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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
9.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
5.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
3.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
2.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
2.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
2.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
2.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
1.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
1.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
1.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
1.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
1.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
1.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
1.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
1.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
1.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CDC42EP5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.2
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
31.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
21.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
6.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
4.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
4.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
3.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
3.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
3.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
3.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
3.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
3.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
3.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
2.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
2.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
2.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
2.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
2.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
2.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
2.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
2.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
2.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
2.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
2.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
2.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
2.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
2.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
1.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
1.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
1.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
1.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
1.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
1.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
1.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
1.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
1.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
1.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
1.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
1.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
1.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
1.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
1.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
1.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
1.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
1.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
1.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
1.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
1.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
1.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
1.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
1.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
1.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
1.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
1.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
1.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
1.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
1.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
1.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
1.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
1.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
1.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
1.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
1.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
1.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
1.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
186
Normal
1.6
192
Normal
1.1
672
Normal
1.0
536
Normal
0.9
455
Tumor
0.9
478
Normal
0.8
545
Tumor
0.8
944
Normal
0.8
491
Tumor
0.8
498
Normal
0.8
852
Normal
0.8
538
Normal
0.8
823
Tumor
0.7
1028
Normal
0.7
984
Normal
0.7
1044
Normal
0.7
344
Normal
0.7
297
Tumor
0.7
881
Tumor
0.6
554
Normal
0.6
354
Normal
0.6
488
Normal
0.6
943
Tumor
0.6
311
Tumor
0.6
857
Tumor
0.6
383
Tumor
0.6
384
Normal
0.6
1042
Normal
0.6
954
Normal
0.5
816
Normal
0.5
368
Normal
0.5
434
Normal
0.5
814
Normal
0.5
662
Normal
0.5
516
Normal
0.5
461
Tumor
0.5
671
Tumor
0.5
494
Normal
0.5
444
Normal
0.5
817
Tumor
0.5
553
Tumor
0.5
666
Normal
0.4
874
Normal
0.4
362
Normal
0.4
913
Tumor
0.4
492
Normal
0.4
188
Normal
0.4
884
Normal
0.4
1045
Tumor
0.4
483
Tumor
0.4
958
Normal
0.4
456
Normal
0.4
1022
Normal
0.4
938
Normal
0.4
366
Normal
0.4
952
Normal
0.4
628
Normal
0.4
331
Tumor
0.4
664
Normal
0.4
698
Normal
0.4
376
Normal
0.4
474
Normal
0.4
642
Normal
0.4
524
Normal
0.4
525
Tumor
0.4
185
Tumor
0.4
493
Tumor
0.3
627
Tumor
0.3
1032
Normal
0.3
528
Normal
0.3
1046
Normal
0.3
976
Normal
0.3
868
Normal
0.3
641
Tumor
0.3
447
Tumor
0.3
818
Normal
0.3
472
Normal
0.3
448
Normal
0.3
1016
Normal
0.3
497
Tumor
0.3
982
Normal
0.3
878
Normal
0.3
862
Normal
0.3
484
Normal
0.3
312
Normal
0.3
352
Normal
0.2
534
Normal
0.2
697
Tumor
0.2
978
Normal
0.2
365
Tumor
0.2
375
Tumor
0.2
172
Normal
0.2
975
Tumor
0.2
636
Normal
0.2
956
Normal
0.2
187
Tumor
0.2
446
Normal
0.2
882
Normal
0.2
574
Normal
0.2
563
Tumor
0.2
864
Normal
0.2
858
Normal
0.2
514
Normal
0.2
546
Normal
0.2
1014
Normal
0.2
866
Normal
0.2
1015
Tumor
0.1
433
Tumor
0.1
213
Tumor
0.1
778
Normal
0.1
912
Normal
0.1
1026
Normal
0.1
343
Tumor
0.1
487
Tumor
0.1
468
Normal
0.1
618
Normal
0.1
467
Tumor
0.1
191
Tumor
0.1
278
Normal
0.1
195
Tumor
0.1
786
Normal
0.1
647
Tumor
0.1
353
Tumor
0.1
746
Normal
0.1
966
Normal
0.1
616
Normal
0.1
564
Normal
0.1
648
Normal
0.1
162
Normal
0.1
214
Normal
0.1
696
Normal
0.1
482
Normal
0.1
452
Normal
0.1
161
Tumor
0.1
218
Normal
0.1
436
Normal
0.1
863
Tumor
0.0
665
Tumor
0.0
298
Normal
0.0
341
Tumor
0.0
572
Normal
0.0
148
Normal
0.0
824
Normal
0.0
914
Normal
0.0
785
Tumor
0.0
714
Normal
0.0
968
Normal
0.0
466
Normal
0.0
568
Normal
0.0
963
Tumor
0.0
883
Tumor
0.0
471
Tumor
0.0
518
Normal
0.0
813
Tumor
0.0
756
Normal
0.0
981
Tumor
0.0
526
Normal
0.0
964
Normal
0.0
432
Normal
0.0
361
Tumor
0.0
535
Tumor
0.0
558
Normal
0.0
716
Normal
0.0
686
Normal
-0.1
431
Tumor
-0.1
721
Tumor
-0.1
314
Normal
-0.1
464
Normal
-0.1
615
Tumor
-0.1
222
Normal
-0.1
332
Normal
-0.1
367
Tumor
-0.1
196
Normal
-0.1
515
Tumor
-0.1
342
Normal
-0.1
357
Tumor
-0.1
617
Tumor
-0.1
1043
Tumor
-0.1
473
Tumor
-0.1
217
Tumor
-0.1
877
Tumor
-0.1
983
Tumor
-0.1
462
Normal
-0.2
955
Tumor
-0.2
513
Tumor
-0.2
722
Normal
-0.2
1021
Tumor
-0.2
663
Tumor
-0.2
358
Normal
-0.2
221
Tumor
-0.2
977
Tumor
-0.2
477
Tumor
-0.2
451
Tumor
-0.2
443
Tumor
-0.2
1041
Tumor
-0.2
867
Tumor
-0.3
861
Tumor
-0.3
481
Tumor
-0.3
445
Tumor
-0.3
715
Tumor
-0.3
1013
Tumor
-0.3
313
Tumor
-0.3
1025
Tumor
-0.3
463
Tumor
-0.3
745
Tumor
-0.4
527
Tumor
-0.4
911
Tumor
-0.4
661
Tumor
-0.4
557
Tumor
-0.4
277
Tumor
-0.4
815
Tumor
-0.4
937
Tumor
-0.5
713
Tumor
-0.5
517
Tumor
-0.5
465
Tumor
-0.5
537
Tumor
-0.5
171
Tumor
-0.5
873
Tumor
-0.5
965
Tumor
-0.5
533
Tumor
-0.6
1031
Tumor
-0.6
851
Tumor
-0.6
777
Tumor
-0.6
435
Tumor
-0.6
567
Tumor
-0.6
685
Tumor
-0.6
865
Tumor
-0.6
755
Tumor
-0.7
571
Tumor
-0.7
695
Tumor
-0.7
951
Tumor
-0.7
957
Tumor
-0.7
635
Tumor
-0.7
147
Tumor
-0.7
523
Tumor
-0.8
351
Tumor
-0.9
967
Tumor
-0.9
953
Tumor
-0.9
1027
Tumor
-1.0
573
Tumor
-1.0
231
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
142
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
268
Normal
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
737
Tumor
N/A
738
Normal
N/A
741
Tumor
N/A
742
Normal
N/A
743
Tumor
N/A
744
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
415
Tumor
N/A
416
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
211
Tumor
N/A
212
Normal
N/A
223
Tumor
N/A
224
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
