MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.1 nTPM
HPA Brain:57.9 nTPM
GTEx:8.1 nTPM
FANTOM5:24.9 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 57.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.2
1827 Male, age 72, unknown 66.0
2666 Male, age 74, left hemisphere 65.5
1833 Male, age 53, unknown 60.9
1830 Male, age 51, unknown 60.8
2411 Female, age 72, unknown 56.0
2828 Female, age 72, unknown 56.0
2219 Male, age 76, both hemispheres 55.0
1870 Female, age 42, unknown 50.6
2586 Male, age 75, left hemisphere 50.2
2019 Male, age 18, unknown 41.6
Dorsal raphe nucleus
nTPM: 47.3
2750 Male, age 76, both hemispheres 52.2
2298 Female, age 72, unknown 49.6
2016 Female, age 72, unknown 48.7
1828 Male, age 53, unknown 46.3
2047 Male, age 72, unknown 39.6
Inferior colliculus
nTPM: 54.0
1890 Male, age 53, unknown 56.2
2849 Male, age 72, unknown 55.0
1848 Female, age 42, unknown 53.2
2097 Female, age 72, unknown 51.4
Median raphe nucleus
nTPM: 55.9
2220 Male, age 76, midline 55.9
Periaquaductal grey, anterior
nTPM: 49.1
1947 Male, age 18, unknown 58.2
2502 Female, age 75, unknown 44.8
1795 Male, age 51, unknown 44.2
Periaquaductal grey, dorsal
nTPM: 52.3
1831 Male, age 72, unknown 56.2
2464 Female, age 72, unknown 54.2
2850 Male, age 76, both hemispheres 52.2
1840 Male, age 53, unknown 46.7
Periaquaductal grey, lateral
nTPM: 52.9
2053 Male, age 18, unknown 61.1
2140 Male, age 76, both hemispheres 50.0
2272 Male, age 74, both hemispheres 47.6
Pretectal area
nTPM: 57.9
1815 Male, age 53, unknown 66.7
1817 Female, age 42, unknown 63.1
2007 Male, age 72, unknown 61.7
2825 Male, age 18, unknown 58.9
1816 Male, age 51, unknown 58.6
2667 Female, age 75, unknown 57.6
2316 Male, age 76, right hemisphere 57.2
2407 Male, age 75, both hemispheres 56.6
1944 Female, age 72, unknown 53.7
2224 Female, age 72, unknown 52.4
2273 Male, age 74, both hemispheres 50.3
Red nucleus
nTPM: 56.5
2725 Female, age 75, unknown 66.8
2588 Male, age 74, left hemisphere 65.4
2823 Male, age 76, right hemisphere 61.6
2503 Female, age 72, unknown 60.0
2584 Male, age 75, left hemisphere 58.4
1865 Male, age 51, unknown 56.3
1821 Female, age 72, unknown 55.5
1954 Female, age 42, unknown 53.1
1904 Male, age 53, unknown 52.6
2227 Male, age 72, unknown 52.2
2769 Male, age 72, unknown 49.3
2785 Male, age 18, unknown 46.5
Substantia nigra
nTPM: 57.4
2241 Male, age 72, unknown 69.3
2699 Male, age 18, unknown 61.5
1889 Female, age 72, unknown 58.8
2665 Male, age 74, both hemispheres 58.0
1941 Male, age 53, unknown 57.8
1916 Female, age 42, unknown 57.4
2590 Female, age 75, unknown 57.1
1851 Male, age 51, unknown 51.7
2409 Female, age 72, unknown 51.4
2583 Male, age 75, right hemisphere 51.4
Superior colliculus
nTPM: 53.3
1895 Male, age 76, right hemisphere 66.6
2261 Male, age 18, unknown 56.4
1913 Female, age 42, unknown 55.4
1839 Male, age 51, unknown 55.2
1796 Male, age 53, unknown 52.8
2664 Male, age 75, both hemispheres 51.7
2087 Female, age 72, unknown 50.8
2587 Male, age 74, left hemisphere 50.0
2668 Female, age 75, unknown 48.6
1995 Male, age 72, unknown 46.0
Ventral tegmental area
nTPM: 51.3
2218 Male, age 76, both hemispheres 60.5
1942 Male, age 51, unknown 54.0
2223 Female, age 72, unknown 49.8
2410 Female, age 72, unknown 48.3
1915 Female, age 42, unknown 48.1
2021 Male, age 53, unknown 47.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 8.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.1
Samples: 139

Max nTPM: 14.2
Min nTPM: 4.1
Std nTPM: 1.8
Median nTPM: 7.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 14.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 12.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 12.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 12.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 12.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 12.1
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 11.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 11.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 11.1
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 11.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 11.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 24.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.9
FF:10158-103A5 76 years, female 24.9

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