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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
YIF1B is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
50.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
172.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
143.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
142.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
136.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
135.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
125.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
121.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
120.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
119.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
116.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
112.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
111.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
109.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
104.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
101.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
98.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
98.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
97.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
96.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
96.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
95.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
95.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
93.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
93.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
90.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
90.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
90.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
90.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
89.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
89.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
88.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
87.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
87.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
85.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
85.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
84.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
84.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
82.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
81.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
81.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
81.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
80.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
79.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
78.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
78.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
77.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
77.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
77.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
77.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
77.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
75.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
75.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
73.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
73.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
72.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
72.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
72.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
71.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
70.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
69.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
69.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
69.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
69.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
69.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
69.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
68.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
68.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
67.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
66.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
66.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
66.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
66.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
66.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
65.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
65.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
65.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
65.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
65.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
65.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
65.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
64.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
64.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
64.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
63.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
63.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
62.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
62.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
62.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
62.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
62.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
61.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
61.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
61.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
61.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
61.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
61.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
61.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
61.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
60.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
60.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
60.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
60.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
59.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
59.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
59.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
59.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
59.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
59.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
59.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
59.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
59.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
58.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
58.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
58.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
57.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
57.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
57.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
56.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
56.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
56.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
56.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
56.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
56.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
56.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
55.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
55.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
54.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
54.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
54.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
53.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
53.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
53.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
53.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
53.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
53.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
52.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
52.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
52.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
52.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
52.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
52.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
52.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
51.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
51.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
51.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
51.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
51.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
51.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
51.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
50.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
50.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
49.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
49.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
