We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MFSD3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
32.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
150.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
143.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
139.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
124.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
119.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
117.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
112.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
109.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
108.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
108.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
108.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
103.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
102.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
101.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
88.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
87.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
83.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
82.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
82.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
77.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
76.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
76.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
75.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
74.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
74.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
70.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
68.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
67.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
67.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
67.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
67.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
65.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
63.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
63.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
62.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
61.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
61.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
60.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
59.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
58.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
58.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
58.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
58.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
56.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
56.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
56.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
55.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
55.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
55.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
55.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
53.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
53.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
52.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
52.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
51.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
51.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
51.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
50.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
50.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
49.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
49.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
48.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
47.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
47.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
47.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
47.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
47.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
46.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
46.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
46.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
46.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
45.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
45.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
45.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
44.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
44.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
43.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
43.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
43.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
43.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
43.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
42.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
41.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
40.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
40.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
40.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
40.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
39.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
39.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
39.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
38.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
38.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
38.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
38.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
37.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
37.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
37.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
37.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
37.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
37.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
36.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
36.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
36.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
36.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
36.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
35.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
35.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
35.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
35.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
34.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
34.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
34.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
34.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
33.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
33.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
33.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
33.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
33.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
33.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
33.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
33.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
33.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
32.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
32.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
32.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
32.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
31.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
31.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
31.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
31.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
30.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
30.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
30.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
30.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
29.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
29.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
29.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
29.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
29.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
29.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
29.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
29.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
29.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
29.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
28.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
28.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
28.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
28.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
