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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZNF444 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
104.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
96.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
85.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
82.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
79.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
77.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
77.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
76.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
72.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
71.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
68.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
66.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
65.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
64.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
62.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
62.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
61.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
61.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
59.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
58.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
57.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
56.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
56.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
55.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
54.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
52.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
51.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
51.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
51.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
50.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
48.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
47.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
46.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
45.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
45.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
44.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
44.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
44.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
44.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
44.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
43.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
43.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
43.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
42.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
42.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
42.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
42.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
42.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
42.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
42.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
41.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
41.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
41.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
41.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
41.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
41.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
41.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
40.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
40.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
40.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
40.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
39.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
39.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
39.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
39.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
39.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
39.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
39.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
39.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
39.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
38.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
38.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
38.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
38.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
38.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
38.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
37.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
37.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
37.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
37.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
36.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
36.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
36.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
35.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
35.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
35.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
35.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
35.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
35.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
34.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
34.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
34.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
34.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
34.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
34.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
33.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
33.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
33.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
33.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
33.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
33.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
33.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
33.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
33.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
33.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
33.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
32.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
32.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
32.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
32.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
32.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
32.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
32.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
32.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
32.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
31.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
31.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
31.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
31.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
31.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
31.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
31.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
30.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
30.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
30.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
30.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
30.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
30.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
30.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
30.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
30.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
30.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
30.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
30.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
30.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
30.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
30.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
29.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
29.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
29.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
29.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
29.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
29.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
29.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
29.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
29.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
29.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
29.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
29.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
29.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
29.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
29.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
28.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
28.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
28.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
28.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
28.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
28.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
28.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
28.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
28.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
28.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
28.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
28.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
28.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
27.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
27.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
27.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
27.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
27.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
27.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
27.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
27.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
