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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TUBA1C is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
86.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
940.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
843.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
441.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
349.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
336.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
327.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
323.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
288.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
281.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
255.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
240.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
233.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
232.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
227.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
221.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
220.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
219.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
212.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
212.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
206.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
198.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
197.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
187.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
187.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
185.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
183.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
182.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
181.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
176.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
173.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
173.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
171.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
170.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
170.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
169.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
167.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
166.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
163.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
156.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
156.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
155.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
154.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
152.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
151.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
144.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
144.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
143.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
141.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
141.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
141.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
140.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
140.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
140.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
139.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
138.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
138.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
138.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
132.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
131.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
131.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
131.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
129.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
128.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
127.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
126.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
124.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
122.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
122.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
121.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
119.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
118.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
118.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
117.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
117.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
116.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
114.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
112.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
112.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
111.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
111.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
108.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
108.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
108.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
108.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
105.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
105.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
104.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
102.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
102.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
102.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
99.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
98.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
97.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
96.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
95.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
95.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
95.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
94.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
94.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
93.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
93.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
92.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
91.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
91.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
91.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
90.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
90.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
89.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
89.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
89.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
88.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
88.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
88.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
87.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
87.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
87.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
86.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
83.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
82.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
82.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
82.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
82.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
82.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
82.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
81.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
81.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
80.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
80.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
80.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
80.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
78.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
78.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
78.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
78.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
78.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
78.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
78.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
77.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
77.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
77.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
77.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
76.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
76.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
76.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
76.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
76.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
75.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
75.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
75.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
75.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
74.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
74.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
74.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
73.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
72.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
72.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
72.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
72.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
72.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
70.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
70.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
70.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
69.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
69.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
69.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
69.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
68.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
68.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
68.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
68.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
67.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
67.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
67.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
66.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
65.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
65.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
65.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
64.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
63.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
63.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
63.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
62.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
62.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
62.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
61.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
61.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
61.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
61.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
60.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
60.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
60.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
60.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
60.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
60.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
60.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
59.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
59.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
59.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
59.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
58.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
58.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
58.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
58.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
57.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
57.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
57.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
57.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
57.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
57.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
57.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
56.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
56.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