28.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
28.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
28.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
28.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
27.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
27.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
27.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
27.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
27.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
27.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
27.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
27.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
27.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
27.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
27.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
27.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
27.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
27.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
26.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
26.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
26.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
26.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
26.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
26.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
26.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
26.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
26.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
26.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
25.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
25.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
25.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
25.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
25.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
25.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
25.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
24.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
24.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
24.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
24.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
24.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
24.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
24.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
24.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
24.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
24.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
23.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
23.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
23.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
23.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
23.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
22.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
22.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
22.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
22.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
22.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
22.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
22.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
22.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
22.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
22.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
22.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
22.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
21.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
21.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
21.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
21.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
21.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
21.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
21.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
21.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
21.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
20.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
20.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
20.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
20.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
20.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
20.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
20.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
20.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
20.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
20.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
19.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
19.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
19.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
19.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
19.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
19.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
19.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
19.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
19.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
19.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
18.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
18.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
18.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
18.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
17.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
17.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
17.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
17.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
17.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
16.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
16.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
16.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
16.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
16.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
16.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
15.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
15.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
15.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
15.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
14.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
12.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
11.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MFSD3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.9
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
113.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
110.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
108.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
107.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
91.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
87.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
84.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
75.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
73.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
68.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
64.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
59.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
56.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
53.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
53.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
51.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
49.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
47.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
45.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
45.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
45.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
45.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
44.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
43.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
43.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
43.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
42.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
42.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
41.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
41.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
40.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
39.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
39.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
38.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
37.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
36.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