49.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
49.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
49.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
49.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
49.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
49.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
49.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
48.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
48.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
48.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
48.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
48.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
48.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
47.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
47.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
47.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
47.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
46.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
46.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
46.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
46.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
46.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
45.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
45.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
45.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
45.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
45.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
44.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
44.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
44.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
44.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
44.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
44.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
44.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
44.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
44.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
44.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
44.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
44.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
44.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
43.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
43.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
43.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
43.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
43.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
43.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
42.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
42.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
42.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
42.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
42.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
42.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
42.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
42.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
41.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
41.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
41.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
41.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
41.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
41.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
41.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
41.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
40.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
40.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
40.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
40.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
40.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
40.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
40.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
40.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
39.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
39.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
39.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
39.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
39.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
38.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
38.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
38.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
38.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
38.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
38.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
38.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
38.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
38.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
38.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
37.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
37.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
37.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
37.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
37.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
37.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
37.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
37.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
37.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
36.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
36.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
36.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
35.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
35.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
35.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
35.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
35.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
35.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
35.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
34.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
34.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
34.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
34.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
34.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
34.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
34.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
33.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
33.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
33.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
33.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
33.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
33.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
33.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
32.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
32.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
32.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
32.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
32.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
32.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
32.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
32.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
31.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
31.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
31.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
31.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
31.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
30.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
30.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
30.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
30.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
30.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
30.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
30.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
30.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
30.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
29.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
29.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
29.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
29.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
29.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
29.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
29.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
28.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
28.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
28.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
28.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
27.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
27.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
27.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
27.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
26.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
26.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
26.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
