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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GPT is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
55.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
354.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
286.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
272.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
264.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
247.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
241.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
231.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
227.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
216.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
203.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
201.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
200.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
199.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
198.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
191.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
190.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
188.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
185.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
183.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
181.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
178.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
176.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
171.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
170.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
168.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
164.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
157.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
151.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
146.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
146.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
143.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
143.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
141.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
139.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
138.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
132.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
131.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
130.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
129.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
128.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
124.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
123.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
121.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
120.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
118.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
118.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
114.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
114.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
113.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
113.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
112.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
112.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
109.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
108.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
108.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
107.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
104.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
103.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
101.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
99.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
99.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
99.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
99.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
98.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
97.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
96.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
96.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
95.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
92.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
92.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
92.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
90.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
89.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
89.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
88.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
86.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
84.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
83.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
81.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
81.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
81.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
80.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
80.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
80.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
78.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
77.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
77.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
77.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
77.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
75.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
74.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
72.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
70.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
70.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
70.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
69.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
69.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
69.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
69.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
68.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
67.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
67.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
67.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
66.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
65.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
63.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
63.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
63.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
62.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
62.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
62.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
61.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
61.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
61.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
60.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
60.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
59.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
59.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
59.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
58.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
57.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
57.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
57.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
56.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
55.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
55.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
53.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
53.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
53.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
52.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
52.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
52.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
52.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
52.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
51.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
51.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
51.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
51.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
50.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
49.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
49.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
49.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
48.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
48.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
47.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
47.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
47.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
46.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
46.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
46.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
46.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
45.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
45.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
45.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
45.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
44.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
44.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
44.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
44.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
43.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
43.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
42.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
41.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
41.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