27.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
27.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
27.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
26.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
26.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
26.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
26.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
26.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
26.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
26.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
26.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
26.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
26.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
26.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
26.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
26.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
26.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
26.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
26.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
26.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
26.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
26.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
26.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
25.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
25.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
25.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
25.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
25.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
25.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
25.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
25.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
25.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
25.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
25.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
25.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
24.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
24.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
24.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
24.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
24.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
24.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
24.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
24.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
24.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
24.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
24.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
23.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
23.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
23.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
23.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
23.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
23.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
23.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
23.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
23.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
23.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
23.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
23.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
23.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
22.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
22.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
22.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
22.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
22.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
22.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
22.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
22.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
22.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
21.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
21.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
21.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
21.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
21.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
21.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
21.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
21.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
21.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
21.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
21.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
21.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
21.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
21.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
20.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
20.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
20.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
20.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
20.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
20.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
20.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
20.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
20.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
20.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
20.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
19.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
19.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
19.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
19.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
19.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
19.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
19.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
19.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
19.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
19.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
19.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
19.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
19.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
19.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
19.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
19.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
18.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
18.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
18.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
18.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
18.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
18.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
18.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
18.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
18.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
17.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
17.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
17.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
17.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
17.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
17.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
16.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
16.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
16.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
15.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZNF444 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.4
Number of samples
231
Samples
Sample
Description
TPM
DO45217
0 years, female, NA, stage:3, dead, 270 days
98.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
83.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
69.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
66.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
56.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
53.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
53.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
52.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
52.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
49.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
48.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
47.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
46.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
46.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
45.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
44.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
42.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
41.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
40.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
39.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
39.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
38.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
38.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
37.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
37.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
37.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
35.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
35.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
35.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
34.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
34.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
34.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
34.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
34.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
33.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
33.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
33.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
33.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
31.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
31.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
31.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
31.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
30.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
30.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