26.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
26.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
25.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
25.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
25.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
25.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
24.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
24.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
24.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
24.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
24.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
24.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
23.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
23.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
22.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
22.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
22.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
21.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
20.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
20.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
19.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
19.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
19.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
19.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
19.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
19.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
19.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
19.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
18.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
18.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
16.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
15.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
YIF1B is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.2
Number of samples
231
Samples
Sample
Description
TPM
DO45285
0 years, male, NA, stage:3, alive, 480 days
281.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
132.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
102.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
83.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
77.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
75.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
72.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
65.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
47.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
33.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
31.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
28.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
26.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
25.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
24.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
23.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
23.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
23.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
23.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
23.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
23.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
22.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
22.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
22.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
21.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
21.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
21.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
21.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
20.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
20.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
19.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
18.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
17.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
13.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
724
Normal
1.6
123
Tumor
1.5
473
Tumor
1.2
171
Tumor
1.0
727
Tumor
0.9
231
Tumor
0.9
695
Tumor
0.9
567
Tumor
0.9
647
Tumor
0.8
571
Tumor
0.8
312
Normal
0.8
341
Tumor
0.8
965
Tumor
0.8
391
Tumor
0.8
487
Tumor
0.7
383
Tumor
0.7
187
Tumor
0.6
617
Tumor
0.6
863
Tumor
0.6
125
Tumor
0.6
443
Tumor
0.6
113
Tumor
0.5
573
Tumor
0.5
665
Tumor
0.5
278
Normal
0.5
353
Tumor
0.5
355
Tumor
0.5
145
Tumor
0.4
663
Tumor
0.4
1027
Tumor
0.4
393
Tumor
0.4
913
Tumor
0.4
261
Tumor
0.4
857
Tumor
0.4
468
Normal
0.4
865
Tumor
0.4
452
Normal
0.4
147
Tumor
0.4
433
Tumor
0.4
285
Tumor
0.3
331
Tumor
0.3
451
Tumor
0.3
213
Tumor
0.3
741
Tumor
0.3
923
Tumor
0.3
351
Tumor
0.3
466
Normal
0.3
685
Tumor
0.3
963
Tumor
0.3
1021
Tumor
0.3
191
Tumor
0.3
467
Tumor
0.3
967
Tumor
0.3
435
Tumor
0.3
421
Tumor
0.3
446
Normal
0.3
635
Tumor
0.3
527
Tumor
0.3
1013
Tumor
0.3
463
Tumor
0.3
721
Tumor
0.3
357
Tumor
0.2
445
Tumor
0.2
745
Tumor
0.2
464
Normal
0.2
523
Tumor
0.2
185
Tumor
0.2
813
Tumor
0.2
277
Tumor
0.2
1045
Tumor
0.2
343
Tumor
0.2
557
Tumor
0.2
456
Normal
0.2
394
Normal
0.2
257
Tumor
0.2
524
Normal
0.2
983
Tumor
0.2
921
Tumor
0.2
361
Tumor
0.2
327
Tumor
0.2
161
Tumor
0.2
861
Tumor
0.2
126
Normal
0.2
755
Tumor
0.2
491
Tumor
0.2
497
Tumor
0.2
953
Tumor
0.2
671
Tumor
0.1
574
Normal
0.1
1043
Tumor
0.1
525
Tumor
0.1
217
Tumor
0.1
388
Normal
0.1
434
Normal
0.1
332
Normal
0.1
427
Tumor
0.1
978
Normal
0.1
188
Normal
0.1
124
Normal
0.1
221
Tumor
0.1
283
Tumor
0.1
534
Normal
0.1
465
Tumor
0.1
627
Tumor
0.1
636
Normal
0.1
444
Normal
0.1
223
Tumor
0.1
968
Normal
0.1
135
Tumor
0.1
866
Normal
0.1
436
Normal
0.1
455
Tumor
0.1
396
Normal
0.1
141
Tumor
0.0
392
Normal
0.0
474
Normal
0.0
262
Normal
0.0
363
Tumor
0.0
564
Normal
0.0
563
Tumor
0.0
218
Normal
0.0
477
Tumor
0.0
111
Normal
0.0
127
Tumor
0.0
112
Tumor
0.0
386
Normal
0.0
268
Normal
0.0
661
Tumor
0.0
568
Normal
0.0
982
Normal
0.0
354
Normal
0.0
1016
Normal
0.0
526
Normal
0.0
195
Tumor
0.0
713
Tumor
0.0
536
Normal
0.0
964
Normal
0.0
1015
Tumor
0.0
344
Normal
0.0
432
Normal
0.0
984
Normal
0.0
697
Tumor
0.0
192
Normal
0.0
535
Tumor
0.0
186
Normal
0.0
481
Tumor
0.0
267
Tumor
0.0
214
Normal
0.0
137
Tumor
0.0
222
Normal
0.0
981
Tumor
0.0
558
Normal
-0.1
666
Normal
-0.1
615
Tumor
-0.1
211
Tumor
-0.1
851
Tumor
-0.1
883
Tumor
-0.1
976
Normal
-0.1
958
Normal
-0.1
814
Normal
-0.1
114
Normal
-0.1
224
Normal
-0.1
1014
Normal
-0.1
817
Tumor
-0.1
128
Normal
-0.1
715
Tumor
-0.1
148
Normal
-0.1
232
Normal
-0.1
368
Normal
-0.1
172
Normal
-0.1
415
Tumor
-0.1
915
Tumor
-0.1
411
Tumor
-0.1
873
Tumor
-0.1
258
Normal
-0.1
914
Normal
-0.1
868
Normal
-0.1
648
Normal
-0.1
395
Tumor
-0.1
311
Tumor
-0.1
196
Normal
-0.1
146
Normal
-0.1
385
Tumor
-0.1
1044
Normal
-0.1
722
Normal
-0.1
662
Normal
-0.1
431
Tumor
-0.1
528
Normal
-0.1
877
Tumor
-0.1
664
Normal
-0.1
672
Normal
-0.1
132
Normal
-0.1
313
Tumor
-0.1
413
Tumor
-0.1
517
Tumor
-0.1
911
Tumor
-0.1
358
Normal
-0.1
286
Normal
-0.2
777
Tumor
-0.2
138
Normal
-0.2
642
Normal
-0.2
628
Normal
-0.2
284
Normal
-0.2
271
Tumor
-0.2
975
Tumor
-0.2
387
Tumor
-0.2
533
Tumor
-0.2
864
Normal
-0.2
136
Normal
-0.2
498
Normal
-0.2
686
Normal
-0.2
142
Normal
-0.2
352
Normal
-0.2
742
Normal
-0.2
162
Normal
-0.2
912
Normal
-0.2
488
Normal
-0.2
744
Normal
-0.2
616
Normal
-0.2
572
Normal
-0.2
365
Tumor
-0.2
1041
Tumor
-0.2
696
Normal
-0.2
943
Tumor
-0.2
881
Tumor
-0.2
884
Normal
-0.2
937
Tumor
-0.2
1046
Normal
-0.2
342
Normal
-0.2
618
Normal
-0.2
1028
Normal
-0.2
728
Normal
-0.2
716
Normal
-0.2
484
Normal
-0.2
447
Tumor
-0.2
425
Tumor
-0.2
364
Normal
-0.2
786
Normal
-0.2
977
Tumor
-0.2
272
Normal
-0.2
546
Normal
-0.3
461
Tumor
-0.3
516
Normal
-0.3
314
Normal
-0.3
514
Normal
-0.3
518
Normal
-0.3
472
Normal
-0.3
954
Normal
-0.3
944
Normal
-0.3
922
Normal
-0.3
375
Tumor
-0.3
966
Normal
-0.3
1032
Normal
-0.3
448
Normal
-0.3
951
Tumor
-0.3
538
Normal
-0.3
482
Normal
-0.3
362
Normal
-0.3
924
Normal
-0.3
925
Tumor
-0.3
641
Tumor
-0.3
492
Normal
-0.3
328
Normal
-0.3
1026
Normal
-0.3
212
Normal
-0.3
858
Normal
-0.3
478
Normal
-0.3
376
Normal
-0.3
356
Normal
-0.3
1022
Normal
-0.3
918
Normal
-0.3
723
Tumor
-0.3
537
Tumor
-0.3
756
Normal
-0.3
852
Normal
-0.3
1031
Tumor
-0.3
785
Tumor
-0.3
367
Tumor
-0.3
483
Tumor
-0.4
698
Normal
-0.4
494
Normal
-0.4
874
Normal
-0.4
815
Tumor
-0.4
882
Normal
-0.4
228
Normal
-0.4
1042
Normal
-0.4
227
Tumor
-0.4
955
Tumor
-0.4
926
Normal
-0.4
816
Normal
-0.4
553
Tumor
-0.4
956
Normal
-0.4
493
Tumor
-0.4
957
Tumor
-0.4
862
Normal
-0.4
416
Normal
-0.4
554
Normal
-0.4
1025
Tumor
-0.4
414
Normal
-0.4
818
Normal
-0.4
422
Normal
-0.4
462
Normal
-0.4
738
Normal
-0.4
412
Normal
-0.4
938
Normal
-0.5
916
Normal
-0.5
824
Normal
-0.5
131
Tumor
-0.5
823
Tumor
-0.5
428
Normal
-0.5
917
Tumor
-0.5
513
Tumor
-0.5
778
Normal
-0.5
426
Normal
-0.5
423
Tumor
-0.5
424
Normal
-0.5
714
Normal
-0.5
952
Normal
-0.5
297
Tumor
-0.5
545
Tumor
-0.5
737
Tumor
-0.5
384
Normal
-0.6
743
Tumor
-0.6
867
Tumor
-0.6
746
Normal
-0.6
515
Tumor
-0.6
366
Normal
-0.6
298
Normal
-0.6
878
Normal
-0.7
471
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
