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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMC4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
131.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
103.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
88.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
86.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
73.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
55.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
51.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
30.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
30.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
28.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
27.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
4.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
4.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
2.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMC4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.9
Number of samples
231
Samples
Sample
Description
TPM
DO45289
0 years, female, NA, stage:3, alive, 360 days
191.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
140.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
134.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
111.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
94.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
80.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
80.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
72.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
65.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
61.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
59.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
51.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
50.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
49.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
48.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
48.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
41.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
39.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
35.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
35.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
34.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
31.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
24.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
24.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
23.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
23.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
3.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
2.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
2.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
2.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
2.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
2.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
2.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
1.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
1.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
1.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
1.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
1.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
1.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
1.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
1.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
1.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
1.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
1.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
1.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
1.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
1.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
1.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
1.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
1.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
1.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
1.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
1.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
1.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
1.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
975
Tumor
3.7
641
Tumor
3.6
553
Tumor
3.5
921
Tumor
3.2
221
Tumor
3.0
817
Tumor
3.0
471
Tumor
2.9
951
Tumor
2.7
1031
Tumor
2.7
271
Tumor
2.4
1025
Tumor
2.4
416
Normal
2.2
188
Normal
1.8
881
Tumor
1.6
331
Tumor
1.5
883
Tumor
1.5
386
Normal
1.3
455
Tumor
1.2
385
Tumor
1.1
452
Normal
1.1
456
Normal
1.0
312
Normal
0.9
877
Tumor
0.9
468
Normal
0.9
1042
Normal
0.9
395
Tumor
0.8
697
Tumor
0.8
465
Tumor
0.7
618
Normal
0.7
222
Normal
0.7
956
Normal
0.7
466
Normal
0.7
415
Tumor
0.7
1021
Tumor
0.6
852
Normal
0.6
464
Normal
0.5
214
Normal
0.5
412
Normal
0.5
262
Normal
0.5
451
Tumor
0.5
1022
Normal
0.5
976
Normal
0.4
463
Tumor
0.4
1045
Tumor
0.4
393
Tumor
0.4
314
Normal
0.4
278
Normal
0.4
192
Normal
0.4
268
Normal
0.3
328
Normal
0.3
516
Normal
0.3
1032
Normal
0.3
818
Normal
0.2
857
Tumor
0.2
1046
Normal
0.2
467
Tumor
0.2
411
Tumor
0.1
272
Normal
0.1
944
Normal
0.1
554
Normal
0.1
474
Normal
0.1
172
Normal
0.1
545
Tumor
0.1
524
Normal
0.1
918
Normal
0.1
258
Normal
0.1
148
Normal
0.0
952
Normal
0.0
916
Normal
0.0
882
Normal
0.0
824
Normal
0.0
914
Normal
0.0
912
Normal
0.0
185
Tumor
0.0
217
Tumor
0.0
332
Normal
0.0
884
Normal
0.0
481
Tumor
0.0
536
Normal
0.0
816
Normal
0.0
218
Normal
0.0
267
Tumor
-0.1
472
Normal
-0.1
534
Normal
-0.1
514
Normal
-0.1
922
Normal
-0.1
297
Tumor
-0.1
298
Normal
-0.1
528
Normal
-0.1
478
Normal
-0.1
967
Tumor
-0.1
546
Normal
-0.1
878
Normal
-0.2
356
Normal
-0.2
232
Normal
-0.2
364
Normal
-0.2
954
Normal
-0.2
815
Tumor
-0.2
213
Tumor
-0.2
447
Tumor
-0.2
1026
Normal
-0.2
462
Normal
-0.2
968
Normal
-0.2
924
Normal
-0.2
926
Normal
-0.2
938
Normal
-0.3
195
Tumor
-0.3
1028
Normal
-0.3
1044
Normal
-0.3
277
Tumor
-0.3
518
Normal
-0.3
388
Normal
-0.3
527
Tumor
-0.3
448
Normal
-0.3
858
Normal
-0.3
917
Tumor
-0.3
461
Tumor
-0.3
616
Normal
-0.3
823
Tumor
-0.3
482
Normal
-0.4
538
Normal
-0.4
698
Normal
-0.4
196
Normal
-0.4
392
Normal
-0.4
966
Normal
-0.4
147
Tumor
-0.4
955
Tumor
-0.4
396
Normal
-0.4
394
Normal
-0.5
477
Tumor
-0.5
257
Tumor
-0.5
851
Tumor
-0.5
231
Tumor
-0.5
958
Normal
-0.5
517
Tumor
-0.5
261
Tumor
-0.5
911
Tumor
-0.6
311
Tumor
-0.6
628
Normal
-0.6
515
Tumor
-0.6
943
Tumor
-0.6
964
Normal
-0.6
526
Normal
-0.6
355
Tumor
-0.6
963
Tumor
-0.6
363
Tumor
-0.6
533
Tumor
-0.6
327
Tumor
-0.6
525
Tumor
-0.6
636
Normal
-0.7
513
Tumor
-0.7
523
Tumor
-0.7
627
Tumor
-0.7
913
Tumor
-0.7
1027
Tumor
-0.7
186
Normal
-0.8
191
Tumor
-0.8
617
Tumor
-0.8
537
Tumor
-0.8
635
Tumor
-0.8
391
Tumor
-0.8
313
Tumor
-0.8
615
Tumor
-0.9
162
Normal
-0.9
473
Tumor
-0.9
925
Tumor
-0.9
937
Tumor
-0.9
1043
Tumor
-0.9
915
Tumor
-0.9
953
Tumor
-1.0
965
Tumor
-1.0
535
Tumor
-1.1
923
Tumor
-1.1
387
Tumor
-1.1
187
Tumor
-1.1
957
Tumor
-1.2
161
Tumor
-1.3
171
Tumor
-1.3
1041
Tumor
-1.6
351
Tumor
N/A
352
Normal
N/A
111
Normal
N/A
353
Tumor
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
114
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
483
Tumor
N/A
484
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
141
Tumor
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
721
Tumor
N/A
722
Normal
N/A
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
977
Tumor
N/A
978
Normal
N/A
737
Tumor
N/A
738
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
744
Normal
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
755
Tumor
N/A
756
Normal
N/A
642
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
777
Tumor
N/A
778
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
666
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
432
Normal
N/A
433
Tumor
N/A
434
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
571
Tumor
N/A
572
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
574
Normal
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
343
Tumor
N/A
223
Tumor
N/A
344
Normal
N/A
224
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