30.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
30.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
30.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
29.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
29.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
29.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
29.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
29.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
29.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
29.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
29.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
28.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
28.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
28.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
28.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
28.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
28.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
27.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
27.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
27.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
27.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
27.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
27.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
27.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
27.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
26.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
26.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
26.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
26.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
25.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
25.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
25.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
24.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
24.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
24.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
24.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
24.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
24.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
23.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
23.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
23.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
23.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
23.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
23.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
23.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
23.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
23.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
23.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
23.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
23.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
23.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
23.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
23.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
22.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
22.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
22.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
22.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
22.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
22.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
22.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
21.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
21.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
21.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
21.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
20.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
20.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
20.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
20.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
20.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
20.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
20.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
20.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
20.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
19.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
19.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
19.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
19.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
18.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
18.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
18.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
18.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
18.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
17.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
17.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
16.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
16.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
14.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
14.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
553
Tumor
7.1
554
Normal
6.8
537
Tumor
4.9
538
Normal
4.3
534
Normal
3.7
743
Tumor
3.4
477
Tumor
1.8
1025
Tumor
1.8
1041
Tumor
1.5
737
Tumor
1.5
666
Normal
1.3
857
Tumor
1.2
635
Tumor
1.1
665
Tumor
1.1
967
Tumor
1.1
393
Tumor
1.1
951
Tumor
1.0
536
Normal
1.0
937
Tumor
1.0
527
Tumor
1.0
187
Tumor
1.0
925
Tumor
1.0
661
Tumor
1.0
483
Tumor
1.0
815
Tumor
1.0
1031
Tumor
1.0
965
Tumor
0.9
351
Tumor
0.9
387
Tumor
0.9
267
Tumor
0.8
395
Tumor
0.8
727
Tumor
0.8
975
Tumor
0.8
983
Tumor
0.8
231
Tumor
0.8
195
Tumor
0.8
471
Tumor
0.7
1021
Tumor
0.7
362
Normal
0.7
451
Tumor
0.7
921
Tumor
0.7
185
Tumor
0.7
363
Tumor
0.7
191
Tumor
0.7
943
Tumor
0.7
113
Tumor
0.7
131
Tumor
0.6
463
Tumor
0.6
533
Tumor
0.6
1032
Normal
0.6
671
Tumor
0.6
662
Normal
0.6
112
Tumor
0.6
411
Tumor
0.6
873
Tumor
0.6
535
Tumor
0.6
1043
Tumor
0.5
878
Normal
0.5
433
Tumor
0.5
882
Normal
0.5
724
Normal
0.5
1022
Normal
0.5
915
Tumor
0.5
824
Normal
0.5
865
Tumor
0.5
467
Tumor
0.4
221
Tumor
0.4
355
Tumor
0.4
917
Tumor
0.4
481
Tumor
0.4
695
Tumor
0.4
1042
Normal
0.4
1016
Normal
0.4
715
Tumor
0.4
376
Normal
0.4
861
Tumor
0.3
663
Tumor
0.3
818
Normal
0.3
868
Normal
0.3
1044
Normal
0.3
124
Normal
0.3
1045
Tumor
0.3
914
Normal
0.3
852
Normal
0.3
545
Tumor
0.3
368
Normal
0.3
261
Tumor
0.3
517
Tumor
0.3
428
Normal
0.3
976
Normal
0.3
858
Normal
0.3
414
Normal
0.3
491
Tumor
0.2
446
Normal
0.2
567
Tumor
0.2
884
Normal
0.2
415
Tumor
0.2
217
Tumor
0.2
271
Tumor
0.2
963
Tumor
0.2
664
Normal
0.2
864
Normal
0.2
365
Tumor
0.2
1027
Tumor
0.2
135
Tumor
0.2
1026
Normal
0.2
447
Tumor
0.2
1028
Normal
0.2
343
Tumor
0.2
142
Normal
0.2
952
Normal
0.2
493
Tumor
0.2
391
Tumor
0.2
367
Tumor
0.2
526
Normal
0.2
641
Tumor
0.2
213
Tumor
0.2
863
Tumor
0.1
424
Normal
0.1
383
Tumor
0.1
285
Tumor
0.1
742
Normal
0.1
127
Tumor
0.1
525
Tumor
0.1
728
Normal
0.1
816
Normal
0.1
385
Tumor
0.1
916
Normal
0.1
224
Normal
0.1
982
Normal
0.1
141
Tumor
0.1
524
Normal
0.1
412
Normal
0.1
573
Tumor
0.1
257
Tumor
0.1
444
Normal
0.0
375
Tumor
0.0
136
Normal
0.0
513
Tumor
0.0
422
Normal
0.0
123
Tumor
0.0
218
Normal
0.0
823
Tumor
0.0
268
Normal
0.0
813
Tumor
0.0
912
Normal
0.0
132
Normal
0.0
443
Tumor
0.0
713
Tumor
0.0
455
Tumor
0.0
672
Normal
0.0
361
Tumor
0.0
327
Tumor
0.0
685
Tumor
0.0
851
Tumor
0.0
426
Normal
0.0
877
Tumor
0.0
786
Normal
0.0
911
Tumor
0.0
648
Normal
0.0
785
Tumor
-0.1
966
Normal
-0.1
137
Tumor
-0.1
223
Tumor
-0.1
817
Tumor
-0.1
384
Normal
-0.1
636
Normal
-0.1
617
Tumor
-0.1
171
Tumor
-0.1
464
Normal
-0.1
227
Tumor
-0.1
138
Normal
-0.1
814
Normal
-0.1
647
Tumor
-0.1
738
Normal
-0.1
741
Tumor
-0.1
445
Tumor
-0.1
881
Tumor
-0.1
341
Tumor
-0.1
388
Normal
-0.1
192
Normal
-0.1
686
Normal
-0.1
867
Tumor
-0.1
354
Normal
-0.1
392
Normal
-0.1
514
Normal
-0.1
423
Tumor
-0.1
723
Tumor
-0.2
478
Normal
-0.2
746
Normal
-0.2
386
Normal
-0.2
145
Tumor
-0.2
516
Normal
-0.2
756
Normal
-0.2
366
Normal
-0.2
968
Normal
-0.2
957
Tumor
-0.2
473
Tumor
-0.2
146
Normal
-0.2
396
Normal
-0.2
866
Normal
-0.2
1046
Normal
-0.2
394
Normal
-0.2
557
Tumor
-0.2
697
Tumor
-0.2
696
Normal
-0.2
977
Tumor
-0.2
421
Tumor
-0.2
258
Normal
-0.2
186
Normal
-0.2
262
Normal
-0.2
918
Normal
-0.2
492
Normal
-0.2
778
Normal
-0.2
883
Tumor
-0.2
364
Normal
-0.2
344
Normal
-0.3
352
Normal
-0.3
777
Tumor
-0.3
222
Normal
-0.3
328
Normal
-0.3
286
Normal
-0.3
523
Tumor
-0.3
214
Normal
-0.3
452
Normal
-0.3
515
Tumor
-0.3
232
Normal
-0.3
722
Normal
-0.3
924
Normal
-0.3
126
Normal
-0.3
331
Tumor
-0.3
114
Normal
-0.3
468
Normal
-0.3
125
Tumor
-0.3
188
Normal
-0.3
228
Normal
-0.3
161
Tumor
-0.3
913
Tumor
-0.3
874
Normal
-0.3
755
Tumor
-0.3
128
Normal
-0.3
1013
Tumor
-0.3
162
Normal
-0.3
721
Tumor
-0.3
272
Normal
-0.4
528
Normal
-0.4
358
Normal
-0.4
147
Tumor
-0.4
616
Normal
-0.4
357
Tumor
-0.4
416
Normal
-0.4
494
Normal
-0.4
342
Normal
-0.4
714
Normal
-0.4
572
Normal
-0.4
431
Tumor
-0.4
563
Tumor
-0.4
716
Normal
-0.4
465
Tumor
-0.4
627
Tumor
-0.4
571
Tumor
-0.4
518
Normal
-0.4
212
Normal
-0.4
456
Normal
-0.4
466
Normal
-0.4
568
Normal
-0.4
297
Tumor
-0.4
615
Tumor
-0.4
574
Normal
-0.5
956
Normal
-0.5
862
Normal
-0.5
196
Normal
-0.5
564
Normal
-0.5
745
Tumor
-0.5
436
Normal
-0.5
353
Tumor
-0.5
923
Tumor
-0.5
111
Normal
-0.5
558
Normal
-0.5
953
Tumor
-0.5
356
Normal
-0.5
618
Normal
-0.5
964
Normal
-0.5
1015
Tumor
-0.5
461
Tumor
-0.6
435
Tumor
-0.6
628
Normal
-0.6
425
Tumor
-0.6
148
Normal
-0.6
427
Tumor
-0.6
413
Tumor
-0.6
546
Normal
-0.6
432
Normal
-0.6
434
Normal
-0.6
488
Normal
-0.6
981
Tumor
-0.6
172
Normal
-0.7
642
Normal
-0.7
482
Normal
-0.7
474
Normal
-0.7
283
Tumor
-0.8
955
Tumor
-0.8
958
Normal
-0.8
984
Normal
-0.9
487
Tumor
-0.9
498
Normal
-0.9
922
Normal
-0.9
311
Tumor
-0.9
472
Normal
-0.9
462
Normal
-1.0
312
Normal
-1.0
284
Normal
-1.0
978
Normal
-1.0
1014
Normal
-1.0
698
Normal
-1.1
497
Tumor
-1.1
448
Normal
-1.1
926
Normal
-1.2
211
Tumor
-1.2
938
Normal
-1.2
944
Normal
-1.2
314
Normal
-1.3
277
Tumor
-1.3
278
Normal
-1.4
332
Normal
-1.4
484
Normal
-1.4
298
Normal
-1.4
744
Normal
-1.5
954
Normal
-1.6
313
Tumor
-1.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
