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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP1R14A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
174.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
66.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
65.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
62.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
57.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
55.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
51.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
51.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
51.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
49.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
45.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
42.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
39.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
37.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
36.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
35.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
33.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
32.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
32.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
31.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
31.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
28.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
28.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
27.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
27.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
27.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
26.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
26.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
26.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
26.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
26.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
25.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
25.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
25.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
24.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
24.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
23.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
22.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
22.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
22.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
21.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
21.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
21.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
21.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
20.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
20.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
19.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
19.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
19.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
19.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
19.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
19.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
18.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
18.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
18.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
18.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
18.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
17.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
17.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
17.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
16.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
15.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
14.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
12.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
12.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
12.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
11.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
11.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
7.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
5.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
3.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
2.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
2.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
1.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP1R14A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.0
Number of samples
231
Samples
Sample
Description
TPM
DO48747
0 years, male, NA, stage:3, alive, 540 days
37.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
35.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
31.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
31.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
28.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
26.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
26.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
26.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
26.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
24.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
24.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
20.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
14.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
5.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
4.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
4.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
3.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
3.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
3.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
3.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
3.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
2.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
2.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
2.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
2.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
2.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
2.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
2.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
2.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
2.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
2.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
2.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
2.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
1.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
1.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
1.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
1.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
1.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
1.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
1.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
1.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
1.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
1.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
1.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
1.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
1.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
341
Tumor
1.9
536
Normal
1.7
385
Tumor
1.6
393
Tumor
1.5
463
Tumor
1.1
563
Tumor
1.1
478
Normal
1.1
883
Tumor
1.1
535
Tumor
1.0
297
Tumor
1.0
192
Normal
1.0
185
Tumor
1.0
958
Normal
1.0
455
Tumor
1.0
223
Tumor
1.0
817
Tumor
0.9
1028
Normal
0.9
545
Tumor
0.9
538
Normal
0.8
982
Normal
0.8
923
Tumor
0.8
572
Normal
0.8
498
Normal
0.8
1045
Tumor
0.8
421
Tumor
0.8
916
Normal
0.8
434
Normal
0.8
917
Tumor
0.7
311
Tumor
0.7
881
Tumor
0.7
124
Normal
0.7
852
Normal
0.7
327
Tumor
0.7
344
Normal
0.7
744
Normal
0.7
627
Tumor
0.6
785
Tumor
0.6
553
Tumor
0.6
924
Normal
0.6
615
Tumor
0.6
444
Normal
0.6
975
Tumor
0.6
823
Tumor
0.6
943
Tumor
0.6
415
Tumor
0.6
558
Normal
0.6
642
Normal
0.5
697
Tumor
0.5
447
Tumor
0.5
386
Normal
0.5
671
Tumor
0.5
814
Normal
0.5
525
Tumor
0.5
516
Normal
0.5
354
Normal
0.5
882
Normal
0.4
874
Normal
0.4
715
Tumor
0.4
963
Tumor
0.4
574
Normal
0.4
884
Normal
0.4
641
Tumor
0.4
672
Normal
0.4
448
Normal
0.4
524
Normal
0.4
343
Tumor
0.4
922
Normal
0.4
1015
Tumor
0.4
492
Normal
0.3
468
Normal
0.3
224
Normal
0.3
984
Normal
0.3
716
Normal
0.3
617
Tumor
0.3
913
Tumor
0.3
816
Normal
0.3
857
Tumor
0.3
362
Normal
0.3
394
Normal
0.3
968
Normal
0.3
778
Normal
0.3
446
Normal
0.3
866
Normal
0.3
568
Normal
0.3
471
Tumor
0.3
878
Normal
0.3
467
Tumor
0.3
746
Normal
0.3
461
Tumor
0.3
456
Normal
0.3
364
Normal
0.3
355
Tumor
0.3
375
Tumor
0.3
1032
Normal
0.3
952
Normal
0.2
1044
Normal
0.2
813
Tumor
0.2
696
Normal
0.2
214
Normal
0.2
145
Tumor
0.2
188
Normal
0.2
723
Tumor
0.2
412
Normal
0.2
383
Tumor
0.2
268
Normal
0.2
918
Normal
0.2
284
Normal
0.2
628
Normal
0.2
554
Normal
0.2
956
Normal
0.2
546
Normal
0.2
138
Normal
0.2
976
Normal
0.2
514
Normal
0.2
432
Normal
0.2
466
Normal
0.1
148
Normal
0.1
433
Tumor
0.1
1042
Normal
0.1
944
Normal
0.1
367
Tumor
0.1
228
Normal
0.1
786
Normal
0.1
212
Normal
0.1
352
Normal
0.1
137
Tumor
0.1
742
Normal
0.1
483
Tumor
0.1
436
Normal
0.1
218
Normal
0.1
528
Normal
0.1
738
Normal
0.1
635
Tumor
0.1
954
Normal
0.0
328
Normal
0.0
721
Tumor
0.0
146
Normal
0.0
126
Normal
0.0
396
Normal
0.0
211
Tumor
0.0
921
Tumor
0.0
666
Normal
0.0
392
Normal
0.0
925
Tumor
0.0
1026
Normal
0.0
662
Normal
0.0
332
Normal
0.0
141
Tumor
0.0
368
Normal
0.0
1022
Normal
0.0
186
Normal
0.0
366
Normal
0.0
357
Tumor
0.0
365
Tumor
0.0
862
Normal
0.0
424
Normal
0.0
262
Normal
0.0
136
Normal
0.0
864
Normal
-0.1
474
Normal
-0.1
818
Normal
-0.1
926
Normal
-0.1
384
Normal
-0.1
686
Normal
-0.1
142
Normal
-0.1
272
Normal
-0.1
515
Tumor
-0.1
728
Normal
-0.1
867
Tumor
-0.1
564
Normal
-0.1
517
Tumor
-0.1
664
Normal
-0.1
964
Normal
-0.1
491
Tumor
-0.1
127
Tumor
-0.1
111
Normal
-0.1
966
Normal
-0.1
951
Tumor
-0.1
571
Tumor
-0.1
363
Tumor
-0.1
426
Normal
-0.1
353
Tumor
-0.1
395
Tumor
-0.1
342
Normal
-0.1
195
Tumor
-0.1
518
Normal
-0.2
391
Tumor
-0.2
863
Tumor
-0.2
978
Normal
-0.2
428
Normal
-0.2
636
Normal
-0.2
331
Tumor
-0.2
213
Tumor
-0.2
376
Normal
-0.2
938
Normal
-0.2
714
Normal
-0.2
526
Normal
-0.2
981
Tumor
-0.2
616
Normal
-0.2
756
Normal
-0.2
172
Normal
-0.2
1014
Normal
-0.2
534
Normal
-0.2
356
Normal
-0.2
452
Normal
-0.2
464
Normal
-0.2
414
Normal
-0.2
416
Normal
-0.2
912
Normal
-0.2
472
Normal
-0.2
162
Normal
-0.2
557
Tumor
-0.2
618
Normal
-0.2
914
Normal
-0.2
361
Tumor
-0.2
187
Tumor
-0.2
868
Normal
-0.2
286
Normal
-0.3
388
Normal
-0.3
427
Tumor
-0.3
422
Normal
-0.3
484
Normal
-0.3
488
Normal
-0.3
128
Normal
-0.3
232
Normal
-0.3
494
Normal
-0.3
278
Normal
-0.3
493
Tumor
-0.4
648
Normal
-0.4
161
Tumor
-0.4
258
Normal
-0.4
695
Tumor
-0.4
413
Tumor
-0.4
513
Tumor
-0.4
977
Tumor
-0.4
222
Normal
-0.4
777
Tumor
-0.4
698
Normal
-0.4
462
Normal
-0.4
191
Tumor
-0.4
955
Tumor
-0.4
312
Normal
-0.5
1016
Normal
-0.5
497
Tumor
-0.5
114
Normal
-0.5
298
Normal
-0.5
132
Normal
-0.5
824
Normal
-0.5
196
Normal
-0.5
873
Tumor
-0.5
722
Normal
-0.5
387
Tumor
-0.5
423
Tumor
-0.5
314
Normal
-0.5
425
Tumor
-0.5
537
Tumor
-0.5
1027
Tumor
-0.6
135
Tumor
-0.6
647
Tumor
-0.6
451
Tumor
-0.6
573
Tumor
-0.6
431
Tumor
-0.6
277
Tumor
-0.6
527
Tumor
-0.6
482
Normal
-0.6
915
Tumor
-0.6
465
Tumor
-0.6
983
Tumor
-0.7
487
Tumor
-0.7
665
Tumor
-0.7
445
Tumor
-0.7
481
Tumor
-0.7
435
Tumor
-0.7
351
Tumor
-0.7
358
Normal
-0.7
858
Normal
-0.7
861
Tumor
-0.7
567
Tumor
-0.8
685
Tumor
-0.8
113
Tumor
-0.8
713
Tumor
-0.8
1031
Tumor
-0.8
953
Tumor
-0.8
477
Tumor
-0.8
261
Tumor
-0.8
737
Tumor
-0.8
877
Tumor
-0.9
473
Tumor
-0.9
745
Tumor
-0.9
727
Tumor
-0.9
1021
Tumor
-0.9
271
Tumor
-0.9
911
Tumor
-0.9
221
Tumor
-0.9
231
Tumor
-1.0
741
Tumor
-1.0
1046
Normal
-1.0
965
Tumor
-1.0
755
Tumor
-1.0
171
Tumor
-1.0
1013
Tumor
-1.0
217
Tumor
-1.0
112
Tumor
-1.1
411
Tumor
-1.1
147
Tumor
-1.1
957
Tumor
-1.1
523
Tumor
-1.1
443
Tumor
-1.1
967
Tumor
-1.2
257
Tumor
-1.2
1041
Tumor
-1.2
937
Tumor
-1.2
1025
Tumor
-1.2
724
Normal
-1.2
125
Tumor
-1.3
533
Tumor
-1.3
227
Tumor
-1.4
123
Tumor
-1.4
1043
Tumor
-1.4
743
Tumor
-1.4
851
Tumor
-1.4
313
Tumor
-1.5
815
Tumor
-1.6
865
Tumor
-1.7
663
Tumor
-1.7
285
Tumor
-1.8
131
Tumor
-2.0
283
Tumor
-2.1
267
Tumor
-2.1
661
Tumor
-2.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