36.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
35.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
35.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
35.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
35.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
34.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
34.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
33.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
32.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
32.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
32.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
32.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
32.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
30.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
30.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
29.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
29.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
29.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
28.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
28.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
28.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
27.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
27.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
27.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
26.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
26.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
26.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
26.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
26.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
26.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
25.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
25.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
25.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
24.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
24.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
24.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
24.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
24.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
24.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
23.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
23.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
23.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
23.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
23.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
22.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
22.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
22.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
22.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
21.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
21.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
20.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
20.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
20.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
19.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
19.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
19.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
19.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
18.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
18.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
18.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
18.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
17.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
15.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
267
Tumor
1.3
127
Tumor
0.9
342
Normal
0.8
452
Normal
0.8
466
Normal
0.8
568
Normal
0.8
571
Tumor
0.8
564
Normal
0.8
257
Tumor
0.7
464
Normal
0.7
435
Tumor
0.7
868
Normal
0.7
196
Normal
0.7
362
Normal
0.6
456
Normal
0.6
391
Tumor
0.6
557
Tumor
0.6
558
Normal
0.6
358
Normal
0.6
468
Normal
0.6
128
Normal
0.6
1041
Tumor
0.5
912
Normal
0.5
914
Normal
0.5
366
Normal
0.5
388
Normal
0.5
114
Normal
0.5
1022
Normal
0.5
343
Tumor
0.5
1032
Normal
0.5
462
Normal
0.5
376
Normal
0.5
728
Normal
0.5
393
Tumor
0.4
278
Normal
0.4
862
Normal
0.4
145
Tumor
0.4
572
Normal
0.4
574
Normal
0.4
481
Tumor
0.4
422
Normal
0.4
384
Normal
0.4
516
Normal
0.4
222
Normal
0.4
126
Normal
0.4
925
Tumor
0.4
286
Normal
0.4
484
Normal
0.4
563
Tumor
0.4
132
Normal
0.4
414
Normal
0.4
146
Normal
0.4
723
Tumor
0.4
392
Normal
0.4
311
Tumor
0.3
298
Normal
0.3
172
Normal
0.3
258
Normal
0.3
863
Tumor
0.3
138
Normal
0.3
1026
Normal
0.3
818
Normal
0.3
386
Normal
0.3
192
Normal
0.3
428
Normal
0.3
113
Tumor
0.3
641
Tumor
0.3
616
Normal
0.3
426
Normal
0.3
354
Normal
0.3
472
Normal
0.3
214
Normal
0.3
297
Tumor
0.3
715
Tumor
0.3
465
Tumor
0.3
882
Normal
0.3
187
Tumor
0.3
567
Tumor
0.3
618
Normal
0.3
232
Normal
0.3
272
Normal
0.3
396
Normal
0.3
467
Tumor
0.3
314
Normal
0.2
268
Normal
0.2
395
Tumor
0.2
231
Tumor
0.2
365
Tumor
0.2
866
Normal
0.2
228
Normal
0.2
874
Normal
0.2
312
Normal
0.2
514
Normal
0.2
332
Normal
0.2
123
Tumor
0.2
858
Normal
0.2
488
Normal
0.2
474
Normal
0.2
573
Tumor
0.2
473
Tumor
0.2
864
Normal
0.2
394
Normal
0.2
482
Normal
0.2
331
Tumor
0.2
816
Normal
0.2
423
Tumor
0.2
755
Tumor
0.2
161
Tumor
0.2
722
Normal
0.2
188
Normal
0.2
162
Normal
0.2
513
Tumor
0.2
368
Normal
0.2
361
Tumor
0.2
186
Normal
0.2
1046
Normal
0.2
873
Tumor
0.2
956
Normal
0.2
1016
Normal
0.2
744
Normal
0.2
136
Normal
0.2
878
Normal
0.2
261
Tumor
0.2
663
Tumor
0.2
786
Normal
0.1
262
Normal
0.1
448
Normal
0.1
212
Normal
0.1
617
Tumor
0.1
742
Normal
0.1
824
Normal
0.1
451
Tumor
0.1
911
Tumor
0.1
671
Tumor
0.1
528
Normal
0.1
884
Normal
0.1
1044
Normal
0.1
635
Tumor
0.1
642
Normal
0.1
698
Normal
0.1
218
Normal
0.1
785
Tumor
0.1
877
Tumor
0.1
1028
Normal
0.1
546
Normal
0.1
284
Normal
0.1
615
Tumor
0.1
277
Tumor
0.1
756
Normal
0.1
672
Normal
0.1
976
Normal
0.1
344
Normal
0.1
227
Tumor
0.1
494
Normal
0.1
518
Normal
0.1
1027
Tumor
0.1
648
Normal
0.1
738
Normal
0.1
851
Tumor
0.1
446
Normal
0.1
124
Normal
0.1
363
Tumor
0.0
356
Normal
0.0
498
Normal
0.0
148
Normal
0.0
328
Normal
0.0
1042
Normal
0.0
478
Normal
0.0
224
Normal
0.0
477
Tumor
0.0
436
Normal
0.0
661
Tumor
0.0
662
Normal
0.0
745
Tumor
0.0
171
Tumor
0.0
714
Normal
0.0
666
Normal
0.0
938
Normal
0.0
313
Tumor
0.0
665
Tumor
0.0
746
Normal
0.0
852
Normal
0.0
628
Normal
0.0
221
Tumor
0.0
865
Tumor
0.0
416
Normal
0.0
553
Tumor
0.0
445
Tumor
0.0
147
Tumor
-0.1
534
Normal
-0.1
352
Normal
-0.1
918
Normal
-0.1
185
Tumor
-0.1
412
Normal
-0.1
535
Tumor
-0.1
364
Normal
-0.1
433
Tumor
-0.1
944
Normal
-0.1
727
Tumor
-0.1
926
Normal
-0.1
1025
Tumor
-0.1
195
Tumor
-0.1
112
Tumor
-0.1
357
Tumor
-0.1
982
Normal
-0.1
664
Normal
-0.1
463
Tumor
-0.1
922
Normal
-0.1
915
Tumor
-0.1
125
Tumor
-0.1
191
Tumor
-0.1
1015
Tumor
-0.1
627
Tumor
-0.1
967
Tumor
-0.1
111
Normal
-0.1
455
Tumor
-0.1
217
Tumor
-0.1
716
Normal
-0.1
867
Tumor
-0.1
721
Tumor
-0.1
924
Normal
-0.1
137
Tumor
-0.1
955
Tumor
-0.2
353
Tumor
-0.2
421
Tumor
-0.2
533
Tumor
-0.2
424
Normal
-0.2
327
Tumor
-0.2
427
Tumor
-0.2
135
Tumor
-0.2
141
Tumor
-0.2
964
Normal
-0.2
952
Normal
-0.2
1014
Normal
-0.2
968
Normal
-0.2
142
Normal
-0.2
526
Normal
-0.2
271
Tumor
-0.2
861
Tumor
-0.2
537
Tumor
-0.2
471
Tumor
-0.2
984
Normal
-0.2
434
Normal
-0.2
978
Normal
-0.2
443
Tumor
-0.2
696
Normal
-0.2
778
Normal
-0.2
413
Tumor
-0.3
814
Normal
-0.3
817
Tumor
-0.3
536
Normal
-0.3
916
Normal
-0.3
815
Tumor
-0.3
1045
Tumor
-0.3
432
Normal
-0.3
385
Tumor
-0.3
857
Tumor
-0.3
981
Tumor
-0.3
367
Tumor
-0.3
341
Tumor
-0.3
686
Normal
-0.3
431
Tumor
-0.3
524
Normal
-0.3
913
Tumor
-0.3
554
Normal
-0.3
383
Tumor
-0.3
492
Normal
-0.3
461
Tumor
-0.3
741
Tumor
-0.4
697
Tumor
-0.4
958
Normal
-0.4
375
Tumor
-0.4
937
Tumor
-0.4
963
Tumor
-0.4
777
Tumor
-0.4
881
Tumor
-0.4
387
Tumor
-0.4
983
Tumor
-0.4
444
Normal
-0.4
447
Tumor
-0.4
213
Tumor
-0.4
1043
Tumor
-0.5
1021
Tumor
-0.5
954
Normal
-0.5
966
Normal
-0.5
695
Tumor
-0.5
883
Tumor
-0.5
685
Tumor
-0.5
538
Normal
-0.5
647
Tumor
-0.5
223
Tumor
-0.5
411
Tumor
-0.6
493
Tumor
-0.6
351
Tumor
-0.6
527
Tumor
-0.6
713
Tumor
-0.6
415
Tumor
-0.6
283
Tumor
-0.6
491
Tumor
-0.6
737
Tumor
-0.6
813
Tumor
-0.6
487
Tumor
-0.6
951
Tumor
-0.6
1013
Tumor
-0.6
355
Tumor
-0.7
483
Tumor
-0.7
977
Tumor
-0.7
285
Tumor
-0.7
497
Tumor
-0.7
1031
Tumor
-0.7
823
Tumor
-0.7
923
Tumor
-0.8
943
Tumor
-0.8
131
Tumor
-0.8
517
Tumor
-0.8
957
Tumor
-0.8
425
Tumor
-0.8
724
Normal
-0.9
636
Normal
-0.9
953
Tumor
-1.0
975
Tumor
-1.0
525
Tumor
-1.0
211
Tumor
-1.0
743
Tumor
-1.0
545
Tumor
-1.1
917
Tumor
-1.1
515
Tumor
-1.4
965
Tumor
-1.4
523
Tumor
-1.5
921
Tumor
-1.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.