56.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
56.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
55.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
55.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
55.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
55.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
54.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
54.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
54.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
54.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
54.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
54.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
54.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
53.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
53.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
53.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
53.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
52.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
52.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
52.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
52.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
52.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
51.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
51.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
51.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
50.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
50.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
50.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
49.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
49.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
49.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
49.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
49.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
48.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
48.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
48.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
47.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
47.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
47.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
47.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
46.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
46.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
46.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
46.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
46.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
46.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
46.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
45.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
45.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
45.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
44.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
44.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
44.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
44.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
44.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
43.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
43.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
43.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
42.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
42.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
42.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
42.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
42.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
42.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
41.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
41.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
41.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
41.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
41.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
41.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
40.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
40.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
39.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
39.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
39.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
39.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
39.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
39.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
38.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
38.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
38.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
38.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
37.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
37.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
37.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
36.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
36.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
35.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
35.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
35.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
35.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
34.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
34.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
34.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
34.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
34.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
33.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
33.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
33.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
33.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
33.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
32.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
32.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
32.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
32.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
32.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
31.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
31.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
31.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
30.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
30.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
29.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
29.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
29.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
28.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
28.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
28.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
27.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
27.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
27.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
27.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
27.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
27.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
26.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
26.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
26.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
26.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
25.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
25.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
25.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
24.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
24.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
23.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
23.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
22.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
22.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
21.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
20.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
20.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
20.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
18.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
18.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
17.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
17.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TUBA1C is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
50.4
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
277.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
255.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
254.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
252.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
228.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
217.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
207.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
164.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
159.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
130.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
129.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
125.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
115.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
114.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
112.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
109.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
108.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
103.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
97.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
95.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
88.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
86.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
86.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
86.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
85.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
85.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
85.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
82.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
82.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
81.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
81.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
80.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
80.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
78.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
78.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
76.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
76.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
76.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
74.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
73.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
72.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
71.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
71.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
71.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
71.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
71.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
70.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
70.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
68.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
68.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
68.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
67.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
66.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
66.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
66.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
65.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
65.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
64.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
64.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
63.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
61.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
61.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
59.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
58.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
57.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
56.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
55.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
54.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
53.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
52.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
52.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
50.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
