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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FN3K is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
63.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
313.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
267.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
221.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
213.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
197.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
196.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
194.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
181.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
179.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
177.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
174.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
171.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
166.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
162.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
153.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
152.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
152.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
146.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
146.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
144.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
143.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
142.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
141.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
138.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
137.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
136.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
136.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
132.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
124.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
124.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
123.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
120.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
119.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
119.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
118.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
116.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
115.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
114.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
114.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
112.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
110.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
108.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
108.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
108.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
107.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
106.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
106.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
103.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
103.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
102.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
100.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
99.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
97.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
95.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
94.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
94.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
94.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
94.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
93.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
91.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
91.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
91.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
91.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
89.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
88.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
87.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
87.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
87.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
86.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
86.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
85.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
85.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
85.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
84.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
84.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
84.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
83.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
83.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
83.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
83.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
82.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
82.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
81.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
81.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
81.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
81.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
80.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
78.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
78.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
78.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
77.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
77.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
77.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
76.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
76.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
76.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
76.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
75.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
75.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
75.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
75.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
74.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
74.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
73.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
73.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
73.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
72.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
72.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
72.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
72.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
72.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
72.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
71.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
71.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
70.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
70.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
68.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
68.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
67.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
67.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
66.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
66.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
66.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
66.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
66.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
66.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
66.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
66.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
66.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
65.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
65.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
65.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
64.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
64.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
64.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
64.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
63.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
63.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
63.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
63.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
62.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
62.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
62.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
62.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
62.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
61.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
61.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
61.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
61.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
61.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
60.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
60.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
60.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
60.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
59.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
59.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
59.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
59.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
59.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
59.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
59.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
58.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
58.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
58.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
58.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
58.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
58.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
58.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
57.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
57.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
56.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
56.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
56.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
55.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
55.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
55.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
55.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
54.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
54.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
54.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
53.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
53.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
53.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
52.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
52.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
52.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
52.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
52.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
51.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
51.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
51.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
51.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
50.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
50.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
50.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
50.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
50.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
50.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
50.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
50.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
49.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
49.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
49.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
49.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
49.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
49.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
48.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
48.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
48.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
47.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
47.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
47.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
47.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
47.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
47.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
47.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
46.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
46.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
46.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
46.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
46.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
46.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
45.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
45.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
45.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
45.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
45.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
45.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
45.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
44.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
44.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
44.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
44.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
44.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
43.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
43.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
43.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
43.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
43.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
42.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
42.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
42.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
41.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
41.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
41.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
41.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
41.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
40.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
40.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
39.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
39.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
39.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
39.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
39.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
38.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
38.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
37.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
37.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
37.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
36.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
36.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
36.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
36.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
36.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
35.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
35.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
34.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
34.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
34.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
34.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
34.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
34.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
34.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
34.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
34.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
34.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
34.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
33.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
33.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
33.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
33.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
33.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
32.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
32.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
32.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
32.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
32.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
32.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
31.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
31.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
31.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
30.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
30.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
30.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
30.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
30.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
30.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
30.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
30.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
30.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
29.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
29.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
29.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
28.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
28.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
28.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
27.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
27.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
27.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
26.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
26.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
26.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
25.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
25.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
25.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
25.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
25.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
25.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
24.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
24.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
24.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
24.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
23.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
23.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
23.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
22.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
22.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
21.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
21.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
21.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
20.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
20.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
20.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
20.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
19.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
19.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
18.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
18.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
16.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
16.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
13.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
9.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FN3K is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.3
Number of samples
231
Samples
Sample
Description
TPM
DO45119
0 years, male, NA, stage:3, dead, 510 days
126.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
103.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
96.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
92.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
91.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
88.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
85.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
81.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
78.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
78.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
78.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
75.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
68.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
66.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
65.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
63.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
63.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
62.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
61.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
61.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
61.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
60.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
59.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
57.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
57.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
56.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
55.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
55.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
54.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
53.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
52.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
52.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
52.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
52.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
51.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
51.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
51.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
50.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
50.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
49.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
49.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
48.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
47.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
47.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
47.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
47.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
47.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
47.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
46.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
46.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
46.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
44.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
44.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
44.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
43.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
43.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
43.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
42.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
41.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
41.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
41.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
41.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
41.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
40.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
40.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
39.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
39.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
39.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
39.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
39.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
38.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
38.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
38.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
38.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
38.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
37.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
37.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
37.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
37.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
37.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
36.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
36.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
36.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
36.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
36.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
36.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
35.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
35.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
34.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
34.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
34.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
34.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
34.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
34.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
33.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
33.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
33.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
32.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
32.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
32.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
32.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
32.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
32.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
31.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
31.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
31.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
31.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
31.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
31.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
31.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
30.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
30.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
30.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
30.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
30.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
30.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
29.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
29.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
29.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
29.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
29.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
28.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
28.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
28.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
28.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
28.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
28.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
27.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
27.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
27.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
27.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
27.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
26.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
26.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
26.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
26.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
26.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
26.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
26.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
25.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
25.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
25.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
25.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
25.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
25.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
23.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
23.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
23.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
23.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
23.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
22.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
22.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
22.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
22.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
21.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
21.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
21.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
21.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
21.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
20.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
19.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
19.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
19.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
16.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
16.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
16.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
13.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
1.7
953
Tumor
1.6
533
Tumor
1.5
147
Tumor
1.3
423
Tumor
1.1
357
Tumor
1.0
361
Tumor
0.9
745
Tumor
0.9
957
Tumor
0.9
513
Tumor
0.9
627
Tumor
0.9
277
Tumor
0.8
435
Tumor
0.8
615
Tumor
0.7
355
Tumor
0.7
1013
Tumor
0.7
491
Tumor
0.6
981
Tumor
0.6
411
Tumor
0.6
257
Tumor
0.6
313
Tumor
0.5
525
Tumor
0.5
727
Tumor
0.5
685
Tumor
0.5
867
Tumor
0.5
923
Tumor
0.5
695
Tumor
0.5
1045
Tumor
0.5
912
Normal
0.5
863
Tumor
0.5
746
Normal
0.5
553
Tumor
0.5
523
Tumor
0.5
365
Tumor
0.5
271
Tumor
0.5
714
Normal
0.5
515
Tumor
0.4
484
Normal
0.4
964
Normal
0.4
756
Normal
0.4
882
Normal
0.4
818
Normal
0.4
436
Normal
0.4
698
Normal
0.4
858
Normal
0.4
162
Normal
0.4
1046
Normal
0.4
482
Normal
0.4
123
Tumor
0.4
723
Tumor
0.4
824
Normal
0.4
1022
Normal
0.4
465
Tumor
0.4
537
Tumor
0.3
466
Normal
0.3
737
Tumor
0.3
222
Normal
0.3
125
Tumor
0.3
477
Tumor
0.3
663
Tumor
0.3
616
Normal
0.3
738
Normal
0.3
137
Tumor
0.3
472
Normal
0.3
483
Tumor
0.3
1026
Normal
0.3
298
Normal
0.3
534
Normal
0.3
1014
Normal
0.3
172
Normal
0.3
648
Normal
0.3
443
Tumor
0.3
1032
Normal
0.3
342
Normal
0.3
958
Normal
0.3
938
Normal
0.3
728
Normal
0.3
518
Normal
0.3
944
Normal
0.3
862
Normal
0.2
314
Normal
0.2
742
Normal
0.2
432
Normal
0.2
1042
Normal
0.2
546
Normal
0.2
412
Normal
0.2
516
Normal
0.2
448
Normal
0.2
1043
Tumor
0.2
364
Normal
0.2
464
Normal
0.2
148
Normal
0.2
414
Normal
0.2
571
Tumor
0.2
146
Normal
0.2
196
Normal
0.2
982
Normal
0.2
922
Normal
0.2
456
Normal
0.2
186
Normal
0.2
416
Normal
0.2
722
Normal
0.2
428
Normal
0.2
462
Normal
0.2
228
Normal
0.2
878
Normal
0.2
618
Normal
0.2
258
Normal
0.2
128
Normal
0.1
356
Normal
0.1
488
Normal
0.1
864
Normal
0.1
785
Tumor
0.1
111
Normal
0.1
452
Normal
0.1
786
Normal
0.1
353
Tumor
0.1
642
Normal
0.1
955
Tumor
0.1
132
Normal
0.1
328
Normal
0.1
376
Normal
0.1
426
Normal
0.1
868
Normal
0.1
956
Normal
0.1
666
Normal
0.1
554
Normal
0.1
924
Normal
0.1
1021
Tumor
0.1
952
Normal
0.1
114
Normal
0.1
874
Normal
0.1
433
Tumor
0.1
278
Normal
0.1
514
Normal
0.1
778
Normal
0.1
481
Tumor
0.1
866
Normal
0.1
358
Normal
0.1
227
Tumor
0.1
375
Tumor
0.1
741
Tumor
0.1
366
Normal
0.0
921
Tumor
0.0
136
Normal
0.0
877
Tumor
0.0
915
Tumor
0.0
664
Normal
0.0
138
Normal
0.0
564
Normal
0.0
362
Normal
0.0
424
Normal
0.0
494
Normal
0.0
914
Normal
0.0
394
Normal
0.0
474
Normal
0.0
232
Normal
0.0
567
Tumor
0.0
527
Tumor
0.0
884
Normal
0.0
526
Normal
0.0
951
Tumor
0.0
517
Tumor
0.0
743
Tumor
0.0
816
Normal
0.0
852
Normal
0.0
142
Normal
0.0
221
Tumor
0.0
628
Normal
0.0
696
Normal
0.0
716
Normal
0.0
286
Normal
0.0
487
Tumor
0.0
925
Tumor
0.0
445
Tumor
0.0
528
Normal
0.0
425
Tumor
0.0
388
Normal
0.0
327
Tumor
0.0
918
Normal
0.0
976
Normal
0.0
1044
Normal
-0.1
422
Normal
-0.1
744
Normal
-0.1
966
Normal
-0.1
978
Normal
-0.1
145
Tumor
-0.1
926
Normal
-0.1
954
Normal
-0.1
1041
Tumor
-0.1
386
Normal
-0.1
455
Tumor
-0.1
968
Normal
-0.1
1016
Normal
-0.1
446
Normal
-0.1
563
Tumor
-0.1
272
Normal
-0.1
354
Normal
-0.1
574
Normal
-0.1
312
Normal
-0.1
214
Normal
-0.1
1028
Normal
-0.1
572
Normal
-0.1
131
Tumor
-0.1
568
Normal
-0.1
777
Tumor
-0.1
126
Normal
-0.1
212
Normal
-0.1
188
Normal
-0.1
965
Tumor
-0.2
297
Tumor
-0.2
686
Normal
-0.2
124
Normal
-0.2
284
Normal
-0.2
421
Tumor
-0.2
262
Normal
-0.2
636
Normal
-0.2
431
Tumor
-0.2
461
Tumor
-0.2
392
Normal
-0.2
1025
Tumor
-0.2
913
Tumor
-0.2
984
Normal
-0.2
344
Normal
-0.2
558
Normal
-0.2
967
Tumor
-0.2
332
Normal
-0.2
468
Normal
-0.2
393
Tumor
-0.3
285
Tumor
-0.3
171
Tumor
-0.3
218
Normal
-0.3
911
Tumor
-0.3
635
Tumor
-0.3
861
Tumor
-0.3
368
Normal
-0.3
662
Normal
-0.3
396
Normal
-0.3
493
Tumor
-0.3
363
Tumor
-0.3
524
Normal
-0.3
268
Normal
-0.3
498
Normal
-0.3
1031
Tumor
-0.3
387
Tumor
-0.3
352
Normal
-0.3
916
Normal
-0.3
641
Tumor
-0.3
755
Tumor
-0.3
231
Tumor
-0.3
447
Tumor
-0.3
478
Normal
-0.3
492
Normal
-0.3
977
Tumor
-0.3
813
Tumor
-0.3
224
Normal
-0.4
873
Tumor
-0.4
341
Tumor
-0.4
883
Tumor
-0.4
713
Tumor
-0.4
415
Tumor
-0.4
434
Normal
-0.4
141
Tumor
-0.4
471
Tumor
-0.4
451
Tumor
-0.4
538
Normal
-0.4
444
Normal
-0.5
427
Tumor
-0.5
331
Tumor
-0.5
697
Tumor
-0.5
112
Tumor
-0.5
185
Tumor
-0.5
187
Tumor
-0.5
161
Tumor
-0.5
463
Tumor
-0.5
671
Tumor
-0.5
721
Tumor
-0.5
983
Tumor
-0.5
672
Normal
-0.5
261
Tumor
-0.6
617
Tumor
-0.6
865
Tumor
-0.6
127
Tumor
-0.6
384
Normal
-0.6
857
Tumor
-0.6
223
Tumor
-0.6
192
Normal
-0.6
536
Normal
-0.6
881
Tumor
-0.6
823
Tumor
-0.6
367
Tumor
-0.6
267
Tumor
-0.7
545
Tumor
-0.7
351
Tumor
-0.7
195
Tumor
-0.7
573
Tumor
-0.7
937
Tumor
-0.7
815
Tumor
-0.7
963
Tumor
-0.7
814
Normal
-0.7
497
Tumor
-0.8
851
Tumor
-0.8
213
Tumor
-0.8
665
Tumor
-0.8
557
Tumor
-0.8
217
Tumor
-0.8
473
Tumor
-0.8
391
Tumor
-0.8
135
Tumor
-0.8
975
Tumor
-0.9
647
Tumor
-0.9
113
Tumor
-0.9
724
Normal
-0.9
395
Tumor
-0.9
311
Tumor
-0.9
817
Tumor
-1.0
191
Tumor
-1.0
1015
Tumor
-1.0
283
Tumor
-1.0
943
Tumor
-1.1
467
Tumor
-1.1
715
Tumor
-1.1
385
Tumor
-1.2
413
Tumor
-1.3
343
Tumor
-1.3
383
Tumor
-1.3
917
Tumor
-1.5
661
Tumor
-1.5
535
Tumor
-1.7
211
Tumor
-1.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