41.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
41.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
40.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
40.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
39.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
39.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
39.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
38.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
38.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
38.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
37.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
37.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
36.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
36.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
36.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
35.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
35.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
35.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
34.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
34.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
34.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
34.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
34.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
34.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
34.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
33.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
33.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
33.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
32.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
32.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
32.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
32.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
32.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
31.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
31.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
30.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
30.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
29.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
29.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
29.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
29.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
28.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
28.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
28.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
28.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
28.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
28.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
28.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
28.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
27.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
27.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
27.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
26.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
26.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
26.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
26.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
26.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
25.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
25.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
24.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
24.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
24.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
24.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
24.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
24.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
24.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
24.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
23.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
23.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
23.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
23.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
23.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
23.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
21.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
21.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
21.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
20.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
20.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
20.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
20.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
20.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
20.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
19.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
19.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
18.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
18.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
18.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
17.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
16.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
13.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
13.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
9.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
9.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
7.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
4.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
4.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
4.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GPT is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
44.7
Number of samples
231
Samples
Sample
Description
TPM
DO45167
0 years, male, NA, stage:2, dead, 1440 days
271.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
254.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
250.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
173.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
160.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
147.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
146.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
138.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
136.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
132.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
131.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
131.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
124.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
122.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
120.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
118.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
116.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
113.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
112.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
111.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
110.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
108.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
105.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
100.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
99.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
94.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
93.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
93.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
89.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
89.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
88.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
86.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
86.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
82.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
81.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
79.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
79.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
78.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
78.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
77.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
76.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
75.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
75.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
73.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
72.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
71.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
70.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
68.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
67.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
67.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
63.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
63.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
63.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
63.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
62.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
60.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
60.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
60.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
58.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
57.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
57.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
57.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
56.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
55.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
54.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
54.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
54.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
53.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
53.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