50.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
49.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
49.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
49.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
48.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
48.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
48.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
47.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
47.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
47.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
47.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
46.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
46.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
45.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
45.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
44.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
44.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
43.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
43.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
43.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
43.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
43.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
42.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
42.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
42.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
40.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
40.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
40.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
40.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
40.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
39.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
39.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
39.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
38.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
38.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
38.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
38.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
38.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
38.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
38.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
38.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
38.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
37.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
37.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
37.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
37.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
36.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
36.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
36.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
36.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
35.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
35.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
35.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
35.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
35.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
35.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
35.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
34.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
33.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
33.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
33.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
32.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
32.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
32.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
32.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
32.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
32.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
32.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
32.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
31.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
31.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
31.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
30.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
30.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
30.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
30.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
29.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
29.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
29.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
29.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
28.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
28.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
28.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
28.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
28.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
27.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
27.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
27.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
27.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
27.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
27.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
27.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
26.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
26.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
26.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
26.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
25.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
25.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
25.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
25.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
25.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
25.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
25.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
24.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
24.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
24.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
24.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
23.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
23.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
23.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
23.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
23.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
23.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
22.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
22.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
22.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
21.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
21.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
21.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
21.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
20.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
20.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
20.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
18.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
18.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
18.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
17.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
17.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
17.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
463
Tumor
0.5
125
Tumor
0.5
351
Tumor
0.5
663
Tumor
0.4
567
Tumor
0.4
313
Tumor
0.3
171
Tumor
0.3
671
Tumor
0.3
283
Tumor
0.3
277
Tumor
0.3
427
Tumor
0.3
161
Tumor
0.3
743
Tumor
0.3
365
Tumor
0.3
375
Tumor
0.3
661
Tumor
0.3
385
Tumor
0.3
135
Tumor
0.3
627
Tumor
0.3
123
Tumor
0.2
257
Tumor
0.2
147
Tumor
0.2
911
Tumor
0.2
231
Tumor
0.2
367
Tumor
0.2
813
Tumor
0.2
983
Tumor
0.2
195
Tumor
0.2
413
Tumor
0.2
491
Tumor
0.2
455
Tumor
0.1
363
Tumor
0.1
451
Tumor
0.1
217
Tumor
0.1
745
Tumor
0.1
881
Tumor
0.1
297
Tumor
0.1
343
Tumor
0.1
423
Tumor
0.1
777
Tumor
0.1
395
Tumor
0.1
271
Tumor
0.1
223
Tumor
0.1
943
Tumor
0.1
272
Normal
0.1
497
Tumor
0.1
615
Tumor
0.1
925
Tumor
0.1
267
Tumor
0.1
815
Tumor
0.1
515
Tumor
0.1
387
Tumor
0.1
185
Tumor
0.1
331
Tumor
0.1
311
Tumor
0.1
814
Normal
0.1
141
Tumor
0.1
137
Tumor
0.1
393
Tumor
0.1
421
Tumor
0.1
737
Tumor
0.1
411
Tumor
0.1
741
Tumor
0.1
414
Normal
0.1
877
Tumor
0.1
386
Normal
0.1
436
Normal
0.1
435
Tumor
0.1
192
Normal
0.1
917
Tumor
0.1
537
Tumor
0.1
391
Tumor
0.1
913
Tumor
0.1
444
Normal
0.0
467
Tumor
0.0
353
Tumor
0.0
1013
Tumor
0.0
222
Normal
0.0
136
Normal
0.0
434
Normal
0.0
285
Tumor
0.0
513
Tumor
0.0
278
Normal
0.0
424
Normal
0.0
341
Tumor
0.0
357
Tumor
0.0
268
Normal
0.0
262
Normal
0.0
573
Tumor
0.0
817
Tumor
0.0
443
Tumor
0.0
665
Tumor
0.0
188
Normal
0.0
648
Normal
0.0
138
Normal
0.0
724
Normal
0.0
445
Tumor
0.0
571
Tumor
0.0
1015
Tumor
0.0
362
Normal
0.0
868
Normal
0.0
221
Tumor
0.0
563
Tumor
0.0
967
Tumor
0.0
213
Tumor
0.0
227
Tumor
0.0
132
Normal
0.0
963
Tumor
0.0
172
Normal
0.0
425
Tumor
0.0
112
Tumor
0.0
965
Tumor
0.0
641
Tumor
0.0
937
Tumor
0.0
394
Normal
0.0
388
Normal
0.0
428
Normal
0.0
113
Tumor
0.0
738
Normal
0.0
111
Normal
0.0
464
Normal
0.0
535
Tumor
0.0
124
Normal
0.0
447
Tumor
0.0
126
Normal
0.0
916
Normal
0.0
863
Tumor
0.0
662
Normal
0.0
664
Normal
0.0
191
Tumor
0.0
977
Tumor
0.0
211
Tumor
0.0
422
Normal
0.0
452
Normal
0.0
312
Normal
0.0
465
Tumor
0.0
545
Tumor
-0.1
187
Tumor
-0.1
127
Tumor
-0.1
396
Normal
-0.1
525
Tumor
-0.1
114
Normal
-0.1
666
Normal
-0.1
212
Normal
-0.1
366
Normal
-0.1
456
Normal
-0.1
432
Normal
-0.1
617
Tumor
-0.1
914
Normal
-0.1
461
Tumor
-0.1
258
Normal
-0.1
196
Normal
-0.1
286
Normal
-0.1
523
Tumor
-0.1
468
Normal
-0.1
344
Normal
-0.1
462
Normal
-0.1
921
Tumor
-0.1
426
Normal
-0.1
145
Tumor
-0.1
327
Tumor
-0.1
873
Tumor
-0.1
635
Tumor
-0.1
786
Normal
-0.1
314
Normal
-0.1
923
Tumor
-0.1
383
Tumor
-0.1
148
Normal
-0.1
713
Tumor
-0.1
376
Normal
-0.1
128
Normal
-0.1
368
Normal
-0.1
416
Normal
-0.1
162
Normal
-0.1
431
Tumor
-0.1
358
Normal
-0.1
697
Tumor
-0.1
746
Normal
-0.1
146
Normal
-0.1
518
Normal
-0.1
218
Normal
-0.1
392
Normal
-0.1
966
Normal
-0.1
474
Normal
-0.1
874
Normal
-0.1
695
Tumor
-0.1
647
Tumor
-0.1
727
Tumor
-0.1
955
Tumor
-0.1
298
Normal
-0.1
482
Normal
-0.1
865
Tumor
-0.1
742
Normal
-0.1
224
Normal
-0.1
342
Normal
-0.1
284
Normal
-0.1
851
Tumor
-0.1
186
Normal
-0.1
883
Tumor
-0.1
472
Normal
-0.1
214
Normal
-0.1
785
Tumor
-0.1
131
Tumor
-0.1
492
Normal
-0.1
574
Normal
-0.1
527
Tumor
-0.1
975
Tumor
-0.1
952
Normal
-0.1
361
Tumor
-0.1
433
Tumor
-0.1
723
Tumor
-0.1
228
Normal
-0.1
861
Tumor
-0.1
618
Normal
-0.1
557
Tumor
-0.1
356
Normal
-0.1
332
Normal
-0.1
744
Normal
-0.1
446
Normal
-0.1
528
Normal
-0.2
823
Tumor
-0.2
1021
Tumor
-0.2
466
Normal
-0.2
858
Normal
-0.2
816
Normal
-0.2
824
Normal
-0.2
364
Normal
-0.2
878
Normal
-0.2
755
Tumor
-0.2
976
Normal
-0.2
714
Normal
-0.2
642
Normal
-0.2
968
Normal
-0.2
884
Normal
-0.2
882
Normal
-0.2
352
Normal
-0.2
493
Tumor
-0.2
384
Normal
-0.2
857
Tumor
-0.2
938
Normal
-0.2
867
Tumor
-0.2
538
Normal
-0.2
628
Normal
-0.2
534
Normal
-0.2
355
Tumor
-0.2
728
Normal
-0.2
536
Normal
-0.2
483
Tumor
-0.2
1016
Normal
-0.2
558
Normal
-0.2
328
Normal
-0.2
616
Normal
-0.2
568
Normal
-0.2
232
Normal
-0.2
412
Normal
-0.2
778
Normal
-0.2
672
Normal
-0.2
526
Normal
-0.2
721
Tumor
-0.2
1027
Tumor
-0.2
564
Normal
-0.2
978
Normal
-0.2
1028
Normal
-0.2
533
Tumor
-0.2
953
Tumor
-0.2
481
Tumor
-0.2
951
Tumor
-0.2
722
Normal
-0.2
864
Normal
-0.2
487
Tumor
-0.2
354
Normal
-0.2
488
Normal
-0.2
498
Normal
-0.2
477
Tumor
-0.2
261
Tumor
-0.2
964
Normal
-0.2
866
Normal
-0.2
142
Normal
-0.2
918
Normal
-0.2
957
Tumor
-0.3
686
Normal
-0.3
926
Normal
-0.3
494
Normal
-0.3
516
Normal
-0.3
924
Normal
-0.3
915
Tumor
-0.3
912
Normal
-0.3
982
Normal
-0.3
546
Normal
-0.3
756
Normal
-0.3
1026
Normal
-0.3
484
Normal
-0.3
471
Tumor
-0.3
478
Normal
-0.3
1043
Tumor
-0.3
1041
Tumor
-0.3
716
Normal
-0.3
415
Tumor
-0.3
956
Normal
-0.3
862
Normal
-0.3
944
Normal
-0.3
958
Normal
-0.3
685
Tumor
-0.3
984
Normal
-0.3
636
Normal
-0.3
922
Normal
-0.3
981
Tumor
-0.3
852
Normal
-0.3
514
Normal
-0.3
448
Normal
-0.3
1014
Normal
-0.3
572
Normal
-0.3
696
Normal
-0.3
954
Normal
-0.3
524
Normal
-0.3
1025
Tumor
-0.3
715
Tumor
-0.3
698
Normal
-0.3
818
Normal
-0.4
1032
Normal
-0.4
1022
Normal
-0.4
1044
Normal
-0.4
517
Tumor
-0.4
554
Normal
-0.4
1031
Tumor
-0.4
1042
Normal
-0.4
1045
Tumor
-0.4
1046
Normal
-0.5
553
Tumor
-0.6
473
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.