We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBXN6 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
58.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
187.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
141.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
139.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
138.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
130.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
128.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
120.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
117.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
116.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
115.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
115.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
108.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
108.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
107.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
107.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
104.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
103.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
101.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
100.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
99.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
98.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
96.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
96.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
94.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
93.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
93.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
93.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
93.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
93.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
92.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
92.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
92.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
91.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
91.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
91.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
91.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
90.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
90.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
87.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
86.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
86.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
86.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
86.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
85.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
85.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
85.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
83.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
83.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
83.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
83.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
82.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
81.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
81.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
81.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
81.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
81.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
80.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
79.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
79.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
79.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
78.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
78.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
78.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
78.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
77.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
77.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
77.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
76.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
76.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
76.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
76.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
75.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
75.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
75.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
75.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
73.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
73.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
73.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
73.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
73.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
73.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
73.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
72.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
72.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
72.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
72.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
72.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
72.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
71.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
71.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
71.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
71.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
71.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
71.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
71.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
71.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
71.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
71.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
69.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
69.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
69.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
69.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
69.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
69.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
68.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
68.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
68.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
68.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
68.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
68.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
68.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
68.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
67.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
67.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
67.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
67.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
67.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
66.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
66.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
66.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
66.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
66.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
65.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
65.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
65.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
65.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
64.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
64.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
63.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
63.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
63.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
63.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
63.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
62.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
62.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
62.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
62.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
62.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
62.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
61.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
61.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
61.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
61.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
61.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
61.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
61.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
60.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
60.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
60.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
60.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
59.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
59.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
59.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
59.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
59.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
59.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
59.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
59.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
59.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
58.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
58.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
58.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
58.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
58.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
58.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
58.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
57.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
57.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
57.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
57.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
57.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
57.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
57.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
57.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
57.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
57.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
56.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
56.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
56.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
56.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
56.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
56.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
56.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
56.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
55.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
55.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
55.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
55.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
55.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
55.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
55.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
55.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
54.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
54.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
54.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
54.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
54.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
54.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
54.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
54.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
54.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
54.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
53.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
53.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
53.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
53.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
53.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
52.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
52.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
52.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
52.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
52.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
52.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
51.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
51.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
51.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
51.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
51.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
51.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
51.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
51.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
51.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
51.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
