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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MVD is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
331.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
178.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
177.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
165.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
156.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
155.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
152.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
128.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
120.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
110.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
109.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
108.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
108.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
104.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
101.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
101.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
98.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
98.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
96.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
94.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
90.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
84.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
83.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
82.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
80.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
78.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
77.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
77.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
76.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
75.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
75.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
74.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
74.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
73.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
73.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
72.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
71.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
71.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
71.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
71.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
70.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
70.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
67.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
65.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
64.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
64.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
64.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
62.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
59.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
59.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
59.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
58.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
58.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
58.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
57.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
56.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
56.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
55.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
55.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
54.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
54.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
54.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
53.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
53.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
52.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
52.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
52.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
51.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
51.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
50.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
50.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
50.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
50.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
50.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
49.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
48.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
48.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
48.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
48.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
47.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
47.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
46.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
46.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
46.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
46.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
46.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
45.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
45.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
45.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
45.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
45.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
44.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
44.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
44.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
44.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
44.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
43.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
43.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
43.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
43.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
43.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
43.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
42.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
42.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
41.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
41.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
41.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
41.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
41.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
41.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
41.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
41.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
41.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
41.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
40.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
40.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
39.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
39.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
39.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
39.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
39.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
39.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
38.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
38.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
38.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
38.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
37.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
37.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
37.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
37.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
37.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
37.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
37.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
36.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
36.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
36.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
36.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
36.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
36.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
36.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
35.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
34.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
34.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
33.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
33.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
33.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
33.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
33.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
33.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
33.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
33.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
33.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
32.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
32.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
32.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
32.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
32.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