52.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
51.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
51.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
51.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
49.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
49.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
49.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
48.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
48.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
47.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
47.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
47.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
47.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
47.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
46.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
45.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
44.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
43.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
43.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
43.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
43.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
42.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
42.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
42.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
42.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
41.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
41.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
40.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
40.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
40.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
40.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
40.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
40.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
39.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
39.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
39.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
39.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
39.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
38.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
37.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
37.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
37.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
36.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
35.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
35.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
35.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
34.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
34.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
33.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
33.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
31.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
31.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
29.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
28.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
27.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
27.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
26.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
26.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
26.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
25.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
25.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
25.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
25.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
25.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
23.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
23.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
23.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
23.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
21.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
21.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
21.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
20.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
20.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
20.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
20.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
17.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
16.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
5.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
5.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
4.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
1.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
128
Normal
1.2
742
Normal
1.2
484
Normal
1.1
546
Normal
1.1
481
Tumor
1.1
698
Normal
1.1
862
Normal
1.0
914
Normal
1.0
132
Normal
0.9
648
Normal
0.9
196
Normal
0.9
866
Normal
0.9
1032
Normal
0.9
272
Normal
0.9
878
Normal
0.9
964
Normal
0.9
723
Tumor
0.9
722
Normal
0.9
228
Normal
0.9
342
Normal
0.9
414
Normal
0.8
462
Normal
0.8
744
Normal
0.8
516
Normal
0.8
944
Normal
0.8
824
Normal
0.8
222
Normal
0.8
616
Normal
0.8
628
Normal
0.8
864
Normal
0.8
482
Normal
0.8
786
Normal
0.8
111
Normal
0.8
518
Normal
0.8
816
Normal
0.8
314
Normal
0.8
366
Normal
0.8
448
Normal
0.8
728
Normal
0.8
114
Normal
0.8
456
Normal
0.8
1044
Normal
0.8
1022
Normal
0.8
568
Normal
0.8
278
Normal
0.7
618
Normal
0.7
412
Normal
0.7
572
Normal
0.7
356
Normal
0.7
436
Normal
0.7
376
Normal
0.7
148
Normal
0.7
474
Normal
0.7
364
Normal
0.7
918
Normal
0.7
526
Normal
0.7
258
Normal
0.7
362
Normal
0.7
924
Normal
0.7
528
Normal
0.7
494
Normal
0.7
468
Normal
0.7
938
Normal
0.7
756
Normal
0.7
424
Normal
0.7
388
Normal
0.7
642
Normal
0.7
926
Normal
0.7
472
Normal
0.7
696
Normal
0.6
426
Normal
0.6
396
Normal
0.6
858
Normal
0.6
1014
Normal
0.6
514
Normal
0.6
954
Normal
0.6
358
Normal
0.6
976
Normal
0.6
464
Normal
0.6
172
Normal
0.6
212
Normal
0.6
1026
Normal
0.6
982
Normal
0.6
534
Normal
0.6
1028
Normal
0.6
162
Normal
0.6
714
Normal
0.6
432
Normal
0.6
332
Normal
0.6
1046
Normal
0.6
666
Normal
0.6
394
Normal
0.6
428
Normal
0.6
352
Normal
0.6
738
Normal
0.6
818
Normal
0.6
446
Normal
0.6
636
Normal
0.6
716
Normal
0.6
564
Normal
0.6
746
Normal
0.6
1016
Normal
0.6
868
Normal
0.5
956
Normal
0.5
298
Normal
0.5
286
Normal
0.5
664
Normal
0.5
778
Normal
0.5
1042
Normal
0.5
136
Normal
0.5
922
Normal
0.5
214
Normal
0.5
686
Normal
0.5
874
Normal
0.5
488
Normal
0.5
416
Normal
0.5
558
Normal
0.5
554
Normal
0.5
662
Normal
0.5
466
Normal
0.5
884
Normal
0.5
186
Normal
0.5
142
Normal
0.5
138
Normal
0.5
312
Normal
0.5
232
Normal
0.5
452
Normal
0.4
952
Normal
0.4
882
Normal
0.4
912
Normal
0.4
911
Tumor
0.4
958
Normal
0.4
422
Normal
0.4
966
Normal
0.4
984
Normal
0.4
344
Normal
0.4
146
Normal
0.4
126
Normal
0.4
386
Normal
0.4
284
Normal
0.4
968
Normal
0.4
978
Normal
0.3
574
Normal
0.3
188
Normal
0.3
916
Normal
0.3
328
Normal
0.3
354
Normal
0.2
262
Normal
0.2
852
Normal
0.2
955
Tumor
0.2
218
Normal
0.2
672
Normal
0.1
444
Normal
0.1
415
Tumor
0.1
538
Normal
0.1
557
Tumor
0.1
112
Tumor
0.1
368
Normal
0.1
873
Tumor
0.1
113
Tumor
0.1
268
Normal
0.1
384
Normal
0.0
498
Normal
0.0
478
Normal
0.0
327
Tumor
0.0
981
Tumor
0.0
392
Normal
0.0
492
Normal
0.0
745
Tumor
0.0
195
Tumor
0.0
145
Tumor
-0.1
224
Normal
-0.1
861
Tumor
-0.1
713
Tumor
-0.1
261
Tumor
-0.2
127
Tumor
-0.2
434
Normal
-0.2
124
Normal
-0.2
524
Normal
-0.2
536
Normal
-0.2
715
Tumor
-0.3
721
Tumor
-0.3
915
Tumor
-0.3
513
Tumor
-0.4
627
Tumor
-0.4
192
Normal
-0.4
1043
Tumor
-0.4
823
Tumor
-0.5
393
Tumor
-0.5
857
Tumor
-0.5
867
Tumor
-0.5
191
Tumor
-0.5
423
Tumor
-0.5
937
Tumor
-0.5
697
Tumor
-0.5
615
Tumor
-0.6
267
Tumor
-0.6
641
Tumor
-0.6
187
Tumor
-0.6
217
Tumor
-0.6
695
Tumor
-0.7
571
Tumor
-0.7
755
Tumor
-0.7
465
Tumor
-0.7
447
Tumor
-0.7
435
Tumor
-0.7
353
Tumor
-0.8
451
Tumor
-0.8
161
Tumor
-0.8
963
Tumor
-0.8
361
Tumor
-0.8
1041
Tumor
-0.8
923
Tumor
-0.8
785
Tumor
-0.9
1045
Tumor
-0.9
365
Tumor
-0.9
491
Tumor
-1.0
467
Tumor
-1.0
741
Tumor
-1.0
814
Normal
-1.0
617
Tumor
-1.0
477
Tumor
-1.0
851
Tumor
-1.0
433
Tumor
-1.0
917
Tumor
-1.0
515
Tumor
-1.0
411
Tumor
-1.0
943
Tumor
-1.1
227
Tumor
-1.1
1015
Tumor
-1.1
727
Tumor
-1.1
461
Tumor
-1.1
141
Tumor
-1.1
431
Tumor
-1.2
171
Tumor
-1.2
185
Tumor
-1.2
863
Tumor
-1.2
421
Tumor
-1.2
1027
Tumor
-1.2
493
Tumor
-1.2
685
Tumor
-1.3
363
Tumor
-1.3
881
Tumor
-1.3
1025
Tumor
-1.4
553
Tumor
-1.4
213
Tumor
-1.4
257
Tumor
-1.4
221
Tumor
-1.4
665
Tumor
-1.4
123
Tumor
-1.4
563
Tumor
-1.4
473
Tumor
-1.4
137
Tumor
-1.5
341
Tumor
-1.5
975
Tumor
-1.5
883
Tumor
-1.5
813
Tumor
-1.5
977
Tumor
-1.5
635
Tumor
-1.5
413
Tumor
-1.5
877
Tumor
-1.5
517
Tumor
-1.5
967
Tumor
-1.5
427
Tumor
-1.5
355
Tumor
-1.6
483
Tumor
-1.6
777
Tumor
-1.6
953
Tumor
-1.6
383
Tumor
-1.6
125
Tumor
-1.6
737
Tumor
-1.6
487
Tumor
-1.6
391
Tumor
-1.6
443
Tumor
-1.6
445
Tumor
-1.6
277
Tumor
-1.6
297
Tumor
-1.6
387
Tumor
-1.7
231
Tumor
-1.7
223
Tumor
-1.7
983
Tumor
-1.7
865
Tumor
-1.7
357
Tumor
-1.7
925
Tumor
-1.7
471
Tumor
-1.7
671
Tumor
-1.7
147
Tumor
-1.7
1013
Tumor
-1.7
135
Tumor
-1.7
647
Tumor
-1.7
913
Tumor
-1.7
395
Tumor
-1.8
311
Tumor
-1.8
425
Tumor
-1.8
455
Tumor
-1.8
1031
Tumor
-1.8
271
Tumor
-1.9
573
Tumor
-1.9
663
Tumor
-1.9
523
Tumor
-1.9
343
Tumor
-1.9
497
Tumor
-1.9
331
Tumor
-1.9
313
Tumor
-1.9
375
Tumor
-1.9
965
Tumor
-1.9
463
Tumor
-1.9
921
Tumor
-1.9
351
Tumor
-1.9
567
Tumor
-1.9
525
Tumor
-1.9
211
Tumor
-2.0
957
Tumor
-2.0
367
Tumor
-2.0
817
Tumor
-2.0
815
Tumor
-2.0
131
Tumor
-2.0
743
Tumor
-2.0
283
Tumor
-2.1
724
Normal
-2.1
951
Tumor
-2.1
285
Tumor
-2.1
1021
Tumor
-2.1
661
Tumor
-2.2
527
Tumor
-2.2
545
Tumor
-2.2
537
Tumor
-2.2
385
Tumor
-2.2
533
Tumor
-2.2
535
Tumor
-2.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.