51.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
51.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
51.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
51.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
50.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
50.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
50.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
50.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
49.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
49.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
49.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
48.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
48.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
48.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
48.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
47.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
47.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
47.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
47.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
47.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
47.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
47.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
47.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
46.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
46.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
46.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
46.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
46.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
46.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
46.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
45.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
45.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
45.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
45.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
45.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
45.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
45.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
45.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
44.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
44.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
44.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
43.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
43.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
43.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
43.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
43.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
43.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
43.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
43.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
42.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
41.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
41.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
41.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
41.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
41.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
41.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
41.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
40.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
40.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
40.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
40.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
40.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
39.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
39.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
39.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
39.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
39.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
38.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
38.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
38.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
38.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
38.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
38.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
37.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
36.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
36.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
36.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
36.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
35.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
35.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
35.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
35.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
35.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
35.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
34.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
34.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
34.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
34.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
34.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
33.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
33.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
33.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
32.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
32.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
32.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
32.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
31.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
31.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
31.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
31.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
30.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
30.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
30.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
30.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
30.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
30.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
29.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
29.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
29.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
28.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
28.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
27.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
27.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
27.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
26.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
26.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
26.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
26.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
24.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
24.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
23.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
23.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
23.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
23.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
21.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
21.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
21.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
20.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
19.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
18.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
17.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
16.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
16.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
15.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
13.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBXN6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
46.9
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
124.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
118.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
114.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
102.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
102.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
99.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
98.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
97.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
95.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
93.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
92.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
90.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
90.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
86.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
83.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
81.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
79.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
77.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
77.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
77.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
75.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
74.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
73.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
71.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
70.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
70.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
69.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
68.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
67.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
66.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
65.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
62.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
61.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
61.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
61.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
59.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
59.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
59.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
58.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
58.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
58.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
58.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
58.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
57.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
57.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
56.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
56.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
56.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
55.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
55.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
55.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
55.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
54.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
54.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
54.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
54.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
53.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
53.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
53.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
52.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
52.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
52.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
52.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
51.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
51.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
51.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
51.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
51.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
50.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
50.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
50.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
50.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
50.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
50.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
49.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
49.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
49.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
49.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
49.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
48.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
48.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
48.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
48.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
48.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
48.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
48.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
48.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
47.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
47.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
47.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
47.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
47.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
47.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
47.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
46.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
46.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
46.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
46.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
46.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
46.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
46.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
46.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
46.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
46.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
45.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
44.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
44.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
44.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
44.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
44.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
44.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
44.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
44.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
44.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
44.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
43.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
43.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
43.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
43.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
43.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
43.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
42.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
42.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
42.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
42.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
42.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
41.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
41.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
41.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
40.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
40.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
40.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
40.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
40.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
40.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
40.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
39.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
39.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
39.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
39.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
39.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
39.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
38.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
38.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
38.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
38.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
38.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
38.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
38.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
37.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
37.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
37.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
37.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
37.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
37.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
37.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
37.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
37.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
37.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
37.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
37.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
36.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
36.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
36.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
36.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
35.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
35.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
35.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
35.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
35.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
35.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
35.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
35.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
34.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
34.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
34.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
34.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
34.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
34.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
34.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
33.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
33.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
33.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
33.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
33.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
32.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
32.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
32.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
32.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
32.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
31.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
31.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
31.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
31.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
30.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
30.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
30.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
29.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
29.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
29.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
29.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
29.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
28.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
28.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
28.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
28.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
27.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
27.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
27.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
27.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
27.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
26.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
26.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
25.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
25.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
24.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
24.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
24.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
24.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
23.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
23.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
23.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
21.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
21.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
20.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
20.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
19.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
18.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
487
Tumor
0.8
777
Tumor
0.7
863
Tumor
0.6
737
Tumor
0.6
463
Tumor
0.6
741
Tumor
0.5
742
Normal
0.5
915
Tumor
0.5
746
Normal
0.5
365
Tumor
0.5
755
Tumor
0.4
513
Tumor
0.4
723
Tumor
0.4
285
Tumor
0.4
434
Normal
0.4
785
Tumor
0.4
778
Normal
0.4
444
Normal
0.4
617
Tumor
0.4
432
Normal
0.4
738
Normal
0.4
912
Normal
0.4
124
Normal
0.4
261
Tumor
0.4
114
Normal
0.4
858
Normal
0.4
271
Tumor
0.4
111
Normal
0.4
745
Tumor
0.3
914
Normal
0.3
744
Normal
0.3
436
Normal
0.3
125
Tumor
0.3
756
Normal
0.3
695
Tumor
0.3
146
Normal
0.3
818
Normal
0.3
636
Normal
0.3
868
Normal
0.3
728
Normal
0.3
641
Tumor
0.3
478
Normal
0.3
546
Normal
0.3
352
Normal
0.3
698
Normal
0.3
977
Tumor
0.3
642
Normal
0.3
128
Normal
0.3
878
Normal
0.3
1044
Normal
0.3
852
Normal
0.2
824
Normal
0.2
955
Tumor
0.2
141
Tumor
0.2
714
Normal
0.2
627
Tumor
0.2
1022
Normal
0.2
192
Normal
0.2
715
Tumor
0.2
262
Normal
0.2
147
Tumor
0.2
126
Normal
0.2
882
Normal
0.2
616
Normal
0.2
482
Normal
0.2
462
Normal
0.2
137
Tumor
0.2
298
Normal
0.2
142
Normal
0.2
284
Normal
0.2
422
Normal
0.2
662
Normal
0.2
363
Tumor
0.2
456
Normal
0.2
1032
Normal
0.2
538
Normal
0.2
1046
Normal
0.2
268
Normal
0.2
366
Normal
0.2
466
Normal
0.2
958
Normal
0.2
786
Normal
0.2
131
Tumor
0.2
473
Tumor
0.2
1043
Tumor
0.2
414
Normal
0.2
356
Normal
0.2
1016
Normal
0.2
132
Normal
0.2
342
Normal
0.2
272
Normal
0.2
1041
Tumor
0.2
455
Tumor
0.2
916
Normal
0.2
954
Normal
0.2
952
Normal
0.2
394
Normal
0.2
286
Normal
0.2
416
Normal
0.2
472
Normal
0.2
353
Tumor
0.2
368
Normal
0.2
498
Normal
0.2
722
Normal
0.2
138
Normal
0.2
465
Tumor
0.2
816
Normal
0.2
862
Normal
0.2
384
Normal
0.2
976
Normal
0.2
452
Normal
0.2
355
Tumor
0.2
388
Normal
0.2
913
Tumor
0.2
362
Normal
0.2
874
Normal
0.2
956
Normal
0.2
428
Normal
0.2
426
Normal
0.2
494
Normal
0.2
968
Normal
0.2
924
Normal
0.2
672
Normal
0.2
376
Normal
0.2
696
Normal
0.2
884
Normal
0.2
716
Normal
0.2
228
Normal
0.2
937
Tumor
0.2
864
Normal
0.2
481
Tumor
0.2
488
Normal
0.2
364
Normal
0.2
938
Normal
0.2
392
Normal
0.1
222
Normal
0.1
464
Normal
0.1
214
Normal
0.1
451
Tumor
0.1
536
Normal
0.1
344
Normal
0.1
223
Tumor
0.1
1026
Normal
0.1
618
Normal
0.1
1045
Tumor
0.1
686
Normal
0.1
386
Normal
0.1
446
Normal
0.1
964
Normal
0.1
468
Normal
0.1
1015
Tumor
0.1
113
Tumor
0.1
814
Normal
0.1
615
Tumor
0.1
966
Normal
0.1
424
Normal
0.1
1014
Normal
0.1
474
Normal
0.1
186
Normal
0.1
515
Tumor
0.1
162
Normal
0.1
1042
Normal
0.1
224
Normal
0.1
383
Tumor
0.1
944
Normal
0.1
648
Normal
0.1
628
Normal
0.1
984
Normal
0.1
136
Normal
0.1
232
Normal
0.1
867
Tumor
0.1
978
Normal
0.1
666
Normal
0.1
664
Normal
0.1
484
Normal
0.1
448
Normal
0.1
461
Tumor
0.1
358
Normal
0.1
516
Normal
0.1
982
Normal
0.1
258
Normal
0.1
554
Normal
0.1
412
Normal
0.1
148
Normal
0.1
127
Tumor
0.1
721
Tumor
0.1
528
Normal
0.1
572
Normal
0.1
1031
Tumor
0.1
396
Normal
0.1
354
Normal
0.1
943
Tumor
0.1
135
Tumor
0.1
574
Normal
0.1
564
Normal
0.1
568
Normal
0.1
172
Normal
0.1
188
Normal
0.0
212
Normal
0.0
1025
Tumor
0.0
518
Normal
0.0
433
Tumor
0.0
413
Tumor
0.0
423
Tumor
0.0
697
Tumor
0.0
415
Tumor
0.0
558
Normal
0.0
813
Tumor
0.0
145
Tumor
0.0
467
Tumor
0.0
1028
Normal
0.0
926
Normal
0.0
918
Normal
0.0
445
Tumor
0.0
447
Tumor
0.0
421
Tumor
0.0
395
Tumor
0.0
278
Normal
0.0
866
Normal
0.0
227
Tumor
0.0
922
Normal
0.0
571
Tumor
0.0
921
Tumor
0.0
526
Normal
0.0
635
Tumor
0.0
981
Tumor
0.0
881
Tumor
0.0
823
Tumor
0.0
647
Tumor
0.0
312
Normal
0.0
534
Normal
0.0
815
Tumor
-0.1
851
Tumor
-0.1
743
Tumor
-0.1
277
Tumor
-0.1
917
Tumor
-0.1
375
Tumor
-0.1
514
Normal
-0.1
393
Tumor
-0.1
297
Tumor
-0.1
713
Tumor
-0.1
857
Tumor
-0.1
553
Tumor
-0.1
663
Tumor
-0.1
443
Tumor
-0.1
425
Tumor
-0.1
471
Tumor
-0.1
332
Normal
-0.1
112
Tumor
-0.1
865
Tumor
-0.1
267
Tumor
-0.1
187
Tumor
-0.1
185
Tumor
-0.1
341
Tumor
-0.1
314
Normal
-0.1
257
Tumor
-0.1
123
Tumor
-0.1
311
Tumor
-0.1
873
Tumor
-0.2
218
Normal
-0.2
923
Tumor
-0.2
211
Tumor
-0.2
883
Tumor
-0.2
387
Tumor
-0.2
545
Tumor
-0.2
361
Tumor
-0.2
563
Tumor
-0.2
431
Tumor
-0.2
665
Tumor
-0.2
861
Tumor
-0.2
527
Tumor
-0.2
963
Tumor
-0.2
524
Normal
-0.2
483
Tumor
-0.2
724
Normal
-0.2
283
Tumor
-0.2
217
Tumor
-0.2
877
Tumor
-0.2
161
Tumor
-0.2
911
Tumor
-0.2
493
Tumor
-0.3
477
Tumor
-0.3
221
Tumor
-0.3
557
Tumor
-0.3
975
Tumor
-0.3
727
Tumor
-0.3
953
Tumor
-0.3
967
Tumor
-0.3
231
Tumor
-0.3
817
Tumor
-0.3
343
Tumor
-0.3
435
Tumor
-0.3
191
Tumor
-0.3
535
Tumor
-0.3
328
Normal
-0.3
573
Tumor
-0.3
331
Tumor
-0.3
427
Tumor
-0.3
357
Tumor
-0.3
523
Tumor
-0.3
567
Tumor
-0.3
196
Normal
-0.4
925
Tumor
-0.4
411
Tumor
-0.4
1013
Tumor
-0.4
983
Tumor
-0.4
517
Tumor
-0.4
492
Normal
-0.4
1027
Tumor
-0.4
327
Tumor
-0.4
351
Tumor
-0.4
391
Tumor
-0.4
367
Tumor
-0.4
213
Tumor
-0.4
671
Tumor
-0.4
195
Tumor
-0.5
661
Tumor
-0.5
313
Tumor
-0.5
385
Tumor
-0.5
1021
Tumor
-0.5
951
Tumor
-0.6
491
Tumor
-0.6
685
Tumor
-0.6
497
Tumor
-0.6
171
Tumor
-0.6
525
Tumor
-0.7
965
Tumor
-0.8
537
Tumor
-0.8
533
Tumor
-0.8
957
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.