32.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
32.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
32.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
31.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
30.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
30.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
30.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
30.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
30.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
29.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
29.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
29.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
29.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
29.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
29.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
29.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
29.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
28.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
28.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
28.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
28.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
28.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
28.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
28.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
28.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
27.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
27.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
27.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
27.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
27.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
27.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
27.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
27.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
27.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
27.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
27.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
27.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
27.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
27.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
27.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
26.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
26.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
26.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
26.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
26.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
26.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
26.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
26.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
25.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
25.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
25.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
25.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
25.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
24.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
24.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
24.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
24.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
24.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
24.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
24.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
24.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
24.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
24.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
24.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
24.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
24.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
23.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
23.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
23.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
23.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
23.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
23.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
23.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
22.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
22.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
22.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
22.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
22.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
22.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
21.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
21.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
21.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
21.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
21.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
21.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
21.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
21.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
21.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
21.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
20.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
20.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
20.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
20.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
20.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
20.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
19.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
19.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
19.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
19.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
18.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
18.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
18.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
18.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
18.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
18.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
17.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
17.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
17.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
16.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
16.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
16.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
16.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
15.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
15.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MVD is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.8
Number of samples
231
Samples
Sample
Description
TPM
DO45161
0 years, male, NA, stage:2, dead, 540 days
159.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
145.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
137.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
88.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
82.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
81.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
80.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
77.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
76.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
73.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
73.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
68.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
66.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
66.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
59.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
58.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
57.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
57.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
56.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
56.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
53.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
53.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
53.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
53.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
53.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
52.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
52.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
51.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
51.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
50.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
49.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
49.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
48.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
48.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
46.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
46.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
46.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
45.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
45.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
44.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
44.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
42.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
42.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
