MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.7 nTPM
HPA Brain:61.8 nTPM
GTEx:20.7 nTPM
FANTOM5:47.2 Scaled Tags Per Million
Pig:46.6 nTPM
Mouse:9.4 nTPM
Allen mouse:3.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 61.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.7
2586 Male, age 75, left hemisphere 113.3
2666 Male, age 74, left hemisphere 67.7
2828 Female, age 72, unknown 62.2
1833 Male, age 53, unknown 60.4
2019 Male, age 18, unknown 53.2
1830 Male, age 51, unknown 52.4
1827 Male, age 72, unknown 47.4
1870 Female, age 42, unknown 47.4
2411 Female, age 72, unknown 43.4
2219 Male, age 76, both hemispheres 39.4
Dorsal raphe nucleus
nTPM: 54.5
1828 Male, age 53, unknown 57.6
2298 Female, age 72, unknown 57.1
2047 Male, age 72, unknown 55.4
2750 Male, age 76, both hemispheres 51.5
2016 Female, age 72, unknown 50.9
Inferior colliculus
nTPM: 50.9
2849 Male, age 72, unknown 59.8
1848 Female, age 42, unknown 50.9
1890 Male, age 53, unknown 49.6
2097 Female, age 72, unknown 43.3
Median raphe nucleus
nTPM: 55.9
2220 Male, age 76, midline 55.9
Periaquaductal grey, anterior
nTPM: 61.8
2502 Female, age 75, unknown 64.8
1795 Male, age 51, unknown 62.9
1947 Male, age 18, unknown 57.6
Periaquaductal grey, dorsal
nTPM: 58.0
2850 Male, age 76, both hemispheres 85.0
1831 Male, age 72, unknown 56.9
2464 Female, age 72, unknown 46.5
1840 Male, age 53, unknown 43.5
Periaquaductal grey, lateral
nTPM: 58.3
2140 Male, age 76, both hemispheres 72.8
2272 Male, age 74, both hemispheres 56.7
2053 Male, age 18, unknown 45.4
Pretectal area
nTPM: 53.7
2407 Male, age 75, both hemispheres 61.5
1817 Female, age 42, unknown 61.2
2667 Female, age 75, unknown 61.1
2316 Male, age 76, right hemisphere 57.9
2007 Male, age 72, unknown 57.2
1815 Male, age 53, unknown 54.7
2825 Male, age 18, unknown 52.0
1816 Male, age 51, unknown 50.2
2273 Male, age 74, both hemispheres 45.7
2224 Female, age 72, unknown 44.5
1944 Female, age 72, unknown 44.1
Red nucleus
nTPM: 57.8
2584 Male, age 75, left hemisphere 68.3
1904 Male, age 53, unknown 64.8
2785 Male, age 18, unknown 61.4
2823 Male, age 76, right hemisphere 60.2
2769 Male, age 72, unknown 59.1
1954 Female, age 42, unknown 58.4
2227 Male, age 72, unknown 56.9
2588 Male, age 74, left hemisphere 56.8
2725 Female, age 75, unknown 54.9
1865 Male, age 51, unknown 53.9
1821 Female, age 72, unknown 52.6
2503 Female, age 72, unknown 45.9
Substantia nigra
nTPM: 54.5
2699 Male, age 18, unknown 70.1
1916 Female, age 42, unknown 68.0
2665 Male, age 74, both hemispheres 65.6
1851 Male, age 51, unknown 60.2
2583 Male, age 75, right hemisphere 57.9
1889 Female, age 72, unknown 50.1
1941 Male, age 53, unknown 45.7
2590 Female, age 75, unknown 45.6
2241 Male, age 72, unknown 43.1
2409 Female, age 72, unknown 38.8
Superior colliculus
nTPM: 53.1
2664 Male, age 75, both hemispheres 65.1
1796 Male, age 53, unknown 61.2
1995 Male, age 72, unknown 57.8
2261 Male, age 18, unknown 54.8
2668 Female, age 75, unknown 53.7
1839 Male, age 51, unknown 53.1
2087 Female, age 72, unknown 47.2
1895 Male, age 76, right hemisphere 46.4
2587 Male, age 74, left hemisphere 45.8
1913 Female, age 42, unknown 45.4
Ventral tegmental area
nTPM: 50.2
1915 Female, age 42, unknown 53.3
2218 Male, age 76, both hemispheres 52.7
1942 Male, age 51, unknown 52.5
2021 Male, age 53, unknown 50.1
2410 Female, age 72, unknown 46.5
2223 Female, age 72, unknown 46.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 20.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.7
Samples: 139

Max nTPM: 60.4
Min nTPM: 6.3
Std nTPM: 9.7
Median nTPM: 17.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 60.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 54.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 50.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 46.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 45.0
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 42.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 40.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 37.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 37.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 37.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 36.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 47.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.2
FF:10158-103A5 76 years, female 47.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 46.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 44.6
Samples: 4

Max nTPM: 47.5
Min nTPM: 41.7
Sample A Female 45.5
Sample B Female 43.8
Sample C Male 47.5
Sample D Male 41.7
Midbrain
nTPM: 41.8
Samples: 4

Max nTPM: 43.8
Min nTPM: 40.9
Sample A Female 43.8
Sample B Female 41.6
Sample C Male 41.0
Sample D Male 40.9
Periaqueductal gray
nTPM: 38.6
Samples: 3

Max nTPM: 42.4
Min nTPM: 34.2
Sample B Female 39.3
Sample C Male 42.4
Sample D Male 34.2
Superior colliculi
nTPM: 46.6
Samples: 4

Max nTPM: 56.1
Min nTPM: 41.8
Sample A Female 56.1
Sample B Female 43.4
Sample C Male 41.8
Sample D Male 45.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 9.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.4
Samples: 4

Max nTPM: 10.6
Min nTPM: 8.5
Sample A Male 10.6
Sample B Male 9.6
Sample C Female 9.0
Sample D Female 8.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
71670739 Antisense, RP_050614_04_E10, Mouse strain C57BL/6J (56 days, male) 3.1
70473921 Antisense, RP_050614_04_E10, Mouse strain C57BL/6J (56 days, male) 2.2

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