MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:97.8 nTPM
HPA Brain:120.3 nTPM
GTEx:97.8 nTPM
FANTOM5:27.4 Scaled Tags Per Million
Pig:51.6 nTPM
Mouse:34.6 nTPM
Allen mouse:2.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 120.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 95.4
2586 Male, age 75, left hemisphere 141.8
2666 Male, age 74, left hemisphere 107.6
2828 Female, age 72, unknown 101.5
2219 Male, age 76, both hemispheres 99.7
1827 Male, age 72, unknown 93.6
2019 Male, age 18, unknown 87.4
1870 Female, age 42, unknown 81.6
2411 Female, age 72, unknown 81.5
1833 Male, age 53, unknown 80.4
1830 Male, age 51, unknown 78.5
Dorsal raphe nucleus
nTPM: 90.7
1828 Male, age 53, unknown 99.6
2047 Male, age 72, unknown 99.5
2298 Female, age 72, unknown 91.8
2016 Female, age 72, unknown 83.2
2750 Male, age 76, both hemispheres 79.1
Inferior colliculus
nTPM: 77.8
2849 Male, age 72, unknown 79.6
2097 Female, age 72, unknown 77.8
1848 Female, age 42, unknown 77.5
1890 Male, age 53, unknown 76.2
Median raphe nucleus
nTPM: 92.7
2220 Male, age 76, midline 92.7
Periaquaductal grey, anterior
nTPM: 106.4
1795 Male, age 51, unknown 108.4
1947 Male, age 18, unknown 107.3
2502 Female, age 75, unknown 103.5
Periaquaductal grey, dorsal
nTPM: 76.2
1840 Male, age 53, unknown 85.7
2850 Male, age 76, both hemispheres 75.8
1831 Male, age 72, unknown 74.7
2464 Female, age 72, unknown 68.7
Periaquaductal grey, lateral
nTPM: 73.2
2053 Male, age 18, unknown 74.5
2140 Male, age 76, both hemispheres 74.5
2272 Male, age 74, both hemispheres 70.5
Pretectal area
nTPM: 88.6
2007 Male, age 72, unknown 104.6
1817 Female, age 42, unknown 100.3
1816 Male, age 51, unknown 100.0
1944 Female, age 72, unknown 95.3
2667 Female, age 75, unknown 93.3
1815 Male, age 53, unknown 90.8
2407 Male, age 75, both hemispheres 87.6
2825 Male, age 18, unknown 86.9
2224 Female, age 72, unknown 76.8
2273 Male, age 74, both hemispheres 71.4
2316 Male, age 76, right hemisphere 67.8
Red nucleus
nTPM: 87.9
2584 Male, age 75, left hemisphere 103.8
1821 Female, age 72, unknown 93.3
2769 Male, age 72, unknown 91.3
2227 Male, age 72, unknown 90.5
2503 Female, age 72, unknown 90.3
2588 Male, age 74, left hemisphere 88.8
2725 Female, age 75, unknown 88.2
2785 Male, age 18, unknown 88.2
1954 Female, age 42, unknown 84.7
1865 Male, age 51, unknown 84.3
1904 Male, age 53, unknown 80.2
2823 Male, age 76, right hemisphere 70.6
Substantia nigra
nTPM: 120.3
2665 Male, age 74, both hemispheres 165.9
1916 Female, age 42, unknown 161.8
1851 Male, age 51, unknown 136.5
1941 Male, age 53, unknown 121.7
2699 Male, age 18, unknown 120.9
2583 Male, age 75, right hemisphere 108.6
2409 Female, age 72, unknown 103.6
2241 Male, age 72, unknown 97.5
1889 Female, age 72, unknown 96.1
2590 Female, age 75, unknown 90.3
Superior colliculus
nTPM: 89.0
2664 Male, age 75, both hemispheres 124.2
2668 Female, age 75, unknown 109.7
1796 Male, age 53, unknown 98.6
2261 Male, age 18, unknown 89.5
2087 Female, age 72, unknown 89.1
2587 Male, age 74, left hemisphere 80.8
1839 Male, age 51, unknown 78.7
1995 Male, age 72, unknown 74.5
1913 Female, age 42, unknown 73.3
1895 Male, age 76, right hemisphere 71.5
Ventral tegmental area
nTPM: 99.8
1915 Female, age 42, unknown 117.1
2410 Female, age 72, unknown 104.3
1942 Male, age 51, unknown 102.0
2218 Male, age 76, both hemispheres 101.2
2223 Female, age 72, unknown 87.9
2021 Male, age 53, unknown 86.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 97.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 97.8
Samples: 139

Max nTPM: 185.8
Min nTPM: 46.4
Std nTPM: 27.0
Median nTPM: 93.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 185.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 178.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 169.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 157.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 151.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 150.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 147.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 146.0
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 145.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 138.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 136.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 27.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.4
FF:10158-103A5 76 years, female 27.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 51.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 44.5
Samples: 4

Max nTPM: 54.9
Min nTPM: 37.0
Sample A Female 54.9
Sample B Female 37.0
Sample C Male 44.2
Sample D Male 41.9
Midbrain
nTPM: 51.6
Samples: 4

Max nTPM: 66.4
Min nTPM: 40.1
Sample A Female 66.4
Sample B Female 49.1
Sample C Male 50.9
Sample D Male 40.1
Periaqueductal gray
nTPM: 37.8
Samples: 3

Max nTPM: 40.2
Min nTPM: 34.2
Sample B Female 40.2
Sample C Male 39.1
Sample D Male 34.2
Superior colliculi
nTPM: 49.8
Samples: 4

Max nTPM: 58.5
Min nTPM: 38.9
Sample A Female 53.5
Sample B Female 38.9
Sample C Male 58.5
Sample D Male 48.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 34.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.7
Samples: 4

Max nTPM: 39.5
Min nTPM: 30.0
Sample A Male 39.5
Sample B Male 30.0
Sample C Female 32.8
Sample D Female 36.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
69015440 Antisense, RP_050315_01_A04, Mouse strain C57BL/6J (56 days, male) 2.3

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