42.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
42.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
41.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
40.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
38.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
38.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
37.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
36.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
36.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
35.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
35.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
35.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
35.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
35.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
35.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
33.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
33.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
32.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
31.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
31.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
31.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
31.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
30.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
29.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
29.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
29.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
29.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
28.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
28.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
28.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
28.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
28.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
27.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
27.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
27.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
27.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
27.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
27.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
27.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
27.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
27.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
26.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
26.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
26.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
25.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
25.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
25.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
25.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
25.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
24.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
24.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
24.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
24.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
23.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
23.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
23.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
23.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
22.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
22.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
22.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
21.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
20.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
20.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
20.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
20.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
19.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
18.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
17.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
16.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
15.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
14.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
10.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
267
Tumor
2.1
361
Tumor
1.3
141
Tumor
1.2
327
Tumor
1.1
746
Normal
1.1
462
Normal
1.1
363
Tumor
1.0
366
Normal
0.9
882
Normal
0.8
413
Tumor
0.8
648
Normal
0.8
518
Normal
0.7
222
Normal
0.7
436
Normal
0.7
1026
Normal
0.7
445
Tumor
0.7
391
Tumor
0.7
432
Normal
0.7
452
Normal
0.7
635
Tumor
0.6
135
Tumor
0.6
728
Normal
0.6
414
Normal
0.6
172
Normal
0.6
967
Tumor
0.6
358
Normal
0.6
742
Normal
0.6
923
Tumor
0.6
951
Tumor
0.6
262
Normal
0.6
342
Normal
0.5
272
Normal
0.5
132
Normal
0.5
298
Normal
0.5
394
Normal
0.5
258
Normal
0.5
924
Normal
0.5
863
Tumor
0.5
186
Normal
0.5
966
Normal
0.5
162
Normal
0.5
852
Normal
0.5
716
Normal
0.5
472
Normal
0.5
714
Normal
0.5
756
Normal
0.5
424
Normal
0.4
435
Tumor
0.4
422
Normal
0.4
387
Tumor
0.4
564
Normal
0.4
314
Normal
0.4
824
Normal
0.4
982
Normal
0.4
738
Normal
0.4
755
Tumor
0.4
616
Normal
0.4
723
Tumor
0.4
218
Normal
0.4
517
Tumor
0.4
232
Normal
0.4
1032
Normal
0.4
874
Normal
0.4
228
Normal
0.4
1022
Normal
0.3
357
Tumor
0.3
617
Tumor
0.3
864
Normal
0.3
938
Normal
0.3
416
Normal
0.3
884
Normal
0.3
463
Tumor
0.3
858
Normal
0.3
664
Normal
0.3
328
Normal
0.3
722
Normal
0.3
816
Normal
0.3
818
Normal
0.3
482
Normal
0.3
356
Normal
0.3
224
Normal
0.3
214
Normal
0.3
1025
Tumor
0.3
642
Normal
0.3
113
Tumor
0.3
618
Normal
0.3
412
Normal
0.3
964
Normal
0.3
868
Normal
0.3
494
Normal
0.2
815
Tumor
0.2
142
Normal
0.2
627
Tumor
0.2
114
Normal
0.2
312
Normal
0.2
926
Normal
0.2
456
Normal
0.2
554
Normal
0.2
866
Normal
0.2
1016
Normal
0.2
862
Normal
0.2
466
Normal
0.2
666
Normal
0.2
1046
Normal
0.2
474
Normal
0.2
777
Tumor
0.2
487
Tumor
0.2
448
Normal
0.2
958
Normal
0.2
196
Normal
0.2
568
Normal
0.2
686
Normal
0.2
1044
Normal
0.2
778
Normal
0.2
912
Normal
0.2
434
Normal
0.2
136
Normal
0.2
968
Normal
0.2
217
Tumor
0.2
877
Tumor
0.1
878
Normal
0.1
286
Normal
0.1
332
Normal
0.1
526
Normal
0.1
138
Normal
0.1
956
Normal
0.1
223
Tumor
0.1
376
Normal
0.1
112
Tumor
0.1
488
Normal
0.1
464
Normal
0.1
212
Normal
0.1
1028
Normal
0.1
662
Normal
0.1
111
Normal
0.1
558
Normal
0.1
922
Normal
0.1
477
Tumor
0.1
386
Normal
0.1
428
Normal
0.1
698
Normal
0.1
744
Normal
0.1
628
Normal
0.1
392
Normal
0.1
362
Normal
0.1
468
Normal
0.1
1027
Tumor
0.1
271
Tumor
0.1
484
Normal
0.1
1042
Normal
0.1
278
Normal
0.1
148
Normal
0.1
647
Tumor
0.0
1014
Normal
0.0
146
Normal
0.0
426
Normal
0.0
192
Normal
0.0
696
Normal
0.0
567
Tumor
0.0
534
Normal
0.0
914
Normal
0.0
976
Normal
0.0
743
Tumor
0.0
1043
Tumor
0.0
851
Tumor
0.0
724
Normal
0.0
433
Tumor
0.0
285
Tumor
0.0
786
Normal
0.0
954
Normal
0.0
1021
Tumor
0.0
918
Normal
0.0
727
Tumor
0.0
465
Tumor
0.0
284
Normal
-0.1
126
Normal
-0.1
978
Normal
-0.1
865
Tumor
-0.1
574
Normal
-0.1
952
Normal
-0.1
188
Normal
-0.1
528
Normal
-0.1
955
Tumor
-0.1
983
Tumor
-0.1
481
Tumor
-0.1
492
Normal
-0.1
817
Tumor
-0.1
227
Tumor
-0.1
867
Tumor
-0.1
354
Normal
-0.1
396
Normal
-0.1
415
Tumor
-0.1
161
Tumor
-0.1
514
Normal
-0.1
537
Tumor
-0.1
423
Tumor
-0.2
571
Tumor
-0.2
572
Normal
-0.2
478
Normal
-0.2
353
Tumor
-0.2
388
Normal
-0.2
171
Tumor
-0.2
944
Normal
-0.2
857
Tumor
-0.2
516
Normal
-0.2
557
Tumor
-0.2
187
Tumor
-0.2
365
Tumor
-0.2
268
Normal
-0.2
364
Normal
-0.2
446
Normal
-0.2
883
Tumor
-0.3
538
Normal
-0.3
145
Tumor
-0.3
128
Normal
-0.3
384
Normal
-0.3
1015
Tumor
-0.3
671
Tumor
-0.3
461
Tumor
-0.3
615
Tumor
-0.3
341
Tumor
-0.3
368
Normal
-0.3
546
Normal
-0.3
191
Tumor
-0.3
1031
Tumor
-0.3
535
Tumor
-0.3
921
Tumor
-0.3
483
Tumor
-0.3
525
Tumor
-0.3
975
Tumor
-0.3
331
Tumor
-0.4
963
Tumor
-0.4
695
Tumor
-0.4
131
Tumor
-0.4
1045
Tumor
-0.4
497
Tumor
-0.4
493
Tumor
-0.4
636
Normal
-0.4
451
Tumor
-0.4
713
Tumor
-0.4
715
Tumor
-0.4
861
Tumor
-0.4
916
Normal
-0.4
231
Tumor
-0.4
641
Tumor
-0.4
277
Tumor
-0.4
515
Tumor
-0.5
1041
Tumor
-0.5
443
Tumor
-0.5
965
Tumor
-0.5
785
Tumor
-0.5
257
Tumor
-0.5
344
Normal
-0.5
563
Tumor
-0.5
421
Tumor
-0.5
123
Tumor
-0.5
523
Tumor
-0.5
352
Normal
-0.6
221
Tumor
-0.6
444
Normal
-0.6
455
Tumor
-0.6
984
Normal
-0.6
745
Tumor
-0.6
124
Normal
-0.6
814
Normal
-0.6
355
Tumor
-0.6
573
Tumor
-0.6
471
Tumor
-0.6
881
Tumor
-0.6
498
Normal
-0.6
911
Tumor
-0.6
411
Tumor
-0.6
185
Tumor
-0.6
127
Tumor
-0.6
663
Tumor
-0.6
447
Tumor
-0.6
977
Tumor
-0.6
261
Tumor
-0.6
513
Tumor
-0.6
385
Tumor
-0.7
685
Tumor
-0.7
913
Tumor
-0.7
873
Tumor
-0.7
953
Tumor
-0.7
813
Tumor
-0.7
147
Tumor
-0.7
981
Tumor
-0.7
661
Tumor
-0.7
672
Normal
-0.7
473
Tumor
-0.7
721
Tumor
-0.7
311
Tumor
-0.7
467
Tumor
-0.7
425
Tumor
-0.7
823
Tumor
-0.7
313
Tumor
-0.7
137
Tumor
-0.7
1013
Tumor
-0.7
957
Tumor
-0.7
297
Tumor
-0.8
553
Tumor
-0.8
536
Normal
-0.8
195
Tumor
-0.8
395
Tumor
-0.8
917
Tumor
-0.8
367
Tumor
-0.9
737
Tumor
-0.9
665
Tumor
-0.9
283
Tumor
-0.9
431
Tumor
-0.9
741
Tumor
-0.9
491
Tumor
-0.9
375
Tumor
-0.9
125
Tumor
-1.0
527
Tumor
-1.0
211
Tumor
-1.0
383
Tumor
-1.0
393
Tumor
-1.0
213
Tumor
-1.0
937
Tumor
-1.0
925
Tumor
-1.1
524
Normal
-1.1
545
Tumor
-1.2
697
Tumor
-1.2
943
Tumor
-1.2
343
Tumor
-1.2
351
Tumor
-1.2
427
Tumor
-1.3
533
Tumor
-1.4
915
Tumor
-1.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
