
0.0
715
Tumor
0.0
976
Normal
0.0
332
Normal
0.0
284
Normal
0.0
261
Tumor
0.0
1042
Normal
-0.1
1021
Tumor
-0.1
135
Tumor
-0.1
192
Normal
-0.1
1046
Normal
-0.1
786
Normal
-0.1
1044
Normal
-0.1
483
Tumor
-0.1
357
Tumor
-0.1
958
Normal
-0.1
635
Tumor
-0.1
524
Normal
-0.1
567
Tumor
-0.1
923
Tumor
-0.1
558
Normal
-0.1
195
Tumor
-0.1
647
Tumor
-0.1
161
Tumor
-0.1
492
Normal
-0.1
672
Normal
-0.1
445
Tumor
-0.1
721
Tumor
-0.1
882
Normal
-0.2
384
Normal
-0.2
217
Tumor
-0.2
977
Tumor
-0.2
361
Tumor
-0.2
227
Tumor
-0.2
741
Tumor
-0.2
978
Normal
-0.2
557
Tumor
-0.2
224
Normal
-0.2
478
Normal
-0.2
387
Tumor
-0.2
257
Tumor
-0.2
365
Tumor
-0.3
536
Normal
-0.3
523
Tumor
-0.3
185
Tumor
-0.3
1031
Tumor
-0.3
498
Normal
-0.3
141
Tumor
-0.3
367
Tumor
-0.3
743
Tumor
-0.3
481
Tumor
-0.3
363
Tumor
-0.3
411
Tumor
-0.3
191
Tumor
-0.3
147
Tumor
-0.4
525
Tumor
-0.4
943
Tumor
-0.4
497
Tumor
-0.4
351
Tumor
-0.4
537
Tumor
-0.4
857
Tumor
-0.4
471
Tumor
-0.4
413
Tumor
-0.4
395
Tumor
-0.4
533
Tumor
-0.4
965
Tumor
-0.4
493
Tumor
-0.4
884
Normal
-0.4
491
Tumor
-0.4
313
Tumor
-0.4
823
Tumor
-0.4
527
Tumor
-0.4
1045
Tumor
-0.4
447
Tumor
-0.4
814
Normal
-0.5
427
Tumor
-0.5
443
Tumor
-0.5
1027
Tumor
-0.5
663
Tumor
-0.5
353
Tumor
-0.5
553
Tumor
-0.5
463
Tumor
-0.5
573
Tumor
-0.5
461
Tumor
-0.5
123
Tumor
-0.5
517
Tumor
-0.5
515
Tumor
-0.5
187
Tumor
-0.5
467
Tumor
-0.5
817
Tumor
-0.5
1025
Tumor
-0.5
433
Tumor
-0.5
917
Tumor
-0.5
271
Tumor
-0.5
211
Tumor
-0.5
967
Tumor
-0.6
975
Tumor
-0.6
877
Tumor
-0.6
421
Tumor
-0.6
957
Tumor
-0.6
213
Tumor
-0.6
925
Tumor
-0.6
785
Tumor
-0.6
881
Tumor
-0.6
343
Tumor
-0.6
297
Tumor
-0.6
391
Tumor
-0.6
131
Tumor
-0.6
745
Tumor
-0.6
953
Tumor
-0.6
641
Tumor
-0.6
815
Tumor
-0.6
937
Tumor
-0.6
375
Tumor
-0.6
813
Tumor
-0.6
277
Tumor
-0.6
513
Tumor
-0.6
137
Tumor
-0.6
983
Tumor
-0.7
545
Tumor
-0.7
851
Tumor
-0.7
311
Tumor
-0.7
951
Tumor
-0.7
563
Tumor
-0.7
863
Tumor
-0.7
383
Tumor
-0.7
727
Tumor
-0.7
921
Tumor
-0.8
865
Tumor
-0.8
331
Tumor
-0.8
455
Tumor
-0.8
535
Tumor
-0.8
385
Tumor
-0.8
1013
Tumor
-0.8
285
Tumor
-0.9
125
Tumor
-0.9
221
Tumor
-0.9
665
Tumor
-0.9
777
Tumor
-0.9
685
Tumor
-0.9
661
Tumor
-1.0
724
Normal
-1.0
425
Tumor
-1.0
283
Tumor
-1.0
671
Tumor
-1.1
737
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.