MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1191.7 nTPM
HPA Brain:968.3 nTPM
GTEx:1191.7 nTPM
FANTOM5:2100.0 Scaled Tags Per Million
Pig:1418.8 nTPM
Mouse:1570.1 nTPM
Allen mouse:34.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 968.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 757.0
2411 Female, age 72, unknown 1142.0
1870 Female, age 42, unknown 984.1
1830 Male, age 51, unknown 803.7
1833 Male, age 53, unknown 766.4
2019 Male, age 18, unknown 743.1
2219 Male, age 76, both hemispheres 736.7
2828 Female, age 72, unknown 675.6
1827 Male, age 72, unknown 667.2
2586 Male, age 75, left hemisphere 584.5
2666 Male, age 74, left hemisphere 466.3
Dorsal raphe nucleus
nTPM: 855.1
2750 Male, age 76, both hemispheres 1189.9
2298 Female, age 72, unknown 959.6
2047 Male, age 72, unknown 757.5
1828 Male, age 53, unknown 708.2
2016 Female, age 72, unknown 660.2
Inferior colliculus
nTPM: 522.6
2097 Female, age 72, unknown 597.6
1848 Female, age 42, unknown 514.5
1890 Male, age 53, unknown 495.7
2849 Male, age 72, unknown 482.4
Median raphe nucleus
nTPM: 909.7
2220 Male, age 76, midline 909.7
Periaquaductal grey, anterior
nTPM: 699.9
1795 Male, age 51, unknown 704.7
2502 Female, age 75, unknown 704.2
1947 Male, age 18, unknown 690.9
Periaquaductal grey, dorsal
nTPM: 582.7
2850 Male, age 76, both hemispheres 721.7
2464 Female, age 72, unknown 582.4
1831 Male, age 72, unknown 545.3
1840 Male, age 53, unknown 481.5
Periaquaductal grey, lateral
nTPM: 693.3
2272 Male, age 74, both hemispheres 791.7
2053 Male, age 18, unknown 650.9
2140 Male, age 76, both hemispheres 637.4
Pretectal area
nTPM: 675.6
2273 Male, age 74, both hemispheres 942.1
2224 Female, age 72, unknown 748.7
2825 Male, age 18, unknown 714.5
1815 Male, age 53, unknown 714.4
2407 Male, age 75, both hemispheres 692.9
2667 Female, age 75, unknown 677.7
2316 Male, age 76, right hemisphere 668.0
2007 Male, age 72, unknown 645.7
1817 Female, age 42, unknown 598.0
1816 Male, age 51, unknown 527.4
1944 Female, age 72, unknown 502.8
Red nucleus
nTPM: 806.6
1821 Female, age 72, unknown 1052.2
1865 Male, age 51, unknown 961.4
1904 Male, age 53, unknown 946.3
2227 Male, age 72, unknown 868.5
2769 Male, age 72, unknown 841.9
1954 Female, age 42, unknown 829.8
2785 Male, age 18, unknown 784.9
2823 Male, age 76, right hemisphere 772.0
2503 Female, age 72, unknown 755.7
2588 Male, age 74, left hemisphere 648.5
2725 Female, age 75, unknown 633.4
2584 Male, age 75, left hemisphere 584.2
Substantia nigra
nTPM: 809.7
1916 Female, age 42, unknown 1180.9
1851 Male, age 51, unknown 1030.4
1941 Male, age 53, unknown 896.2
2241 Male, age 72, unknown 890.5
2699 Male, age 18, unknown 842.4
2590 Female, age 75, unknown 813.1
2409 Female, age 72, unknown 775.5
1889 Female, age 72, unknown 698.2
2583 Male, age 75, right hemisphere 584.5
2665 Male, age 74, both hemispheres 385.3
Superior colliculus
nTPM: 686.4
1913 Female, age 42, unknown 942.7
2587 Male, age 74, left hemisphere 854.7
2668 Female, age 75, unknown 791.7
1995 Male, age 72, unknown 728.7
1796 Male, age 53, unknown 661.8
2261 Male, age 18, unknown 625.7
1839 Male, age 51, unknown 603.2
2664 Male, age 75, both hemispheres 581.9
1895 Male, age 76, right hemisphere 569.1
2087 Female, age 72, unknown 504.0
Ventral tegmental area
nTPM: 968.3
2223 Female, age 72, unknown 1170.5
2410 Female, age 72, unknown 1004.2
1915 Female, age 42, unknown 970.2
2021 Male, age 53, unknown 947.8
2218 Male, age 76, both hemispheres 946.3
1942 Male, age 51, unknown 771.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1191.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1191.7
Samples: 183

Max nTPM: 3305.6
Min nTPM: 221.7
Std nTPM: 457.0
Median nTPM: 1138.2
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 3305.6
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 2659.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 2496.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 2325.0
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 2283.1
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 2258.2
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 2078.9
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 2055.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2054.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 2048.0
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 1984.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 2100.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2100.0
FF:10158-103A5 76 years, female 2100.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1418.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1232.1
Samples: 4

Max nTPM: 1614.0
Min nTPM: 803.9
Sample A Female 1432.6
Sample B Female 803.9
Sample C Male 1614.0
Sample D Male 1077.9
Midbrain
nTPM: 1418.8
Samples: 4

Max nTPM: 2565.7
Min nTPM: 699.9
Sample A Female 2565.7
Sample B Female 1118.7
Sample C Male 1291.0
Sample D Male 699.9
Periaqueductal gray
nTPM: 934.7
Samples: 3

Max nTPM: 1183.8
Min nTPM: 750.4
Sample B Female 869.8
Sample C Male 1183.8
Sample D Male 750.4
Superior colliculi
nTPM: 947.5
Samples: 4

Max nTPM: 1352.6
Min nTPM: 593.2
Sample A Female 975.5
Sample B Female 593.2
Sample C Male 1352.6
Sample D Male 868.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1570.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 1570.1
Samples: 4

Max nTPM: 1661.3
Min nTPM: 1432.3
Sample A Male 1661.3
Sample B Male 1527.3
Sample C Female 1432.3
Sample D Female 1659.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 34.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 34.0
68844164 Antisense, RP_050222_01_A07, Mouse strain C57BL/6J (56 days, male) 34.0

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo